KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:35 2014 Check: 00 .. Name: ENSTTRP00000012168/1-342 Len: 408 Check: 4442 Weight: 1.00 Name: ENSP00000405032/1-339 Len: 408 Check: 2035 Weight: 1.00 Name: ENSBTAP00000006198/1-380 Len: 408 Check: 4700 Weight: 1.00 Name: bmy_01973T0/1-270 Len: 408 Check: 1124 Weight: 1.00 Name: BACU016983/1-251 Len: 408 Check: 6329 Weight: 1.00 // 1 50 ENSTTRP00000012168/1-342 ---------- ---TANMELP KAFSDLWTCL SAFLNMLSRS LSTASLLSNY ENSP00000405032/1-339 MSDPSQLTQN VCLTQEMELS KAFSGQRTLL SAILSMLSLS FSTTSLLSNY ENSBTAP00000006198/1-380 MSNSSQLIQN VCLTQKMGLP KGFSSQRKRL SAVLNMLSLS LSTASLLSNY bmy_01973T0/1-270 ---------- ------MELP KAISDQWTCL SAFLNMLSLS LSTASLLSNY BACU016983/1-251 ---------- ------MELP KAVSDQWTCL SAFLNMLSLS LSTAPLLSNY 51 100 ENSTTRP00000012168/1-342 WFVGIQKVPK PLCGKGLPAK CFDVPVRLDG SSTNVSSLEV VQYSWETGDD ENSP00000405032/1-339 WFVGTQKVPK PLCEKGLAAK CFDMPVSLDG -DTNTSTQEV VQYNWETGDD ENSBTAP00000006198/1-380 WFVGTQKVPK PLCGKGLPAK CFDVPVPLDG GGTNASSPEV VHYSWETGDD bmy_01973T0/1-270 WFVGIQKVPK PLCGKGLPAK CFDVPVPLDG SSANASSQEV VQYSWETGDD BACU016983/1-251 WSVGIQKVPQ PLCRKGLPAV CVDVPVPLHG SSADASSQEV VQYGWETGDD 101 150 ENSTTRP00000012168/1-342 RSTSHAFGSG MWLSYEEIVQ DP-------- ---------- -------GER ENSP00000405032/1-339 RFSFRSFRSG MWLSCEETVE EP-------- ---------- -------GER ENSBTAP00000006198/1-380 RFTFHAFRSG MWLSCAEIME EP-------- ---------- -------GER bmy_01973T0/1-270 RFTFRAFRSG MWLSCEEIVE DPALLQLQSR KQFRALQASG TAGAKEAGER BACU016983/1-251 RCTFRAFRSG MWLSCEEIVE DP-------- ---------- -------GER 151 200 ENSTTRP00000012168/1-342 CRSFLELTPP TERGEKGLLE SATLQDPCHP SLRFGGKRLM EKAFVPHLPL ENSP00000405032/1-339 CRSFIELTPP AKR------- ---------- ---------- ---------- ENSBTAP00000006198/1-380 CRSFLELTPP TERGEKGLLE FATLQGPRHP TLRFGGKRLM EKASLSHPPL bmy_01973T0/1-270 CRSFLELTPP TERGEKGLLE FATLQGPCHP TLRFGGKRLM EKAFVPHLPL BACU016983/1-251 CRSFLELTPP TERGEKGLLE FATLQGPCHP TLRFGGKRLM EKAFVPQLPL 201 250 ENSTTRP00000012168/1-342 GWGKDPTAIT GSPIRLHRTG THQLPP---- --------PT DGLAIHGAPR ENSP00000405032/1-339 ----EILWLS -LGTQITYIG LQFISFLLLL TDLLLTGNPA CGLKLSAFAA ENSBTAP00000006198/1-380 GLVAKILWLS -LGAQFAYIG LELISFILLL TDLLFTGNPG CSLKLSAFAA bmy_01973T0/1-270 GLGAKILCLS -LGVQFAYIG LELFSFLLVL MDLLFTGNPS CGLKLSTFTA BACU016983/1-251 GLGAKILCLS -LGVQFVYIG LELISFLLLL MDLLFTGNPG CGLKLSTFTA 251 300 ENSTTRP00000012168/1-342 LWPQAEHLHR HLLR-----L VRPSGDGGPY DVVTSLPSNG RLGSRTLEAP ENSP00000405032/1-339 VSSVLSGLLG MVAHMMYSQV FQATVNLGPE DWRPHVWNYG WAFYMAWLSF ENSBTAP00000006198/1-380 ISSVLSGLLG MVGHMMYSQV FQATANLGPE DWRPHAWNYG WAFYTAWVSF bmy_01973T0/1-270 IFSALSGIGR HRNE---ESA LQSGLESIPV NGSL------ ---------- BACU016983/1-251 IFSILSGLLG MVGRVMYAQV FQATANLGPE DWRPHAWNHG WAF------- 301 350 ENSTTRP00000012168/1-342 CLELRPGLLH GLGFLHLLHG VSCHHL---- -----QHNHH LCFLQELACT ENSP00000405032/1-339 TCCMASAVTT FNTYTRMVLE FKCKHSKSFK ENPNCLPHHH QCFPRRLSSA ENSBTAP00000006198/1-380 TCCMASAVTT FNTYTRLVLE FKCRHSKSFR GAPGCQPHHH QCFLQQLACT bmy_01973T0/1-270 ---------- ---------- FSCDKE---- ---------- ---------- BACU016983/1-251 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000012168/1-342 AHK-GPLTSH PQYHHQPVRS VSGGVDFSSE LH-KEFQHGT SWEPQEEVAG ENSP00000405032/1-339 APTVGPLTSY HQYHNQPIHS VSEGVDFYSE LRNKGFQRGA SQELKEAVR- ENSBTAP00000006198/1-380 AHPGGPVTSY PQFHCQPIRS ISEGVDFYSE LHDKELQQGS SQEPETKAAG bmy_01973T0/1-270 ---------- ---------- ---------- ---------- ---------- BACU016983/1-251 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000012168/1-342 SSVEEEQC ENSP00000405032/1-339 SSVEEEQC ENSBTAP00000006198/1-380 SSVEE--C bmy_01973T0/1-270 -------- BACU016983/1-251 --------