KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:08 2014 Check: 00 .. Name: bmy_07792T0/1-277 Len: 333 Check: 9751 Weight: 1.00 Name: ENSTTRP00000013665/1-297 Len: 333 Check: 714 Weight: 1.00 Name: BACU020207/1-293 Len: 333 Check: 6346 Weight: 1.00 Name: ENSP00000366098/1-293 Len: 333 Check: 6447 Weight: 1.00 Name: ENSBTAP00000006343/1-293 Len: 333 Check: 5194 Weight: 1.00 // 1 50 bmy_07792T0/1-277 MLGISVTYSG TYKPTGSKHR ARAAPDPPPL FDDTSGGYSS QPGGYPAPGA ENSTTRP00000013665/1-297 -----MAYHS GYVAHGSKHR ARAAPDPPPL FDDTSGVYSS QPGGYPAPGA BACU020207/1-293 -----MAYHS GYGAHGSKHR ARAAPDPPPL FDDTSGGYSS QPGGYPAPGA ENSP00000366098/1-293 -----MAYHS GYGAHGSKHR ARAAPDPPPL FDDTSGGYSS QPGGYPATGA ENSBTAP00000006343/1-293 -----MAYHS GYGAHGSKHR ARAAPDPPPL FDDTSGGYSS QPGGYPAPGA 51 100 bmy_07792T0/1-277 DVAFNVNHLI GDPMANMAMT YGSSIASHGK DMVHKELHRF VSVNKLKYFF ENSTTRP00000013665/1-297 DVAFNVNHLI GDPVANMAMA YGGSIASHGK DMVHKELHRF VSVNKLKYFF BACU020207/1-293 DVAFNVNHLI GDPMANMAMT YGSSIASHGK DMVHKELHRF VSVNKLKYFF ENSP00000366098/1-293 DVAFSVNHLL GDPMANVAMA YGSSIASHGK DMVHKELHRF VSVSKLKYFF ENSBTAP00000006343/1-293 DVAFNVNHLL GDPMANMAMA YGSSIASHGK DMMNKELHRF VSVNKLKYFF 101 150 bmy_07792T0/1-277 AVDTAYVAKK LGLLVFPYT- ---HQNWEVQ YSRDVPLPPR QDLNAPDLYI ENSTTRP00000013665/1-297 AVDTAYVAKK LGLLVFPYTH QCHHQNWEVQ YSRDVPLPPR QDLNAPDLYI BACU020207/1-293 AVDTAYVAKK LGLLVFPYT- ---HQNWEVQ YSRDVPLPPR QDLNAPDLYI ENSP00000366098/1-293 AVDTAYVAKK LGLLVFPYT- ---HQNWEVQ YSRDAPLPPR QDLNAPDLYI ENSBTAP00000006343/1-293 AVDTAYVAKK LGLLVFPYT- ---HQNWEVQ YSRDVPLPPR QDLNAPDLYI 151 200 bmy_07792T0/1-277 PTMAFITYVL LAGMALGIQK R--------- ---------- ---------- ENSTTRP00000013665/1-297 PTMAFITYVL LAGMALGIQK RFSPEVLGLC ASTALVWVVM EVLVLLLGVY BACU020207/1-293 PTMAFITYVL LAGMALGIQK RFSPEVLGLC ASTALVWVVM EVLALLLGVY ENSP00000366098/1-293 PTMAFITYVL LAGMALGIQK RFSPEVLGLC ASTALVWVVM EVLALLLGLY ENSBTAP00000006343/1-293 PTMAFITYVL LAGMALGIQK RFSPEVLGLC ASTALVWVVM EVLALLLGIY 201 250 bmy_07792T0/1-277 ---------- ---------- ---MILSVLT GLLFGSDGYY VALAWTSSAL ENSTTRP00000013665/1-297 LATVRSDLST FHLLAYSGYK YVGMILSVLT GLLFGSDGYY VALAWTSSAL BACU020207/1-293 LATVRSDLST FHLLAYSGYK YVGMILSVLT GLLFGSDGYY VALAWTSSAL ENSP00000366098/1-293 LATVRSDLST FHLLAYSGYK YVGMILSVLT GLLFGSDGYY VALAWTSSAL ENSBTAP00000006343/1-293 LATVRSDLST FHLLAYSGYK YVGMILSVLT GLLFGSDGYY VALAWTSSAL 251 300 bmy_07792T0/1-277 MYFIVSLGLA PLLLGLELGT SFPFPAQLQL SPLFQVRSLR TAALGPNSMG ENSTTRP00000013665/1-297 MYFI------ ---------- ---------- -----VRSLR TAALGPDSMG BACU020207/1-293 MYFI------ ---------- ---------- -----VRSLR TAALGPDSMG ENSP00000366098/1-293 MYFI------ ---------- ---------- -----VRSLR TAALGPDSMG ENSBTAP00000006343/1-293 MYFI------ ---------- ---------- -----VRSLR TAALGPDSMG 301 350 bmy_07792T0/1-277 VTAPRQHLQL YLTLGAAAFQ PLVIYWLTFH LVR ENSTTRP00000013665/1-297 GPAPRQRLQL YLTLGAAAFQ PLMIYWLTFH LVR BACU020207/1-293 VPAPRQHLQL YLTLGAAAFQ PLVIYWLTFH LVQ ENSP00000366098/1-293 GPVPRQRLQL YLTLGAAAFQ PLIIYWLTFH LVR ENSBTAP00000006343/1-293 GPAPRQRLQL YLTLGAAAFQ PLIIYWLTFH LVR