KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:28:47 2014 Check: 00 .. Name: ENSP00000433277/1-297 Len: 351 Check: 6241 Weight: 1.00 Name: ENSBTAP00000006236/1-303 Len: 351 Check: 974 Weight: 1.00 Name: BACU005417/1-172 Len: 351 Check: 2629 Weight: 1.00 Name: ENSTTRP00000000007/1-289 Len: 351 Check: 6806 Weight: 1.00 Name: bmy_16533T0/1-273 Len: 351 Check: 9286 Weight: 1.00 // 1 50 ENSP00000433277/1-297 MTTPRNSVNG TFPAEPMKGP IAMQSGPKPL FRRMSSLVGP TQSFFMRESK ENSBTAP00000006236/1-303 MTTPRNSMVG AFPAEPLKGP IAMHAAQKVV PRRVPVVVGP TQSFFMREAK BACU005417/1-172 --MNRNETKV LAPS-----P LALDILHSPI Q--------- ---------- ENSTTRP00000000007/1-289 MTTPRNSMSG AFPA----GP IAMQPVQKLI PRRV-SVVGA TQSFFMRESK bmy_16533T0/1-273 MTTPRNSMSG AFPA----GP IAMQPVQKLI PRRVPTVVGA TQSFFMRESK 51 100 ENSP00000433277/1-297 TLG------- ---------- ---------- ------AVQI MNGLFHIALG ENSBTAP00000006236/1-303 ALG------- ---------- ---------- ------AVQI MNGLFHIALG BACU005417/1-172 ---------- ---------- ---------- ------AVQI MNGLFHIALG ENSTTRP00000000007/1-289 ALG------- ---------- ---------- ------AVQV MNGLFHIALG bmy_16533T0/1-273 ALGPHPGQEP RLPASPLLSH LKMTSIHPSV PLFSPQAVQI MNGLFHIALG 101 150 ENSP00000433277/1-297 GLLMIPAGIY APICVTVWYP LWGGIMYIIS GSLLAATEKN SRKCLVKGKM ENSBTAP00000006236/1-303 SLMLIHMDVY MPICVTLWYP LWGGIMFIIS GSLLAAAEKN STQSMLTGRL BACU005417/1-172 GLLLIHAEVY APICVTLWYP LWGGIM---- ---------- ---------- ENSTTRP00000000007/1-289 GLLLLHAEVY APICVTLWYP LWGGIMYIIS GSLLAAAEKN SMKSLVRGRI bmy_16533T0/1-273 GLLLIHAEVY APICVTLWYP LWGGIM---- ---------- -----VRGRI 151 200 ENSP00000433277/1-297 IMNSLSLFAA ISGMILSIMD ILNIKISHFL KMESLNFIRA HTPYINIYNC ENSBTAP00000006236/1-303 IMNSLSLFAA ISGIIFLIMD IFNMTISHFF KMENLNLIKT QVPYININNC BACU005417/1-172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000007/1-289 IMNSLSLFAA ISGIIFLIMD IFNLTISHFF KMESLNLTKA PTPYINIHNC bmy_16533T0/1-273 IMNSLSLFAA ISGIIFLIMD IFNLT----- ---------- ---------- 201 250 ENSP00000433277/1-297 EPANPSEKNS PSTQYCYSIQ SLFLGILSVM LIFAFFQELV IAGIVENEWK ENSBTAP00000006236/1-303 ERANPDENNS QSVEYCARIR FVFLVSMKVM QMPAFLTSTV MCCTVENEWK BACU005417/1-172 ---------- ---------- ----GNFAVM LLFAFLQKLV TAGTVENEWK ENSTTRP00000000007/1-289 EPANPADKNS LAMQYCDSIR F---GIFAVM LLFAFLQKLV TAGTVENEWK bmy_16533T0/1-273 ---------- ---------- ----GIFAVM LLFAFLQKLV TAGTVENEWK 251 300 ENSP00000433277/1-297 RTCSRPKSNI VLLSAEEKKE QTIEIKEEVV GLTETSSQ-- ----PKNEED ENSBTAP00000006236/1-303 KLCSRPKANV VLLSAEEKKE QAIEIKEEVV EQIEVAEQIE ISSLPKNEED BACU005417/1-172 KICSRPKANV VLLSAEEKKE QAIEIKEEVV EQIEISSQ-- ----PKNEED ENSTTRP00000000007/1-289 KICSRPKANV VLLSAEEKKE QAIEIKEEVV EQIEISSQ-- ----PKNEED bmy_16533T0/1-273 KICSRPKANV VLLSAEEKKE QAIEIKEEVV EQIEISSQ-- ----PKNEED 301 350 ENSP00000433277/1-297 IEIIPIQ--E EEEEETETNF PEPPQDQESS PIENDSSP-- ---------- ENSBTAP00000006236/1-303 IEIIPVQ--E EEEEEAEMNF PEPPQDQEDS PIENDSVP-- ---------- BACU005417/1-172 IEIIPVQEEE EEEEETEINF PEPPQDQEAS PIENDSVP-- ---------- ENSTTRP00000000007/1-289 IEIIPVQ--E EEEEETEITF PEPPQDQEAS PLENDSVP-- ---------- bmy_16533T0/1-273 IEIIPVQEEE EEEEETEINF PEPPQDQEAS PIENDSTLTF TASKRLIYPH 351 400 ENSP00000433277/1-297 - ENSBTAP00000006236/1-303 - BACU005417/1-172 - ENSTTRP00000000007/1-289 - bmy_16533T0/1-273 F