KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:28:41 2014 Check: 00 ..
Name: ENSP00000262643/1-410 Len: 443 Check: 8023 Weight: 1.00
Name: BACU000551/1-360 Len: 443 Check: 4168 Weight: 1.00
Name: ENSBTAP00000006215/1-375 Len: 443 Check: 2451 Weight: 1.00
Name: bmy_03034T0/1-441 Len: 443 Check: 6043 Weight: 1.00
Name: ENSTTRP00000007735/1-350 Len: 443 Check: 3701 Weight: 1.00
//
1 50
ENSP00000262643/1-410 ---------- ---------- ---------- -MPRERRERD AKERDTMKED
BACU000551/1-360 ---------- ---------- ---------- -MPREKKERD GKEPGTMKEE
ENSBTAP00000006215/1-375 ---------- ---------- ---------- ---------- ----------
bmy_03034T0/1-441 GPAGPGPLRR PSSPHCRFVP PGLRFDPAPS AMPREKKERD GKEPGTMKEE
ENSTTRP00000007735/1-350 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000262643/1-410 GGAEFSARSR KRKANVTVFL QDPDEEMAKI DRTARDQCGS QPWDNNAVCA
BACU000551/1-360 SGTDVSVRSR KRKANVAV-- -DPDEEVAKI DRTVRSQCGS QPWDSNTVCE
ENSBTAP00000006215/1-375 ---------- --------FL QDPDEEIAKI DRTVRSQCGS QPWDSNRACE
bmy_03034T0/1-441 SGTDVSVRSR KRKANVAVFL QDPDEEVAKI DRTVRSQCGS QPWDSNTVCE
ENSTTRP00000007735/1-350 ---------- ---------- ---------- ---------- -PWDSNTVCE
101 150
ENSP00000262643/1-410 DPCSLIPTPD KEDDDRVYPN STCKPRIIAP --SRGSPLPV LSWANREEVW
BACU000551/1-360 NPCSLIPTPD KEEDELVYPN SAYKPQSCTP --SRASPLPV LNWANREEVW
ENSBTAP00000006215/1-375 NPCSLIPTPD KEEDELLYPH AAYKPQRSTP SSSRASPLPV LNWANREEVW
bmy_03034T0/1-441 NPCSLIPTPD KEEDELVYPN SAYKPQSCTP --SRASPLPV LNWANREEVW
ENSTTRP00000007735/1-350 NPCSLIPTPD KEEDELVYPN SAYKPQSCTP --SRASPLPV LNWANREEVW
151 200
ENSP00000262643/1-410 KIMLNKEKTY LRDQHFLEQH PLLQPKMRAI LLDWLMEVCE VYKLHRETFY
BACU000551/1-360 KIMLNKEKTY LRDKHFMQRH PLLQPKMRAI LLDWLMEVCE VYKLHRETFY
ENSBTAP00000006215/1-375 KIMLNKEKTY LRDKHLMQRH PLLQPKMRAI LLDWLMEVCE VYKLHRETFY
bmy_03034T0/1-441 KIMLNKEKTY SRDKHFMQRH PLLQPKMRAI LLDWLMEVCE VYKLHRETFY
ENSTTRP00000007735/1-350 KIMLNKEKTY LRDKHFMQRH PLLQPKMRAI LLDWLMEVCE VYKLHRETFY
201 250
ENSP00000262643/1-410 LAQDFFDRYM ATQENVVKTL LQLIGISSLF IAAKLEEIYP PKLHQFAYVT
BACU000551/1-360 LAQDFFDRYM ATQQNVVKTL LQLIGISSLF IAAKLEEIYP PKLHQFAYVT
ENSBTAP00000006215/1-375 LAQDFFDRYM ATQQNVVKTL LQLIGISSLF IAAKLEEIYP PKLHQFAYVT
bmy_03034T0/1-441 LAQDFFDRYM ATQQNVVKTL LQLIGISSLF IAAKLEEIYP PKLHQFAYVT
ENSTTRP00000007735/1-350 LAQDFFDRYM ATQQNIVKTL LQLIGISSLF IAAKLEEIYP PKLHQFAYVT
251 300
ENSP00000262643/1-410 DGACSGDEIL TMELMIMKAL KWRLSPLTIV SWLNVYMQVA YLNDLHEVLL
BACU000551/1-360 DGACSGDEIL TMELIIMKAL KWHLSPLTIV SWLNVYMQVA YLNDFYEVLL
ENSBTAP00000006215/1-375 DGACSGDEIL TMELIIMKAL KWHLSPLTIV SWLNVYMQVA YLNDVYEVLL
bmy_03034T0/1-441 DGACSGDEIL TMELIIMKAL KWHLSPLTIV SWLNVYMQVA YLNDFYEVLL
ENSTTRP00000007735/1-350 DGACSGDEIL TMELIIMKAL KWHLSPLTIV SWLNVYMQVA YLNDFYEVLL
301 350
ENSP00000262643/1-410 PQYPQQIFIQ IAELLDLCVL DVDCLEFPYG ILAASALYHF SSSELMQKVS
BACU000551/1-360 PQYPQQIFIQ IAELLDLCVL DVGCLEFSYG VLAASALYHF SSSELMQKVS
ENSBTAP00000006215/1-375 PQYPQQIFIQ IAELLDLCVL DVGCLEFSYG VLAASALYHF SSSELMQKVS
bmy_03034T0/1-441 PQYPQQIFIQ IAELLDLCVL DVGCLEFSYG VLAASALYHF SSSELMQKVS
ENSTTRP00000007735/1-350 PQYPQQIFIQ IAELLDLCVL DVGCLEFSYG VLAASALYHF SSSELMQKVS
351 400
ENSP00000262643/1-410 GYQWCDIENC VKWMVPFAMV IRETGSSKLK HFRGVADEDA HNIQTHRDSL
BACU000551/1-360 DE-------- ---------- ---------- -FLKLPEQPL HSL-SHRLQI
ENSBTAP00000006215/1-375 GYQWCDIEKC VKWMVPFAIV IRETGSSKLK HFRGVPAEDA HNIQTHINSL
bmy_03034T0/1-441 GYQWCDIERC VKWMVPFAMV IRETGSSKLK HFRGVPAEDA HNIQTHINSL
ENSTTRP00000007735/1-350 GYQWCDIEKC VKWMVPFAMV IRETGSSKLK HFRGVPAEDA HNIQTHINSL
401 450
ENSP00000262643/1-410 DLLDKARAKK AMLSEQNRAS PLPSGLLTPP QSGKKQSSGP EMA
BACU000551/1-360 SQKDSSSFNS V--------- --------AK KNGGQQILSL SIM
ENSBTAP00000006215/1-375 DLLDKAQAKK AILSEENRIS PLPTGVLTPP QSSKKQSSGQ GSA
bmy_03034T0/1-441 DLLDKAQVKK AILSEENRIS PLPTGVLTPP QSSKKQSSGQ GTA
ENSTTRP00000007735/1-350 DLLDKAQVKK AILSEENRIS PLPTGVLTPP QSSKKQSSGQ GTA