KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:29:01 2014  Check: 00 ..

 Name: BACU003536/1-162          Len:    207  Check:  8324  Weight:  1.00
 Name: ENSP00000325589/1-206     Len:    207  Check:  916  Weight:  1.00
 Name: ENSBTAP00000006279/1-202  Len:    207  Check:  2139  Weight:  1.00
 Name: bmy_07834T0/1-205         Len:    207  Check:  6530  Weight:  1.00
 Name: ENSTTRP00000012574/1-205  Len:    207  Check:  9332  Weight:  1.00

//


                          1                                                   50
BACU003536/1-162          ---------- ---------- -----MASSG SCTRLPQPLA L-------RG 
ENSP00000325589/1-206     MALPCTLGLG MLLALPGALG SGGSAEDSVG SSS-VTVVLL LLLLLLLATG 
ENSBTAP00000006279/1-202  MDLPCALGLW TLLALPGALG SS---SSDSG SSSSVTVVLL LLLLLLLVAG 
bmy_07834T0/1-205         MDLPCVLGLW ALLALPGVLG SGGGAKDSPG SSSSVTVVLL LLLLLLLAAG 
ENSTTRP00000012574/1-205  MDLRCVLGLW TLLALPGALG SGRSAEDSPG SSSSVTVVLL LLLLLLLATG 


                          51                                                 100
BACU003536/1-162          PRPQGRRVER KC------CR KCCS-WGSPR G--WEG--GR WL--RAELGS 
ENSP00000325589/1-206     LALAWRRLSR DSGGYYHPAR LGAALWGRTR RLLWASPPGR WLQARAELGS 
ENSBTAP00000006279/1-202  LALAWRRLSR DSGGYYHPAR LGAALWGRTR RLLWASPPGR WL--RAELGS 
bmy_07834T0/1-205         LALAWCRLSR DSGGYYHPAR LGAALWGRTR RLLWASPPGR WL--RAELGS 
ENSTTRP00000012574/1-205  LALAWCRLSR DSGGYYHPAR LGAALWGRTR RLLWASPPGR WL--RAELGS 


                          101                                                150
BACU003536/1-162          PEEDPERQED EQDAEDDYDL GGGHGEREPQ EGAQRGEEPS QQHAPEPAEE 
ENSP00000325589/1-206     TDNDLERQED EQDTDYDHVA DGGLQADPGE GEQQCGEASS PEQVPVRAEE 
ENSBTAP00000006279/1-202  PDEDPEQQED EQDVEDDYDL LSGQEERRSQ EEERRGEGPS PPQATEPAGA 
bmy_07834T0/1-205         PEEDPERQED EQDAEDDYDL GGGHGEREPQ GGAQRGEGSS PQQAPEPAEE 
ENSTTRP00000012574/1-205  PEEDPERQED ERDVEDDCDL GGGQEERESQ EEGQRGEGPS PQQAPEPAEE 


                          151                                                200
BACU003536/1-162          AYDEDAEGGL GLGSQGPVGS RGSAEALLSD LHAFAGSAAW DDSTRASGGQ 
ENSP00000325589/1-206     ARDSDTEGDL VLGSPGPASA GGSAEALLSD LHAFAGSAAW DDSARAAGGQ 
ENSBTAP00000006279/1-202  VHNDDTEGSL GLSCQGPAGS GGSAEALLSD LHAFAGSAAW DDSSRAASGQ 
bmy_07834T0/1-205         AYDDDAGGGL GLGSQGPVGS RGSAEALLSD LHAFAGSAAW DDSTRAAGGQ 
ENSTTRP00000012574/1-205  AYDDDTEGGL GLGSQGPVGS GGSAEALLSE LHAFAGSAAW DDSTRAAGSR 


                          201                                                250
BACU003536/1-162          GLHVTAL 
ENSP00000325589/1-206     GLHVTAL 
ENSBTAP00000006279/1-202  GLHVTAL 
bmy_07834T0/1-205         GLHVTAL 
ENSTTRP00000012574/1-205  GLHVTAL