KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:03 2014 Check: 00 .. Name: ENSP00000374387/1-757 Len: 774 Check: 989 Weight: 1.00 Name: ENSBTAP00000006298/1-763 Len: 774 Check: 3215 Weight: 1.00 Name: bmy_21460T0/1-699 Len: 774 Check: 7 Weight: 1.00 Name: ENSTTRP00000013638/1-740 Len: 774 Check: 5617 Weight: 1.00 // 1 50 ENSP00000374387/1-757 MAEVGRTGIS YPGA-LLPQG FWAAVEVWLE RPQVANKRLC GARLEARWSA ENSBTAP00000006298/1-763 MAEVGRVAVS DPGSRLLPGG FWAAVAVWVE RPQVANKRLC GVRLEARRSV bmy_21460T0/1-699 MAELGRVAVR DPDS-LLPGG FWAAVAVWVE RPQVANKRLC GVRLEARRSV ENSTTRP00000013638/1-740 MAELGRVAVR DPDS-LLPGG FWAAVAVWVE RPQVANKRLC GVRLEARRSA 51 100 ENSP00000374387/1-757 ALPCAEARGP GTSAGSEQKE R--------- -GPGPGQGSP GGGPGPRSLS ENSBTAP00000006298/1-763 SLPQIGHTHP GPSAGPEPER LAEAGGCGPD AGPGPVCRSL DAGPGPGPTA bmy_21460T0/1-699 SLPRAEHAGP LPSSGPEREE QAPA-GCGLK EGPGHGQRFP EGGPGPRPSA ENSTTRP00000013638/1-740 CLPRVEHSGP RPSSGPEPEE R--------- -GPGHGQCFP EGGPGPRPGA 101 150 ENSP00000374387/1-757 GPEQGTACCE LEEAQGQCQQ EEAQREAASV PL----RDSG HPGHAEGREG ENSBTAP00000006298/1-763 SPDQGR---- -QEAQGRRQP EEEPGEAAAA AATQLSGTPG QPGKAAAREG bmy_21460T0/1-699 GPEQGP---- -QESQGRRQQ GEDQREAAKS LL--LSGAPG QPGKAGAGEG ENSTTRP00000013638/1-740 VPEQGP---- -QENQGRRQQ GEDQREAAKA PL--LSGARG QPGKAGAGEG 151 200 ENSP00000374387/1-757 DFPAADLDSL WEDFSQSLAR GNSELLAFLT SSGAGSQPEA QRELDVVLRT ENSBTAP00000006298/1-763 DLPAADLGAL WDVFAQSLAG DNREVLAFLT RSGAESPPEG RRELDLVLRT bmy_21460T0/1-699 DFPASDLDSL WDDFSRSLAS GNREMLAFFT RSWAESQLEA QHELDVILRT ENSTTRP00000013638/1-740 DFPAPDLDSL WDDFSRSLAS GNREMLAFFT RSGAESQLEA QHELDVILRT 201 250 ENSP00000374387/1-757 VIPKTSPHCP LTTPRREIVV QDVLNGTITF LPLEEDDEGN LKVKMSNVYQ ENSBTAP00000006298/1-763 VIPKTNLHCP LRGPRREMVL QDVLSGAVTF LPLEEDDEGN LKVKMSNVYQ bmy_21460T0/1-699 VIPKTNTHCP LSAPRREIVV QDVLNGTVIF LPLEEDNEGN LKVKTSNVYQ ENSTTRP00000013638/1-740 VIPKMNAH-- -LAPKREIVV QDVLNGTVIF LPLEEDSEGN LKVKTSNVYQ 251 300 ENSP00000374387/1-757 IQLSHSKEEW FISVLIFCPE RWHSDGIVYP KPTWLGEELL AKLAKWSVEN ENSBTAP00000006298/1-763 IQLSHSEGEW FISVLIFCPE RWHSDGTVYP KPTWLGEELL ARLARWCVES bmy_21460T0/1-699 IQLSHSKGEW FISVLIFCPE RWHSDGIVYP KPTWLGEELL AKLARWCVES ENSTTRP00000013638/1-740 IQLSQSEGEW FISVLIFCPE RWHSDGIVYP KPTWLGEELL ARLARWCVES 301 350 ENSP00000374387/1-757 KKSDFKSTLS LISIMKYSKA YQELKEKYKE MVKVWPEVTD PEKFVYEDVA ENSBTAP00000006298/1-763 RQSGFKSTLS LISVMKYSAA YQALKEKYKD MVKVWPEVTD PEKFVYEDVA bmy_21460T0/1-699 RQSGFKSTLS LISIMKYSKA YQALKEKYKD MVKVWPEVTD PEKFVYEDVA ENSTTRP00000013638/1-740 RQSGFKSTLS LISIMKYSRV HQALKEKYKD MTKVWPEVTD PEKFVHEDVA 351 400 ENSP00000374387/1-757 IAAYLLILWE EERAERRLTA RQSFVDLGCG NGLLVHILSS EGHPGRGIDV ENSBTAP00000006298/1-763 IAAYLLILWE EERAERGETA RQSFVDLGCG NGLLVHILSS EGHPGRGIDV bmy_21460T0/1-699 LAAYLLILWE EERAERGEPA RQSFVDLGCG NGLLVHILSS EGHPGRGIDV ENSTTRP00000013638/1-740 LAAYLLILWE EERAERGETA RQCFVDLGCG NGLLVHILSR EGXXXXXXXX 401 450 ENSP00000374387/1-757 RRRKIWDMYG PQTQLEEDAI TPNDKTLFPD VDWLIGNHSD ELTPWIPVIA ENSBTAP00000006298/1-763 RRRKIWDMYG PQTRLEESAI TPNDKSLFPD VDWLIGNHSD ELTPWIPVIA bmy_21460T0/1-699 RRRKVWDMYG PETHLEESAI TPNDKTLFPD VDWLIGNHSD ELTPWIPVIA ENSTTRP00000013638/1-740 XXXXXXXXXX XXXXXXESAI TPNDKTLFPD VDWLIGNHSD ELTPWIPVIA 451 500 ENSP00000374387/1-757 ARSSYNCRFF VLPCCFFDFI GRYSRRQSKK TQYREYLDFI KEVGFTCGFH ENSBTAP00000006298/1-763 ARSSYDCRFF VLPCCFFDFI GKFQRTQSSK TQYRGYLDFI TEVGSACGFH bmy_21460T0/1-699 ARSSYNCRFF VVPCCFFDFV GKYQRRQSKK TQYRGYLDFI TE-------- ENSTTRP00000013638/1-740 ARSSYNCRFF VLPCCFFDFV GKYQRRQSKK TQYRGYLDFI TEVGTTCGFH 501 550 ENSP00000374387/1-757 VDEDCLRIPS TKRVCLVGKS RTYPSSREAS VDEKRTQYIK SRRGCPVSPP ENSBTAP00000006298/1-763 VEEDCLRIPS TKRVCLIGKS RTYPPTREAS VDEERTRYIN SRRGCPGSPC bmy_21460T0/1-699 ---------- ---VCLIGKS RTYPPAGEDS VDERRTRYIN SRPGGPVSPP ENSTTRP00000013638/1-740 VEEDCLRIPS TKRVCLIGKS RTYPPAGEDS VDERRTRYIN SR-GGPVSPP 551 600 ENSP00000374387/1-757 GWELSPSPRW VAAGSAGHCD GQQALDARVG CVTRAWAAEH GAGPQAEGPW ENSBTAP00000006298/1-763 SGGPALLPPG AAPSSAPGPK GHGALDARPA HTAEAGAGQQ GARAPAEGLW bmy_21460T0/1-699 GQVPAPPPPG A----ADGPE GRGALDAGAG HTPE------ ---SPAEGLW ENSTTRP00000013638/1-740 GQVPAPRPPG AA-GGADGPR EHGALDAGPG HTWS------ ---PPPEGLW 601 650 ENSP00000374387/1-757 LPGFHPREKA ERVRNCAALP RDFIDQVVLQ VANLLLGGKQ LNTRSSRNGS ENSBTAP00000006298/1-763 MSGFQPREKA ERLRNCAALP REFVDRVVLQ VAHLLLG--- ---RSPAGGS bmy_21460T0/1-699 LSGFHPREKA ERVRNCAALP RDFIDRVVLQ VANLLLGXKQ LNMRSSQSRS ENSTTRP00000013638/1-740 LSGFRPREKA KRVRNCAALP RDFIGRVVLQ VANLLLGRKQ SNVTSFQSRS 651 700 ENSP00000374387/1-757 LKTWNGGESL SLAEVANELD TETLRRLKRE CGGLQTLLRN SHQVFQ--VV ENSBTAP00000006298/1-763 AQAWNRGGSL SLAEVAGELD RETLQRLKRE CGGLQTLLRN SPQVFQAPVV bmy_21460T0/1-699 AKAWNRGGSL SLAEVAGELD RDTLQRLKRE CGGLRTLLRN SPQVFQ---- ENSTTRP00000013638/1-740 ATAWSRGGSL SLAEVAGELD RETLQKLKRE CGGLQTLLRN SSQVFQ--VV 701 750 ENSP00000374387/1-757 NGRVHIRDWR EETLWKTKQP EAKQRLLSEA CKTRLCWFFM HHPDGCALST ENSBTAP00000006298/1-763 HGRVRIRDWR EERPRKKEEP EAKRRPSSDT FKTRICWFFA HHPDGCVLPA bmy_21460T0/1-699 ---------- ---------G EGLGRGSLGS RRLRTGSTFP EAARGC---- ENSTTRP00000013638/1-740 NGRVRIRDWR EERPRKEKEP EAKRRQFSET FKTRICWFFA HHPDGCVLPS 751 800 ENSP00000374387/1-757 DCCPFAHGPA ELRPPRTTPR KKIS ENSBTAP00000006298/1-763 DCCPFAHGPG ELRPAPRTKK KKPA bmy_21460T0/1-699 SRADSTTTPS FLAPRFLMK- ---- ENSTTRP00000013638/1-740 DRCPFAHGPG ELRPATTKKS EQPL