KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:05 2014 Check: 00 .. Name: ENSTTRP00000012156/1-1505 Len: 1662 Check: 6199 Weight: 1.00 Name: ENSP00000404151/1-1554 Len: 1662 Check: 2175 Weight: 1.00 Name: bmy_20787T0/1-1567 Len: 1662 Check: 1475 Weight: 1.00 Name: ENSBTAP00000006305/1-1564 Len: 1662 Check: 8681 Weight: 1.00 // 1 50 ENSTTRP00000012156/1-1505 ---------- ---------- ---------- ---------- ---------- ENSP00000404151/1-1554 MSATSWFLVS SSGARHRLPR ELIFVGREEC ELMLQSRSVD KQHAVINYDQ bmy_20787T0/1-1567 MSVTSWFLVS SCGTRHRLPR ELIFVGRDEC ELVLQSRSVD KQHAVINYDH ENSBTAP00000006305/1-1564 ---------- ---------- ---------- -VSLQSRSVD KQHAVINYDQ 51 100 ENSTTRP00000012156/1-1505 ---------- ---------- VRIPDQKYVT LKLNDVIRFG YDSNMYVLER ENSP00000404151/1-1554 DRDEHWVKDL GSLNGTFVND MRIPDQKYVT LKLNDVIRFG YDSNMYVLER bmy_20787T0/1-1567 DRDEHWVKDL GSLNG----- ---------- ---------- ---------- ENSBTAP00000006305/1-1564 DRDEHWVKDL GSLNGTFVND VRIPDQRYVT LKLNDVIRFG YDTNMYVLER 101 150 ENSTTRP00000012156/1-1505 VQHRVPEEAL RHEKYTSQLQ VSVKSPAPKT GEAVPEQAPY CEAVNPRPER ENSP00000404151/1-1554 VQHRVPEEAL KHEKYTSQLQ VSVKGLAPKR SEALPEHTPY CEASNPRPEK bmy_20787T0/1-1567 ---------- -HEKYTSQLQ VSVTSPAPKR GEAVPEQAPY CEAASPRPER ENSBTAP00000006305/1-1564 VQHRVPEEAL RHEKYTSQLQ VSVKTPAPKR AEAVPEQAPY CEASTPRPER 151 200 ENSTTRP00000012156/1-1505 GDRRPGPEAV AYRTPLYGQP SWWGEDDGSS PPEERRQDEP DTERPKELAQ ENSP00000404151/1-1554 GDRRPGTEAA SYRTPLYGQP SWWGEDDGST LPDAQRQGEP YPERPKGPVQ bmy_20787T0/1-1567 GDRRPGPEAA AYRTPLYGQP SWWGEDDGSS PPEERRQDEP DTERPKELAQ ENSBTAP00000006305/1-1564 GDRRPGPEAA TYRTPLYGQP SWWGEDDGGS LPEDRHQDEP CPERPKDLAQ 201 250 ENSTTRP00000012156/1-1505 RDSDLDG--- -FRAPAEPQG YSFRREPSYF EIPTKEVP-P SRAPEVPAHE ENSP00000404151/1-1554 QDGELHG--- -FRAPAEPQG CSFRREPSYF EIPTKETPQP SQPPEVPAHE bmy_20787T0/1-1567 QDSDLVGTPA AFRAPAELQG YPFRREPSYF EIPTKEAP-P PRAPEVPAHE ENSBTAP00000006305/1-1564 QDGDLTGTPA GFRAPSEPQI YSFRREPSYF EIPTKETP-P PRPPEAPVHE 251 300 ENSTTRP00000012156/1-1505 APTRDAEAGG GGVAPVVQSH ACFTIEFDDC SPGKVKIKDH VTKFSLRQRR ENSP00000404151/1-1554 MPTKDAEAGG GGAAPVVQSH ASFTIEFDDC SPGKMKIKDH ITKFSLRQRR bmy_20787T0/1-1567 APTRDAEAGG GGVAPVVQSH ACFTIEFDDC SPGKVKIKDH VTKFSLRQRR ENSBTAP00000006305/1-1564 APTRDAEPGG GGAGP-VQSH ACFTIEFDDC SPGKLKIKDH VTKF-LRQRR 301 350 ENSTTRP00000012156/1-1505 -PGKEPTAIE -VSAET-VAD WLVQSDPSLL QRAGPXXXXX XXXXXXXXXX ENSP00000404151/1-1554 PPGKEATPGE MVSAETKVAD WLVQNDPSLL HRVGPGDDRH STKSDLPVHT bmy_20787T0/1-1567 PPGKEPTPIE VVSAETKVAD WLVQNDPSLL HRAGPADDRH STKSDLPVHT ENSBTAP00000006305/1-1564 PPGKEATPVE VVSAETKVAD WLVQNDPSLL PRAGPGDDRH STKSDLPVHA 351 400 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 RTLKGHKHED GTQSDSEDPL AKAASAAGVP LEASGEQVRL QRQIKRDPQE bmy_20787T0/1-1567 RTLKGHKHED GTQSDSEDPV AKAAGAAGVP SEAGGEQVRL QRQLKRDPQE ENSBTAP00000006305/1-1564 RTLKGHKHED GTQSDSEDPL AKVAGAPGVP AEASGEQARL QRQIKRDPQE 401 450 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 LLHNQQAFVI EFFDEDTPRK KRSQSFTHSP SGDPKADKRR GPTPADRDRP bmy_20787T0/1-1567 LLHSQQAFVI EFFDEDTPRK KRSQSFTHTP PGDPRPDRRR GPGPADRDRP ENSBTAP00000006305/1-1564 LLHNQQAFVI EFFDEDTPRK KRSQSFTHTP PGDPRLDRRR GPGPADRDRP 451 500 ENSTTRP00000012156/1-1505 XXXXX--XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 SVPAP--VQA GGRSSGPQRA GSLKREKTEE RLGSPSPASR TPARPFGSVG bmy_20787T0/1-1567 AAPAPSSARG AGSSSGPQRA GSLKREKTEE RLGSPSPAAR APARPFGSVG ENSBTAP00000006305/1-1564 AAPAP--ARG TGSSSGPQRA GSLKREKTEE RLGSPSPATR AAARPFGSVG 501 550 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPPLPRG ASPAAPSPPP ENSP00000404151/1-1554 RRSRLAQDFM AQCLRESSPA ARPSPEKVPP VLPAPLTPHG TSPVGPPTPP bmy_20787T0/1-1567 RRSRLAQDFM AQCLRDGSPA ARSGPEKTPP TLPTPPLPRG ASPVAPSPPP ENSBTAP00000006305/1-1564 RRSRLAQDFA AQCLRDSSPA ARPGPEKVPP TLPAPLTPRG ASPAASSPPP 551 600 ENSTTRP00000012156/1-1505 PPPADPQVTK ARKQEEDDSL SDAGTYTIDT EAQDREVEEA RRMIDQVFGV ENSP00000404151/1-1554 PAPTDPQLTK ARKQEEDDSL SDAGTYTIET EAQDTEVEEA RKMIDQVFGV bmy_20787T0/1-1567 PPPADPQVTK ARKQEEDDSL SDAGTYTIET EAQDQEVEEA RKMIDQVFGV ENSBTAP00000006305/1-1564 PPPADPQVTK ARKQEEDDSL SDAGTYTIET DAQDQEVEEA RKMIDQVFGV 601 650 ENSTTRP00000012156/1-1505 RESPELSRAS SAAFRPVIRG DREESGD-GV AQRMALLQEF ASRPVGGIGT ENSP00000404151/1-1554 LESPELSRAS SATFRPVIRG DRDESDDGGV AQRMALLQEF ASRPLG--AA bmy_20787T0/1-1567 RESPELSRAS SATFRPVIRG DRDESGD-GV AQRMALLQEF VSRPVG--GT ENSBTAP00000006305/1-1564 LESPELSRAS SAAFRPVIRG DREELGD-GM AHRMALLQEF ASRPAG--VT 651 700 ENSTTRP00000012156/1-1505 PPVELQXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 PQAEHQGLPV PGSPGGQKWV SRWASLADSY SDPGLTEDGL GRRGGEPEGS bmy_20787T0/1-1567 PQVELQGLPV PGSPGGQKWV SRWASLADSY SDPGLSDDGP GRRARELEGA ENSBTAP00000006305/1-1564 PQVELQGLPV PGSPGGQKWV SRWASLADSY SDPGLSEDGP GHRAAELEGI 701 750 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 LPVRMRRRLP QLPSERADSP AGPESSRRSG PGPPELDSEQ PSRLFGQEEL bmy_20787T0/1-1567 LPVRQRRLLP QLPSDRADSP AGPEATRRSG PGPPELGGEQ AGLLLGQEDL ENSBTAP00000006305/1-1564 PPMRPRRLLP QLPSDRADSP AGPEVARRSG PGPPEVGSEQ AGLLLGQEDL 751 800 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGS PQEGPAWTRG RRSPRAPGEP ENSP00000404151/1-1554 DPDSLSDASG SDGGRGPEPG VEPQDSRRRS PQEGPTWSRG RRSPRAPGEP bmy_20787T0/1-1567 EPDSLSDASG SDGGRGPEPG GGLQEERRGS PQEGLAWTRG RRSPRAPGEP ENSBTAP00000006305/1-1564 EPDSLSDASG SDGGPGPEPG GGPQE----- --EGPAWTRG RRSPRGPGEP 801 850 ENSTTRP00000012156/1-1505 APTSFFAGDQ NGEVAFPRKA TVAPGQVEGP GRAAQPSP-- -----PTRDS ENSP00000404151/1-1554 TPASFFIGDQ NGDAVLSRKP LAAPGDGEGL GQTAQPSP-- -----PARDG bmy_20787T0/1-1567 APTSFFVGDQ NGEAVFPRKA TVAPGQVEGP GRAAQRSP-- -----LTRDS ENSBTAP00000006305/1-1564 APTSFFISDP SADAALPRKA PVAPGQVEGP GRAQPSAPAP APAPAPAHDS 851 900 ENSTTRP00000012156/1-1505 VYVSTSGRMV IQLRT-GQPP EPEGPAP--- ----AFVRQE SFTKEPASGP ENSP00000404151/1-1554 VYVSANGRMV IQLRP-GRSP EPDGPAP--- ----AFLRQE SFTKEPASGP bmy_20787T0/1-1567 VYVSTSGRMV IQLRT-GRSP EPEGPAPAAP KEAPAFVRQE SFTKEPASGP ENSBTAP00000006305/1-1564 KYVSTSGRMV IQLQTTGKPP ELEGPAPAPT KEALAFVRQE SFTKEPASGP 901 950 ENSTTRP00000012156/1-1505 AAPGQLPHIS THPLLQDLAA ARASRMDLHP QDTHLILKET ETALAALEAR ENSP00000404151/1-1554 PAPGKPPHIS SHPLLQDLAA TRAARMDFHS QDTHLILKET ETALAALEAR bmy_20787T0/1-1567 AAPGQLPYIS SHPLLQDLAA ARASRMDLCT QDTHLILKET ETALAALEAR ENSBTAP00000006305/1-1564 AVPGQLPQIP SHPLLQDLAT TRAARMDLHS QDTHLILKET ETALAALEAR 951 1000 ENSTTRP00000012156/1-1505 LLSKSVEEPE GELGGAPGPP EDSLSGDSDV DTASTVSLLS GKNGPSP--- ENSP00000404151/1-1554 LLSNSV-DAE CEGGSTPRPP EDALSGDSDV DTASTVSLRS GKSGPSPTTP bmy_20787T0/1-1567 LLSKSVEEPE GELGGAPGPP EDSLSGDSDV DTASTVSLLS GKNGSSP--- ENSBTAP00000006305/1-1564 LLSKSFEEPE GGVGSAPGPP EDSLSGDSDV DTASTVSLLS GKNGPSPTGS 1001 1050 ENSTTRP00000012156/1-1505 QPSGLQKEKP PSPPAAQDVG GVGLSSARER LSEKQRRPPG PADAGRGEPA ENSP00000404151/1-1554 QPLRAQKEMS PSPPAAQDPG GTALVSAREQ SSERQHHPLG PTDMGRGEPV bmy_20787T0/1-1567 QPTGLQKEKL PSPPAAQDLG GVGLSSARER LSEKQRRPLG PADGGRGEPA ENSBTAP00000006305/1-1564 QPSGLQREKP PSPPAAQDLG GVSLSSARER LSEKQRRPLG PVDTGHGEPA 1051 1100 ENSTTRP00000012156/1-1505 RRLAARRGHG PQGSLDWPDE ERGSSLAHLP GVDTVTSDHE TSGAVGAGRR ENSP00000404151/1-1554 RRSAIRRGHR PRGSLDWPSE ERGPVLAHLP SSDVMASNHE TPEATGAGRL bmy_20787T0/1-1567 RRLATRRGHG PRGSLDWPDE ERGSSLAHLP GVDTVTSDHE TSGAMGAGRR ENSBTAP00000006305/1-1564 RRLAARRGHG PRGSPDWPAE DRDSSLAHPP SADTVTSDHE TPGATGAARP 1101 1150 ENSTTRP00000012156/1-1505 GPRRKPTAP- PPSPADGEEQ SRGSAGLHKV QQALICSNSL SCPRTPRASR ENSP00000404151/1-1554 GSRRKPAAP- PPSPAAREEQ SRSSASSQKG PQALTRSNSL STPRPTRASR bmy_20787T0/1-1567 GPRRKPTAP- PPSPAAREEQ SRGSAGAQKV QQALTRSNSL STPRPTRASR ENSBTAP00000006305/1-1564 GTRRKPMAPP PPTTAAREEQ GRGSAGVQKS QQALTRSNSL STPRATRASR 1151 1200 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 LRRARLGDAS DTEAADGERG SLGNPEPVGR PAAEQAKKLS RLDILAMPRK bmy_20787T0/1-1567 LRRARLGDAS DTEAADGERG PAANPEPAGQ PAAEQAKKLS RLDILAMPRK ENSBTAP00000006305/1-1564 LRRARLGDAS DTEAADGERG PPANQEPAGR PAAEQAKKLS RLDILAMPRK 1201 1250 ENSTTRP00000012156/1-1505 XXXXXXXXXX XXXXXXXXXX XXXXXXXYCA GRKP-AVAEA RATARKAANA ENSP00000404151/1-1554 RAGSFTGTSD PEAAPARTSF SGRSVELCCA SRKP-TMAEA RAVSRKAANT bmy_20787T0/1-1567 RAGSFTGRSD SEAAPTRAGF SGRSVELYCA GRKP-AMAEA RATARKATNT ENSBTAP00000006305/1-1564 RAGSFTGPSD SEAAPTRAGF SGRSVELYCP GRKPTTMAEA RPTARKATNA 1251 1300 ENSTTRP00000012156/1-1505 TTP--PRQPF SRARPGSARY SSPNVRRRQQ GSDCTSTSEE EYGSHHGSPK ENSP00000404151/1-1554 ATTTGPRQPF SRARSGSARY TS-------- ---------- ---------- bmy_20787T0/1-1567 TAA--PRQPF SRARPGSARY SSPNVRRRQQ GSDCTSTSEE EYGSHHSSPK ENSBTAP00000006305/1-1564 AAV--PRQPF SRARPGSARY SSPNTRRRQQ GSDCTSTSEE EYGSHHGSPK 1301 1350 ENSTTRP00000012156/1-1505 HARPHASAAT QTPRAGGSGR ARPRAPGLRD TDDEEEEPDP YGFIVQTAEI ENSP00000404151/1-1554 --------TT QTPRAGSSSR ARSRAPGPRD TDDDEEEPDP YGFIVQTAEI bmy_20787T0/1-1567 HARPHASTAT QTPRAGSSGR ARPRAPGLRD TDDEEEEPDP YGFIVQTAEI ENSBTAP00000006305/1-1564 HTRSHASTAT QTPRAGGSGR ARPRAPGLRD TDDEGEEPDP YGFIVQTAEI 1351 1400 ENSTTRP00000012156/1-1505 AEIAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404151/1-1554 AEIARLSQTL VKDVAILAQE IHDVAGDGDT LGSSEPAHSA SLSNMPSTPA bmy_20787T0/1-1567 AEIARAGR-- ---------- ---------- PGTPSGQAAS ALSTAWRAPR ENSBTAP00000006305/1-1564 AEIARLSQTL VKDVATLARE IHDVAGDGDS PGSPGPARSP SLNNVPSTPA 1401 1450 ENSTTRP00000012156/1-1505 XXXXXXX--- -XLVQRIPEA SLNFQKVPPS TPRSQDLDQN MNDRCEDPLA ENSP00000404151/1-1554 STISARE--- -ELVQRIPEA SLNFQKVPPG SLNSRDFDQN MNDSCEDALA bmy_20787T0/1-1567 PTGHAPAPPP LQLVQRIPEA SLSFRKVPPG SLRSQDLDQN MNDRCEDPLA ENSBTAP00000006305/1-1564 STISARE--- -ELVQRIPEA SLNFQKVPPG SLGPRDLDQN MNDRCEDALA 1451 1500 ENSTTRP00000012156/1-1505 GKTRPRNREE ---------- ---------- ---------- --------VI ENSP00000404151/1-1554 NKTRPRNREE ---------- ---------- ---------- --------VI bmy_20787T0/1-1567 GKMRPRNHEE AGAPPLGERA PGSGPRQGVE GTGLPGASRR RADARSSQVI ENSBTAP00000006305/1-1564 NKTRPRNREE ---------- ---------- ---------- --------VI 1501 1550 ENSTTRP00000012156/1-1505 FDNLMLNPVS QLSQAIRENT EHLAEKMKIL FQNTGRAWED LEARINAENE ENSP00000404151/1-1554 FDNLMLNPVS QLSQAIRENT EHLAEKMKIL FQNTGRAWED LEARINAENE bmy_20787T0/1-1567 FDNLMLNPVS QLSQAIRENT EHLAEKMKIL FQNTGRAWED LEARINAENE ENSBTAP00000006305/1-1564 FDNLMLNPVS QLSQAIRENT EHLAEKMKIL FQNSGRAWED LEARINAENE 1551 1600 ENSTTRP00000012156/1-1505 VPILKTSNKE ITSILKELRR VQKQLEVINA IVDPSGNLDL LTGNRGSAGS ENSP00000404151/1-1554 VPILKTSNKE ISSILKELRR VQKQLEVINA IVDPSGSLDL LTGNRSLASS bmy_20787T0/1-1567 VPILKTSNKE ISSILKELRR VQKQLEVINA IVDPSGNLDL LTGNRGSAGS ENSBTAP00000006305/1-1564 VPILKTSNKE ISSILKELRR VQKQLEVINA IVDPSGNLDL LTGNRGPVGS 1601 1650 ENSTTRP00000012156/1-1505 AQ--LGRGRP ASQSPSSPPS ------ALLA RSFPQRANCG TPGLPD---- ENSP00000404151/1-1554 AQPGLGKGRV AAQSPPSPAS AEALLPALPL RNFPQRASCG PPSLPD---- bmy_20787T0/1-1567 AQ--LGRGRP ASQSPSSPTS ------ALPA RSFPQRANCG TPALPDPSFL ENSBTAP00000006305/1-1564 AQ--VGRARP AAPGLCSPSS ------ALPP RSFPQRTSCG TPGLPDPPLR 1651 1700 ENSTTRP00000012156/1-1505 PSFLPDTEQF LI ENSP00000404151/1-1554 PTFLPDAERF LI bmy_20787T0/1-1567 PSFLPDTERF LI ENSBTAP00000006305/1-1564 PDFLPDAERF LI