KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:28:48 2014 Check: 00 .. Name: ENSBTAP00000006258/1-468 Len: 625 Check: 5943 Weight: 1.00 Name: ENSTTRP00000009001/1-453 Len: 625 Check: 6573 Weight: 1.00 Name: bmy_14553T0/1-451 Len: 625 Check: 5730 Weight: 1.00 Name: BACU018186/1-478 Len: 625 Check: 4164 Weight: 1.00 // 1 50 ENSBTAP00000006258/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009001/1-453 MLRLEPSPGR G----RLLPV LLALLGMTWA EVRPLQLQEK QVPVPGXXXX bmy_14553T0/1-451 MLRLQPSPGL GGHRPGLLPV LLALLGMTWA EVRPLQLQEK QVPVPGALSK BACU018186/1-478 MLRLQPSPGL GGHRPGLLPV LLALLGMTWA EVRPLQLQEK QVPVPGALSK 51 100 ENSBTAP00000006258/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009001/1-453 XXXXXXXXXX XXXXXXXXXX XXXXXXXDWS ESLAQQAQTR AALCGAPAPS bmy_14553T0/1-451 KESFLLLSLH NRLRSRVHPP AANMQRMDWS ESLAQQAQTR AALCGAPAPS BACU018186/1-478 KESFLLLSLH NRLRSRVHPP AANMQRMDWS ESLAQQAQTR AALCGAPDPR 101 150 ENSBTAP00000006258/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009001/1-453 PASVPRATPQ VGWNVQLLPV SSASFIHVVG LWFSEGQQYS QAAAECAPNA bmy_14553T0/1-451 PASVPRATPQ VGWNVQLLPV SSASFTHVVG LWFLEGQQYS QAAAECAANA BACU018186/1-478 PASVPRATPQ VGWNVQLLPV SSVSFTHVVG LWFLEGQQYS QAAAECAPNA 151 200 ENSBTAP00000006258/1-468 ------QLVW ATSSQLGCGR HLCSGAQGEL EAFVCAYSPG GNWEVNGKTI ENSTTRP00000009001/1-453 TCTHY--LVW ATSSQLGCGR HPCSGAQAEM EAFVCAYSPG GNWEVNGKTI bmy_14553T0/1-451 TCAHYTQLVW ATSSQLGCGR HPCPGAQGEM EAFVCAYSPG GNWEVNGKTI BACU018186/1-478 TCAHYTQLVW ATSSQLGCGR HPCPGAQGEM EAFVCAYSPG GNWEVNGKTI 201 250 ENSBTAP00000006258/1-468 VPYKKGAWCS LCTASVSGCF KAWDHAGGLC EVPRNPCRMS CRNHGHLNVS ENSTTRP00000009001/1-453 VPYKKGAWCS LCTASVSGCF KAWDHAGGLC EVPRNPCRMS CRNHGHLNLS bmy_14553T0/1-451 VPYKKGAWCS LCTASVSGCF KAWDHAGGLC EVPRNPCRMS CRNHGHLNLS BACU018186/1-478 VPYKKGAWCS LCTASVSGCF KAWDHAGGLC EVPRNPCRMS CRNHGHLNLS 251 300 ENSBTAP00000006258/1-468 TCHCHCPPGY TGRYCQVRCS VRCVHGRFRE EECSCVCDVG FGGAQCATKV ENSTTRP00000009001/1-453 TCHCHCPPGY TGRYCQVRCS VQCVHGRFRE EECSCVCDVG YGGAQCATKV bmy_14553T0/1-451 TCHCHCPPGY TGRYCQVRCS VQCVHGRFRE EECSCVCDVG YGGAQCATKV BACU018186/1-478 TCHCHCPPGY TGRYCQVRCS VQCVHGRFRE EECSCVCDVG YGGAQCAI-- 301 350 ENSBTAP00000006258/1-468 RFPFHTCDLR IDGDCFTVSS EADTYYGAKM KCQGKGGVLA QIESQKVQDI ENSTTRP00000009001/1-453 HFPFHTCDLR IDGDCFMVSS EADTYYGAKM KCQGKGGVLA QIESQKVQDI bmy_14553T0/1-451 HFPFHTCDLR IDGDCFMVSS EADTYYGAKM KCQGKGGVLA QIESQKVQDI BACU018186/1-478 -FPFHTCDLR IDGDCFMVSS EADTYYGAKM KCQGKGGVLA QIESQKVQDI 351 400 ENSBTAP00000006258/1-468 LAFYLGRLET TNEVTDSDFE TRNFWIGREL TERSRKCGAG SQGWGPTGHR ENSTTRP00000009001/1-453 LAFYLGRLET TNEVTNNDFE TRNFWIG--L TYKTAK---D SFRW------ bmy_14553T0/1-451 LAFYLGRLET TNEVTNNDFE TRNFWIG--L TYKTAK---D SFRW------ BACU018186/1-478 LAFYLGRLET TNEVTNNDFE TRNFWIG--L TYKTAK---D SFRW------ 401 450 ENSBTAP00000006258/1-468 AAGSRQALSP GSGRGPGTLG AGPTLAAVAQ GSP-TRAPRT PSAGPRGSTS ENSTTRP00000009001/1-453 ---------- -------TTG EHQSFTSFAF GQPDNQGPAW LRAARFGNCV bmy_14553T0/1-451 ---------- -------TTG EHQSFTSFAF GQPDNQG--- -----FGNCV BACU018186/1-478 ---------- -------TTG EHQSFTSFAF GQPDNQG--- -----FGNCV 451 500 ENSBTAP00000006258/1-468 PSQASPLGSQ TTRGLATAWS CRRQPPSTGM TSAAKPATAT SASLLESTSP ENSTTRP00000009001/1-453 ELQASA---- -----AFNWN DQR------- ---------- ---------- bmy_14553T0/1-451 ELQASA---- -----AFNWN DQR------- ---------- ---------- BACU018186/1-478 ELQASA---- -----AFNWN DQR------- ---------- ---------- 501 550 ENSBTAP00000006258/1-468 AGTQGTEIQP CPSPARAWTH SPAGLPALPC RTRAWLGLWP TTKEVSDLAG ENSTTRP00000009001/1-453 ---------- CKTRNRYICQ FAQEHISR-- --------WD ---------- bmy_14553T0/1-451 ---------- CKTRNRYICQ FAQEHISR-- --------WD ---------- BACU018186/1-478 ---------- CKTRNRYICQ FGEGLPMAPL -------LWP ---------- 551 600 ENSBTAP00000006258/1-468 CRAGYKRGRQ RLVEEEGSVG APTPGLLLIG KMGLNQALKQ ESGPAGRSAC ENSTTRP00000009001/1-453 ---------- ---------- -PGP------ ---------- ---------- bmy_14553T0/1-451 ---------- ---------- -PGP------ ---------- ---------- BACU018186/1-478 ---------- ---------- -LAPGDIQMN SLECLSTQGH EDILLRASLD 601 650 ENSBTAP00000006258/1-468 SSPPRLDPLG QMEAPPPPTV HPTKD ENSTTRP00000009001/1-453 ---------- ---------- ----- bmy_14553T0/1-451 ---------- ---------- ----- BACU018186/1-478 L--------- ---------- -----