KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:43 2014 Check: 00 .. Name: ENSTTRP00000005573/1-328 Len: 360 Check: 7981 Weight: 1.00 Name: ENSP00000231228/1-328 Len: 360 Check: 5598 Weight: 1.00 Name: bmy_06458T0/1-293 Len: 360 Check: 4263 Weight: 1.00 Name: ENSBTAP00000006222/1-327 Len: 360 Check: 1567 Weight: 1.00 Name: BACU019076/1-329 Len: 360 Check: 88 Weight: 1.00 // 1 50 ENSTTRP00000005573/1-328 ----MYPQQL VVSWFSL--- --------VL LAPP------ ---------- ENSP00000231228/1-328 ----MCHQQL VISWFSL--- --------VF LASP------ ---------- bmy_06458T0/1-293 KTQDAFQHSC LVTLHPLPKE VDAPSAVGCL LVFPGFAGIS HHGYMGTGEK ENSBTAP00000006222/1-327 ----MHPQQL VVSWFSL--- --------VL LASP------ ---------- BACU019076/1-329 ----MHPQQL VVSWFSL--- --------VL LASP------ ---------- 51 100 ENSTTRP00000005573/1-328 IMAIWELEKN VYVVELDWYP DAPGEMVVLT CDTPEEDGIT WTSDQSDEVL ENSP00000231228/1-328 LVAIWELKKD VYVVELDWYP DAPGEMVVLT CDTPEEDGIT WTLDQSSEVL bmy_06458T0/1-293 CLILQPLCSP VYVVELDWYP DAPGEMVVLT CDTPEEDGIT WTSDQSNEVL ENSBTAP00000006222/1-327 IVAMWELEKN VYVVELDWYP DAPGETVVLT CDTPEEDGIT WTSDQSSEVL BACU019076/1-329 ITAIWELEKN VYVVELDWYP DSPGEMVVLT CDTPEEDGIT WTSDQSNEVL 101 150 ENSTTRP00000005573/1-328 GSGKTLTIQI KEFGDAGQYT CHKGGEVLSH SLLLLHKKED GIWSTDILKD ENSP00000231228/1-328 GSGKTLTIQV KEFGDAGQYT CHKGGEVLSH SLLLLHKKED GIWSTDILKD bmy_06458T0/1-293 GSGKTLTIQV KEFGDAGQYT CHKGGEVLSH SLLLLHKKED GIWSTDILKD ENSBTAP00000006222/1-327 GSGKTLTIQV KEFGDAGQYT CHKGGEALSR SLLLLHKKED GIWSTDILKD BACU019076/1-329 GSGKTLTIQV KEFGDAGQYT CHKGGKVLSH SLLLLHKKED GIWSTDILKD 151 200 ENSTTRP00000005573/1-328 QKEPKNKSFI KCEAKNYSGH FTCWWLTAIS TDLKFSVQSS TGXXXXXXXX ENSP00000231228/1-328 QKEPKNKTFL RCEAKNYSGR FTCWWLTTIS TDLTFSVKSS RGSSDPQGVT bmy_06458T0/1-293 QKEPKNKSFL KCEAKNYSGH FTCWWLTAIS TDLKFSVKSS TGSSDPRGVT ENSBTAP00000006222/1-327 QKEPKAKSFL KCEAKDYSGH FTCWWLTAIS TDLKFSVKSS RGSSDPRGVT BACU019076/1-329 QKEPKNKSFL KCEAKNYSGH FTCWWLTAIS TDLKFSVKSS TGSSEPREVT 201 250 ENSTTRP00000005573/1-328 XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000231228/1-328 CGAATLSAER VRGDNKEY-E YSVECQEDSA CPAAEESLPI EVMVDAVHKL bmy_06458T0/1-293 CGAATLSAER VRVDHREYKK YTVECQEGSA CPAAEESLPI E--------- ENSBTAP00000006222/1-327 CGAALLSAEK VSLEHREYNK YTVECQEGSA CPAAEESLLI EVVVEAVHKL BACU019076/1-329 CGAATLSAER VRVDHREYKK YTVECQEGSA CPAAEESLPI EVVVEAVHKL 251 300 ENSTTRP00000005573/1-328 XXXXXXXXXX XXXXXKPDPP KNLQLKPLKN SQHVEVSWEY PDTWSTPHSY ENSP00000231228/1-328 KYENYTSSFF IRDIIKPDPP KNLQLKPLKN SRQVEVSWEY PDTWSTPHSY bmy_06458T0/1-293 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006222/1-327 KYENYTSSFF IRDIIKPDPP KNLQLRPLKN SRQVEVSWEY PDTWSTPHSY BACU019076/1-329 KYENYTSSFF IRDIIKPDPP KNLQLKPLKN SRHVEVSWEY PDTWSTPHSY 301 350 ENSTTRP00000005573/1-328 FSLTFCVQVQ GKNKRERKDK LFTDKTSAKV TCHKNANIRV QARDRYYSSY ENSP00000231228/1-328 FSLTFCVQVQ GKSKREKKDR VFTDKTSATV ICRKNASISV RAQDRYYSSS bmy_06458T0/1-293 --------VQ GKNKRERKDK LFMDKTSAKV TCHKDANVRV QARDRYYSSS ENSBTAP00000006222/1-327 FSLTFCVQVQ GKNKREKK-- LFMDQTSAKV TCHKDANVRV QARDRYYSSF BACU019076/1-329 FSLTFCVQVQ GKNKRERKDK LFMDKTSAKV TCHKDANVRV QARDRYYSSS 351 400 ENSTTRP00000005573/1-328 WSEWASVSCS ENSP00000231228/1-328 WSEWASVPCS bmy_06458T0/1-293 WSEWASVSCS ENSBTAP00000006222/1-327 WSEWASVSCS BACU019076/1-329 WSEWASVSCS