KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:03 2014 Check: 00 .. Name: ENSBTAP00000006288/1-943 Len: 975 Check: 5989 Weight: 1.00 Name: ENSP00000356247/1-967 Len: 975 Check: 6792 Weight: 1.00 Name: ENSTTRP00000010654/1-961 Len: 975 Check: 6880 Weight: 1.00 Name: bmy_09435T0/1-778 Len: 975 Check: 3682 Weight: 1.00 Name: BACU009789/1-857 Len: 975 Check: 3107 Weight: 1.00 // 1 50 ENSBTAP00000006288/1-943 MPRAPRLLPL WLCAAALCAP P--AAPPPRP RP-GCPVPCR CREAGILLWV ENSP00000356247/1-967 MPSPPGLRAL WLCAALCASR RAGGAPQPGP GPTACPAPCH CQEDGIMLSA ENSTTRP00000010654/1-961 MPSAPGLRAL WLCAALCASP ---CAPQPGP RP-ACPAPCR CHEDGIMLSA bmy_09435T0/1-778 ------MKSR W--------- ---DTPSWEP -PGFCP---- ---------- BACU009789/1-857 ---------- ---------- ---------- ---------- ------MLSA 51 100 ENSBTAP00000006288/1-943 DCSERGLSTV PAGLDPLTA- -YLDLSMNSL TELWPGVFHH LRFLEELRLS ENSP00000356247/1-967 DCSELGLSAV PGDLDPLTA- -YLDLSMNNL TELQPGLFHH LRFLEELRLS ENSTTRP00000010654/1-961 DCSERGLSAV PGDLDPLTA- -YLDLSMNHL MELRPGLFLN LRFLEELRLS bmy_09435T0/1-778 ---------- PWGLGPACSP EWLSQSPPPR LTLSP----- --FHGSLSKE BACU009789/1-857 DCSERGLSAV PGDLDPLTA- -YLDLSMNNL TELRPGLFLN LRFLEELRLS 101 150 ENSBTAP00000006288/1-943 GNRLAHI-PG QAFSGLSSLK ILMLQNNRLG GIPAEALWEL PGLQSLRLDA ENSP00000356247/1-967 GNHLSHI-PG QAFSGLYSLK ILMLQNNQLG GIPAEALWEL PSLQSLRLDA ENSTTRP00000010654/1-961 GNRLSHI-PG QAFSGLHSLK ILMLQNNLLG GIPAEALWEL QSLQSLRLDA bmy_09435T0/1-778 GKSQADVEPG S--------- ---------- --PAD----- ---------- BACU009789/1-857 GNRLSHI-PG QAFSGLYSLK ILMLQNNLLG GIPAEALWEL RSLQSLRLDA 151 200 ENSBTAP00000006288/1-943 NLISLVPDRS FEGLTSLRHL WLDDNALTEI PVRALSHLRA LQAVTLALNR ENSP00000356247/1-967 NLISLVPERS FEGLSSLRHL WLDDNALTEI PVRALNNLPA LQAMTLALNR ENSTTRP00000010654/1-961 NLISLVPDRS FEGLSSLRHL WLDDNALTEI PVRALGNLRA LQAVTLALNR bmy_09435T0/1-778 ---------- ---------- ---------V PLGPRPSCPA ---------- BACU009789/1-857 NLISLVPDRS FEGLSSLRHL WLDDNALSEI PVRALGNLRA LQAVTLALNR 201 250 ENSBTAP00000006288/1-943 IGRVPDYAFW NLSSLVVLHL HNNRIRHLGA HSFEGLQNLE TLDLNCNQLH ENSP00000356247/1-967 ISHIPDYAFQ NLTSLVVLHL HNNRIQHLGT HSFEGLHNLE TLDLNYNKLQ ENSTTRP00000010654/1-961 IGHIPDYAFR NLSSLVVLHL HNNHIEHLGT HSFEGLHNLE TLDLNYNQLH bmy_09435T0/1-778 VGERP----- ---------- ---------- ---------- --GVPCPRPH BACU009789/1-857 IGHIPDHAFR NLSSLVVLHL HNNHIQHLGT HSFEGLHNLE TLDLNYNQLH 251 300 ENSBTAP00000006288/1-943 EFPVAIQTLG RLQELGFHNN NIRAIPEKAF LGNPLLQTIH FYDNPIQFVG ENSP00000356247/1-967 EFPVAIRTLG RLQELGFHNN NIKAIPEKAF MGNPLLQTIH FYDNPIQFVG ENSTTRP00000010654/1-961 EFPVAIRTLG RLQELGFHNN NIKAIPEKAF LGNPLLQTIH FYDNPIQFVG bmy_09435T0/1-778 ALRILLTPVS SPR--GFHNN NIKAIPEKAF LGNPLLQTIH FYDNPIQFVG BACU009789/1-857 EFPVAIRTLG RLQELGFHNN NIKAIPEKAF LGNPLLQTIH FYDNPIQFVG 301 350 ENSBTAP00000006288/1-943 RSAFQHLPGL HTLS--LNGA TDIQEFP-DL RGTTSLESLT LTRAGLQRLP ENSP00000356247/1-967 RSAFQYLPKL HTLS--LNGA MDIQEFP-DL KGTTSLEILT LTRAGIRLLP ENSTTRP00000010654/1-961 RSAFQYLPRL HTLS--LNGA TDIQGFP-DL KGTTSLEVLT LTRAGLRRLP bmy_09435T0/1-778 RSAFRYLPRL HTLS--LNGA TDIQGFP-DL KGTTSLEILT LTRAGLRRLP BACU009789/1-857 RSAFRYLPRL HTLPEGRRGQ GAGGGRPGSV PAPLRSPRRT LTRAGLRRLP 351 400 ENSBTAP00000006288/1-943 PGMCQQLPRL RVLELSHNLI EGLPSLRGCQ KLEEIGLQHN RIWEVRADTF ENSP00000356247/1-967 SGMCQQLPRL RVLELSHNQI EELPSLHRCQ KLEEIGLQHN RIWEIGADTF ENSTTRP00000010654/1-961 PGMCQQLPGL RVLELSHNQI EGLPSLHGCQ KLEEIGLQHN RIWEIRADTF bmy_09435T0/1-778 PGMCQQLPRL RVL------- ---------- -----GLQHN RIWEIRADTF BACU009789/1-857 PGLCQQLPRL RVLELSHNQI EGLPSLHGCQ KLEEIGLQHN RIWEIRADTF 401 450 ENSBTAP00000006288/1-943 RELTFLRSLD LSWNAIRSIH PEAFSTLRSL VKLDLTGNQL SVLPLAGLGG ENSP00000356247/1-967 SQLSSLQALD LSWNAIRSIH PEAFSTLHSL VKLDLTDNQL TTLPLAGLGG ENSTTRP00000010654/1-961 HQLTSL-ALD LSWNAIRSIH PEAFATLRSL VKLDLTDNQL TTLPLAGLGG bmy_09435T0/1-778 RQLTSLQALD LSWNTIRSIH PEAFATLRSL VKLDLTDNQL TTLPLAGLGG BACU009789/1-857 RQLTSLQALD LSWNAIRSIH PEAFVTLRSL VKLDLTDNQL TTLPLAGLGG 451 500 ENSBTAP00000006288/1-943 LVHLKLRGNR ALSQAFPKDS FPRLSPRTLE VPYAYQCCAY SGCPGFFTAS ENSP00000356247/1-967 LMHLKLKGNL ALSQAFSKDS FPKL--RILE VPYAYQCCPY GMCASFFKAS ENSTTRP00000010654/1-961 LVHLKLKGNW ALSQAFPKDS FPRL--RALE VPYAYQCCSY GVCRGVFKAL bmy_09435T0/1-778 LVHLKLKGNW ALSQAFPKDS FPKL--RTLE VPYAYQCCPY GVCPGFFKAL BACU009789/1-857 LVHLKLKGNW ALSQAFPKDS FPKL------ ------STPS GSAV------ 501 550 ENSBTAP00000006288/1-943 GLRGPQHPPP DAQDPPKRT- --LADRAESR YDLDPEELQL EMEEPRPQPA ENSP00000356247/1-967 GQWEAEDLHL DDEESSKRPL GLLARQAENH YDQDLDELQL EMEDSKPHPS ENSTTRP00000010654/1-961 GRRAPHGPHP DDRDAPKRPL GLPADAAESH YDVDPDELQL EVEDPRPHPT bmy_09435T0/1-778 GRRAPQGPHP DDRDAPKRPL GLLAGPAESR YDVDPDELQL EMEDPRPHPT BACU009789/1-857 --VTVPGPPP -----PSASR SLL------- YDVDPDELQL EMEDPRPHPT 551 600 ENSBTAP00000006288/1-943 VQCSPAPGPF QPCEHLFESW GVRLAVWAVV LLALLCNALV LLSLSVAGPG ENSP00000356247/1-967 VQCSPTPGPF KPCEYLFESW GIRLAVWAIV LLSVLCNGLV LLTVFAGGPV ENSTTRP00000010654/1-961 VQCSPVPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09435T0/1-778 VQCSP----- -PCEHLFESW GVRLAVWAVV LLSVLCNGLV LLSLSAAGPG BACU009789/1-857 VQCSPVPGPF KPCEHLFESW GVRLAVWAVV LLSVLCNGLV LLSLSSAGPG 601 650 ENSBTAP00000006288/1-943 PLPPAKFVVG ALAGANALTG LSCGLLASVD ALTFGQFAEF GARWEAGPGC ENSP00000356247/1-967 PLPPVKFVVG AIAGANTLTG ISCGLLASVD ALTFGQFSEY GARWETGLGC ENSTTRP00000010654/1-961 XXXXXXXXXX XXXXXXXXXX XXXXXLASVD ALTFGRFADY GARWESGPGC bmy_09435T0/1-778 PLPPVKFVVG AIAGANTLTG ISCGLLASVD ALTFGRFAEY GARWESGPGC BACU009789/1-857 PLPPVKFVVG AIAGANTLTG LSCGLLASVD ALTFGQFAEY GARWESGPGC 651 700 ENSBTAP00000006288/1-943 RAAGFLAVLG SEASVLLLSL GAAHCSVAAA CVRAHGKAPA AGSVRAGALG ENSP00000356247/1-967 RATGFLAVLG SEASVLLLTL AAVQCSVSVS CVRAYGKSPS LGSVRAGVLG ENSTTRP00000010654/1-961 RAVGFLAVLG SEASMLLLTL AAVHCSVAVA CVRARGKAPA PGSLHAGALG bmy_09435T0/1-778 RAAGFLAVLG SEASVLLLTL AAVHCSVAVA CVRARGKAPA PGSLRAGALG BACU009789/1-857 RATGFLAVLG SEASVLLLPL AAVHCSVAVA C--------- ---------- 701 750 ENSBTAP00000006288/1-943 CLALAGLLAA LPLASVGEYG ASPLCLPHAP PAGRPAALGF AVALVLLHAA ENSP00000356247/1-967 CLALAGLAAA LPLASVGEYG ASPLCLPYAP PEGQPAALGF TVALVMMNSF ENSTTRP00000010654/1-961 CLALAGLAAA LPLASVGEYG ASPLCLPYAP PDGRPAALGF AAALAML-AS bmy_09435T0/1-778 CLVLAGLAAA LPLASVGEYG ASPLCLPYAP PDSRPAALGF AAALVMLNAI BACU009789/1-857 ---------- --------YG ASPLCLPYAP PDSRPAALGF AAALVMLNAI 751 800 ENSBTAP00000006288/1-943 CLLAAALACI RLSCRLPAAG LEASWDCAAV RHVAWLTFAD GLLYCPVAFL ENSP00000356247/1-967 CFLVVAGAYI KLYCDLPRGD FEAVWDCAMV RHVAWLIFAD GLLYCPVAFL ENSTTRP00000010654/1-961 CFLAVALAYV RLSCELPGAE LEAVWDCAAV CHVARLTFAD GLLYCPVAFL bmy_09435T0/1-778 CFLAVAAAYV RLSCDLPRAE LEAVWDCAAV RHVACLTFAD GLLYCPVAFL BACU009789/1-857 CFLAVAAAYV RLSCDLPRAE LEAVWDCAAV RHVACLTFAD GLLYCPVAFL 801 850 ENSBTAP00000006288/1-943 SLASALGLLP VTPEAVKAVL LLVLPLPACL NPLLYLLFSP HSREDLRRLR ENSP00000356247/1-967 SFASMLGLFP VTPEAVKSVL LVVLPLPACL NPLLYLLFNP HFRDDLRRLR ENSTTRP00000010654/1-961 SLASALGLVP VTPEAVKSVL LLALPLPACL NPLLYLLFSP HFREDLRRLR bmy_09435T0/1-778 SLASALGLFP VTPEAVKSVL LLVLPLPACL NPLLYLLFSP HFREDLRRLR BACU009789/1-857 SLASALGLFP VTPEAVKSVL LLVLPLPACL NPLLYLLFSP HFREDLRRLR 851 900 ENSBTAP00000006288/1-943 PCWG------ ----GPREPS SCDSTQALVA FPDVELTAEA S--------E ENSP00000356247/1-967 PRAGDSGPLA YAAAGELEKS SCDSTQALVA FSDVDLILEA SEAGRPPGLE ENSTTRP00000010654/1-961 PCLGVPGPLA LAAAGQLEPS SCDSTQALVA FSDVELILEA SEAGRPPGLE bmy_09435T0/1-778 PCPGVPGPLA LAAAGQLEPS SCDSTQALVA FSDVELILEA SEAGQPPGLE BACU009789/1-857 PCPGVPGPLA LAAAGQLEPS SCDSTQALVA FSDVELILEA SEAGGPPGLE 901 950 ENSBTAP00000006288/1-943 TQGLPLGALV PRQQPGGLKL EGGHVAEPEG TRFGQQPPSR DGGRAQGTPE ENSP00000356247/1-967 TYGFPSVTLI SCQQPGAPRL EGSHCVEPEG NHFGNPQPSM DGELLLRAEG ENSTTRP00000010654/1-961 TYGFTSVTLA PCQQPGGSRP EGSHFAEPEG TRFGNRPPAV DGGQPRGAEG bmy_09435T0/1-778 TYGFTSVTLA PCQQPGGSRP EGSHFLEPEG TRFGNRPPAV DGGQPRRAEG BACU009789/1-857 TYGFTSVTLA PCQQPGDSRP EGSHFAEPEG TRFGNRPPAV DGGQPRGAEG 951 1000 ENSBTAP00000006288/1-943 ASLAGRGRAG GGGFQSSGLA SGV-- ENSP00000356247/1-967 STPAGGGLSG GGGFQPSGLA FASHV ENSTTRP00000010654/1-961 AVPAGAGRAG AGAFQASGSA SASHL bmy_09435T0/1-778 AVPAGGVQEG AGGFQESGSA SASHL BACU009789/1-857 AVPVGGVRAG GGGFQASGSA SASHL