KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:07 2014 Check: 00 .. Name: ENSTTRP00000005686/1-972 Len: 996 Check: 7510 Weight: 1.00 Name: BACU019096/1-969 Len: 996 Check: 1495 Weight: 1.00 Name: bmy_20673T0/1-902 Len: 996 Check: 2051 Weight: 1.00 Name: ENSP00000074304/1-977 Len: 996 Check: 4350 Weight: 1.00 Name: ENSBTAP00000006322/1-939 Len: 996 Check: 2918 Weight: 1.00 // 1 50 ENSTTRP00000005686/1-972 MTAREHSPRH GTRARAMQRA STVDVAADML GLSLAGSIQD PDEPILEFSL BACU019096/1-969 MTAREHSPRH GTRARAMQRA STIDVAADML GLSLAGSIQD PDEPILEFSL bmy_20673T0/1-902 ---------- ---------- ---------- ---------- -------NSV ENSP00000074304/1-977 MTAREHSPRH GARARAMQRA STIDVAADML GLSLAGNIQD PDEPILEFSL ENSBTAP00000006322/1-939 MTAREHSPRH GARARAMQRA STIDVAGDML GLSLAGNVQD PDEPILEFSL 51 100 ENSTTRP00000005686/1-972 ACSELHTPSL DRKPNSFVAV SVTTPPQAFW TKHAQTEIIE GTNDPIFLSS BACU019096/1-969 ACSELHTPSL DRKPNSFVAV SVTTPPQAFW TKHAQTEIIE GTNDPIFLSS bmy_20673T0/1-902 ACSELHTPSL DRKPNSFVAV SVTTPPQAFW TKHAQTEIIE GTNDPIFLSS ENSP00000074304/1-977 ACSELHTPSL DRKPNSFVAV SVTTPPQAFW TKHAQTEIIE GTNNPIFLSS ENSBTAP00000006322/1-939 ACSELHTPSL DRKPNSFVAV SVTTPPQAFW TKHAQTEIIE GTNDPIFLSS 101 150 ENSTTRP00000005686/1-972 IAFFQDSLIN QMTQIKLSVY DVKDRSQGTM YLLGSGTFVV KDLLQDRRHR BACU019096/1-969 IAFFQDSLIN QMTQIKLSVY DVKDRSQGTM YLLGSGTFVV KDLLQDRHHR bmy_20673T0/1-902 IAFFQDSLIN QMTQIKLSVY DVKDRSQGTM YLLGSGTFVV KDLLQDRHHR ENSP00000074304/1-977 IAFFQDSLIN QMTQVKLSVY DVKDRSQGTM YLLGSGTFIV KDLLQDRHHR ENSBTAP00000006322/1-939 IAFFQDSLIN QMTQIKLSVY DVKDRSQGTM YLLGSGTFVV KDLLQDRHHR 151 200 ENSTTRP00000005686/1-972 LYLTLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019096/1-969 LYLTLRLVFN FVPLQGSGIM RSRDRWGKAL LPVLREHHVP RGQ-SLGGDL bmy_20673T0/1-902 LYLTLRSAES DRVGNITVMG WQMEEKSDQR PPVTRSLDTV NGRMVLPVDE ENSP00000074304/1-977 LHLTLRSAES DRVGNITVIG WQMEEKSDQR PPVTRSVDTV NGRMVLPVDE ENSBTAP00000006322/1-939 LYLTLRSAES DRVGNITVMG WQMEEKSDQR PPVTRSLDTV NGRMVLPVDE 201 250 ENSTTRP00000005686/1-972 XXXXXXXXXX XXXXX--XXX XXXXXVFGGA VCRMYRFPTT EGNHLRILEQ BACU019096/1-969 VVIEEREEKP VRGPLTEWKC AVFIGMFGGA ICRMYRFPTT EGNHLRVLEQ bmy_20673T0/1-902 SLTEALGIRS KYASL--RKD TLLKSVFGGA ICRMYRFPTT EGNHLRILEQ ENSP00000074304/1-977 SLTEALGIRS KYASL--RKD TLLKSVFGGA ICRMYRFPTT DGNHLRILEQ ENSBTAP00000006322/1-939 SLTEALGIRS KYASL--RKD TLLKSVFGGA ICRMYRFPTT EGNHLRILEQ 251 300 ENSTTRP00000005686/1-972 MAESVLSLHV PRQFVKLLLE EDAARVCELE ELGELSPCWE SLRRQIVTQY BACU019096/1-969 MAESVLSLHV PRQFVKLLLE EDAARVCELE ELGELSPCWE SLRRQIVTQY bmy_20673T0/1-902 MAESVLSLHV PRQFVKLLLE EDAARVCELE ELGELSPCWE SLRRQIVTQY ENSP00000074304/1-977 MAESVLSLHV PRQFVKLLLE EDAARVCELE ELGELSPCWE SLRRQIVTQY ENSBTAP00000006322/1-939 MAESVLSLHV PRQFVKLLLE EDAARVCELE ELGELSPCWE SLRRQIATQY 301 350 ENSTTRP00000005686/1-972 QTIILTYQEN LTDLHQYKGP SFKASSLKAD KKLEFVPTNL HIQRMRVQDD BACU019096/1-969 QTIILTYQEN LTDLHQYKGP SFKASSLKAD KKLEFVPTNL HIQRMRVQDD bmy_20673T0/1-902 QTIILTYQEN LTDLHQYKGP SFKASSLKAD KKLEFVPTNL HIQRMRVQDD ENSP00000074304/1-977 QTIILTYQEN LTDLHQYRGP SFKASSLKAD KKLEFVPTNL HIQRMRVQDD ENSBTAP00000006322/1-939 QTIILTYQEN LTDLHQYKGP SFKASSLKAD KKLEFVPTNL HIQRMRVQDD 351 400 ENSTTRP00000005686/1-972 GGSDQNYDIV TIGAPAAHCQ GFKSGGLRKK LHKFEETKKQ -QNGSGTSSS BACU019096/1-969 GGSDQNYDIV TIGAPAAHCQ GFKSGGLRKK LHKFEETKKH ------TSSS bmy_20673T0/1-902 GGSDQNYDIV TIGAPAAHCQ GFKSGGLRKK LHKFEETKKH ------TSSS ENSP00000074304/1-977 GGSDQNYDIV TIGAPAAHCQ GFKSGGLRKK LHKFEETKKH -FEECCTSSG ENSBTAP00000006322/1-939 GGADQNYDIV TIGAPAAHCQ GFKSGGLRKK LHKFEETKKH SFEECCTSSS 401 450 ENSTTRP00000005686/1-972 CQSIIYIPQD IVRAKEIIAQ INTLKTQVSY YAERLSRAAK DRSATGLERT BACU019096/1-969 CQSIIYIPQD IVRAKEIIAQ INTLKTQVSY YAERLSRAAK DRSATGLERT bmy_20673T0/1-902 CQSIIYIPQD IVRAKEIIAQ INTLKTQVSY YAERLSRAAK DRSATGLERT ENSP00000074304/1-977 CQSIIYIPQD VVRAKEIIAQ INTLKTQVSY YAERLSRAAK DRSATGLERT ENSBTAP00000006322/1-939 CQSIIYIPQD IIRAKEIIAQ INTLKTQVSY YAERLSRAAK DRSATGLERT 451 500 ENSTTRP00000005686/1-972 LAILADKTRQ LVTVCDCKLL ATSIHGLNAA RPDYIASKAS PTSTEEEQVM BACU019096/1-969 LAILADKTRQ LVTVCDCKLL ATSIHGLKAA RPDYIASKAS PTSTEEEQVM bmy_20673T0/1-902 LAILADKTRQ LVTVCDCKLL ATSIHGLKAA RPDYIASKAS PTSTEEEQVM ENSP00000074304/1-977 LAILADKTRQ LVTVCDCKLL ANSIHGLNAA RPDYIASKAS PTSTEEEQVM ENSBTAP00000006322/1-939 LAILADKTRQ LVTVCDCKLL ATSIHGLNAA RPDYIASKAS PTSTEEEQVM 501 550 ENSTTRP00000005686/1-972 LRNDQDTLMA RWSGRNSRSS LQVDWHEEEW EKVWLNVDKS LECIIQRADK BACU019096/1-969 LRNDQDTLTA RWSGRNSRSS LQVDWHEEEW EKVWLNVDKS LECIIQRADK bmy_20673T0/1-902 LRNDQDTLTA RWSGRNSRSS LQVDWHEEEW EKVWLNVDKS LECIIQRADK ENSP00000074304/1-977 LRNDQDTLMA RWTGRNSRSS LQVDWHEEEW EKVWLNVDKS LECIIQRVDK ENSBTAP00000006322/1-939 LRNDQDTLMA RWSGRNSRSS LQVDWHEEEW EKVWLNVDKS LECIIQRVDK 551 600 ENSTTRP00000005686/1-972 LLQRERLQAE GCDHSLPGTG SCAGRKGNRG SQAYWIRPED PLCDGPPSP- BACU019096/1-969 LLQRERLRGE GCDHGLPGAG SCAGRKGNRG SQAYWIRLED PLCDTPPSP- bmy_20673T0/1-902 LLQRERLRGE GCDHGLPGAG SCAGRK---- ---------- ---------- ENSP00000074304/1-977 LLQKERLHGE GCEDVFPCAG SCTSKKGNPD SHAYWIRPED PFCDVPSSPC ENSBTAP00000006322/1-939 LLQRERLQGE GCEDGLLGAG SGSSRK---- ---------- ---------- 601 650 ENSTTRP00000005686/1-972 ---RPPAACR PHPTTHCSPP PEESSPGEWS EALYPLLTTL TDCVAMMSDK BACU019096/1-969 ---RPPAACR PHPTTHGSPP PEESSPGEWS EALYPLLTTL TDCVAMMSDK bmy_20673T0/1-902 ---------- -----DGSPP PEESSPGEWS EALYPLLTTL TDCVAMMSDK ENSP00000074304/1-977 PSTMPSTACH PHLTTHCSPP PEESSPGEWS EALYPLLTTL TDCVAMMSDK ENSBTAP00000006322/1-939 ---------- -----DCSPP PEESSPGEWS EALYPLLTTL TDCVAMMSDK 651 700 ENSTTRP00000005686/1-972 AKKAMVFLLM QDSAPTIATF LSLQYRRDVV FCQTLTALIC GFVIKLRNCL BACU019096/1-969 AKKAMVFLLM QDSAPTIATF LGLQYRRDVV FCQTLTALIC GFIIKLRNCL bmy_20673T0/1-902 AKKAMVFLLM QDSAPTIATF LGLQYRRDVV FCQTLTALIC GFIIKLRNCL ENSP00000074304/1-977 AKKAMVFLLM QDSAPTIATY LSLQYRRDVV FCQTLTALIC GFIIKLRNCL ENSBTAP00000006322/1-939 AKKAMVFLLM QDSAPTIASF LSLQYRRDVV FCQTLTALIC GFIIKLRNCL 701 750 ENSTTRP00000005686/1-972 HDDGFLRQLY TIGLLAQFES LLSTYGEELA MLEDMSLGIM DLRNVTFKVT BACU019096/1-969 HDDGFLRQLY TIGLLAQFES LLSTYGEELA MLEDMSLGIM DLRNVTFKVT bmy_20673T0/1-902 HDDGFLRQLY TIGLLAQFES LLSTYGEELA MLEDMSLGIM DLRNVTFKVT ENSP00000074304/1-977 HDDGFLRQLY TIGLLAQFES LLSTYGEELA MLEDMSLGIM DLRNVTFKVT ENSBTAP00000006322/1-939 HDDGFLRQLY TIGLLAQFES LLSTYGEELA MLEDMSLGIM DLRNVTFKVT 751 800 ENSTTRP00000005686/1-972 QATSNASTDM LPVITGNRDG FNVRIPLPGP LFDVLPREIQ SGMLLRVQPV BACU019096/1-969 QATSNASTDM LPVITGNRDG FNVRIPLPGP LFDALPREIQ SGMLLRVQPV bmy_20673T0/1-902 QATSNVSTDM LPVITGNRDG FNVRIPLPGP LFDALPREIQ SGMLLRVQPV ENSP00000074304/1-977 QATSSASADM LPVITGNRDG FNVRVPLPGP LFDALPREIQ SGMLLRVQPV ENSBTAP00000006322/1-939 QATSNASTDM LPVITGNRDG FNVRIPLPGP LFDALPREIQ SGMLLRVQPV 801 850 ENSTTRP00000005686/1-972 LFNVGINEQQ TLAERFGDTS LQEVINVESL VRLNSYFEQF KE-LPEDCLP BACU019096/1-969 LFNVGINEQQ TLAERFGDTS LQEVINVESL VRLNSYFEQF KEVLPEDCLP bmy_20673T0/1-902 LFNVGINEQQ TLAERFGDTS LQEVINVESL VRLNSYFEQF KEVLPEDCLP ENSP00000074304/1-977 LFNVGINEQQ TLAERFGDTS LQEVINVESL VRLNSYFEQF KEVLPEDCLP ENSBTAP00000006322/1-939 LFNVGINEQQ TLAERFGDTS LQEVINVESL VRLNSYFEQF KEVLPEDCLP 851 900 ENSTTRP00000005686/1-972 RSRSQTCLPE LLRFLGQNVH ARKNKNVDIL WQAAEVCRRL NGVRFTSCKS BACU019096/1-969 RSRSQTCLPE LLRFLGQNVH ARKNKNVDIL WQAAEICRRL NGVRFTSCKS bmy_20673T0/1-902 RSRSQTCLPE LLRFLGQNVH ARKNKNVDIL WQAAEICRRL NGVRFTSCKS ENSP00000074304/1-977 RSRSQTCLPE LLRFLGQNVH ARKNKNVDIL WQAAEICRRL NGVRFTSCKS ENSBTAP00000006322/1-939 RSRSQTCLPE LLRFLGQNVH ARKNKNVDIL WQAAEVCRRL NGVRFTSCKS 901 950 ENSTTRP00000005686/1-972 AKDRTAMSVT LEQCLILQHE HGMAPQVFTQ ALECMRSEGC RRENTMKNVG BACU019096/1-969 AKDRTAMSVT LEQCLILQHE HGMAPQVFTQ ALECTRSEGC RRENTMKNVG bmy_20673T0/1-902 AKDRTAMSVT LEQCLILQHE HGMAPQVFTQ ALECMRSIGT REVVTQKNLS ENSP00000074304/1-977 AKDRTAMSVT LEQCLILQHE HGMAPQVFTQ ALECMRSEGC RRENTMKNVG ENSBTAP00000006322/1-939 AKDRTAMSVT LEQCLILQHE HGMAPQVFTQ ALECMRSEGC RRENTMKNVG 951 1000 ENSTTRP00000005686/1-972 S----RKYAF NSLQLKAFPK HYRPPE---- -------GTY GKVET- BACU019096/1-969 S----RKYAF NSLQLKAFPK HYRPPE---- -------GTY GKVET- bmy_20673T0/1-902 GLVPIRDLRL DPSLLCSIPL LALSPNLLIA WLFLSIAYLV AKLRCK ENSP00000074304/1-977 S----RKYAF NSLQLKAFPK HYRPPE---- -------GTY GKVET- ENSBTAP00000006322/1-939 S----RKYAF NSLQLKAFPK HYRPPE---- -------GTY GKVET-