KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:09 2014 Check: 00 .. Name: ENSP00000265707/1-739 Len: 875 Check: 8126 Weight: 1.00 Name: bmy_06097T0/1-714 Len: 875 Check: 2366 Weight: 1.00 Name: ENSBTAP00000006346/1-736 Len: 875 Check: 9123 Weight: 1.00 Name: BACU007440/1-456 Len: 875 Check: 2048 Weight: 1.00 Name: ENSTTRP00000010159/1-723 Len: 875 Check: 1320 Weight: 1.00 // 1 50 ENSP00000265707/1-739 ---------- ---------M FLLLALL--- ---------- ---------T bmy_06097T0/1-714 MLDKESTLCF KGPVSQQLRV FLAHPLCGQR IYEVRHCPGC IPQRRERNRS ENSBTAP00000006346/1-736 ---------- ---------M FLLLALL--- ---------- ---------A BACU007440/1-456 ---------- ---------M FVLLALL--- ---------- ---------A ENSTTRP00000010159/1-723 ---------- ---------M FLLVALL--- ---------- ---------A 51 100 ENSP00000265707/1-739 ELGRLQAHEG SEGIFLHVTV PRKIKSNDSE VSERKMIYII TIDGQPYTLH bmy_06097T0/1-714 QRGYGNEQDD SEGMFLYVTV PQKMRSNESE DSEKQVTYII TIDKKPYTLH ENSBTAP00000006346/1-736 ALGGLLASQD SEGMFLYVTV PQKISSNESE DWEKQVTYII TIDNKPYTLH BACU007440/1-456 ELGGLHALQD SEGMFLYVTV PQKMRSNESE DSEKQVTYII TIDKKPYTLH ENSTTRP00000010159/1-723 ELGGLHALQD SEGIFLYVTV PQKMRSNESE DSEKQVTYII TIDKKPYTLH 101 150 ENSP00000265707/1-739 LGKQSFLPQN FLVYTYNETG SLHSVSPYFM MHCHYQGYAA EFPNSFVTLS bmy_06097T0/1-714 LRKHSFVSQN FLVYTYNETG SLHSESSYFK MHCHYQGYVA DFPNSVVTLS ENSBTAP00000006346/1-736 LRKHSFVSQN FLVYTYNETG SLHSESSYFK MPCHYQGYIA GFPNSVVTLS BACU007440/1-456 LRKHSFISQN FLVYTYNKIG SLHSESSYFK MHCHYQGYVA DFPNSVVTLS ENSTTRP00000010159/1-723 LRKHSFVSQN FLVYTYNETG SLHSESSYFK MHCHYQGYVA DFPNSVVTLS 151 200 ENSP00000265707/1-739 ICSGLRGFLQ FENISYGIEP VESSARFEHI IYQMKNNDPN VSILAVNYSH bmy_06097T0/1-714 ICSGLRGFLQ FENISYGIEP LESSARFEHI IYQVKNDNPD MPMLAENYSN ENSBTAP00000006346/1-736 ICSGLRGFLQ FENISYGIEP LEFSARFEHI IYQVKNDHPD KPMFAENYSN BACU007440/1-456 ICSGLRGFLQ FENISYGIEP LESSARFEHI IYQVKNDNPD MPMLAENYSN ENSTTRP00000010159/1-723 ICSGLRGFLQ FENISYGIEP LESSARFEHI IYQVKNDNPD MPMLAENYSN 201 250 ENSP00000265707/1-739 IWQKDQPYKV PLNSQIKNLS KLLPQYLEIY IIVEKALYDY MGSEMMAVTQ bmy_06097T0/1-714 IWQKDQPYKI XLNSQEKTLS ELLPQYLEMH IVVEKALHDY MGSETMAVMK ENSBTAP00000006346/1-736 IWQKDQSYTI HLSSQEKTFS ELLPQYLEMH IIVEKALYDY MGSEMMAVTQ BACU007440/1-456 IWQKDQPCKI HLNSQEKTLS ELLPQYLEMH IIVEKALHDY MGSETMAVMQ ENSTTRP00000010159/1-723 IWQRDQPYKV HLNSQEKTLS ELLPQYLEMH IIVDKALHDY MGSETMAVMQ 251 300 ENSP00000265707/1-739 KIVQVIGLVN TMFTQFKLTV ILSSLELWSN ENQISTSGDA DDILQRFLAW bmy_06097T0/1-714 KIIQLIGLVN TL-------- ---------- -----SVGPL ENVKENIAV- ENSBTAP00000006346/1-736 KIIQIIGLVN AMFSQFKLTV ILSSLELWSD KNQISTIGDA DDLLQRFLAW BACU007440/1-456 KIIQLIGLVN TMFSQFKLTV ILSSLELWSD KNQISTNGNA DDLLQRFLTW ENSTTRP00000010159/1-723 KMIQLIGLVN TMFSQFKLTV ILSSLELWSD KNQISTNGDA DDLLQRFLTW 301 350 ENSP00000265707/1-739 KRDYLILRPH DIAYLLVYRK HPKYVGATFP GTVCNKSYDA G-IAMYPDAI bmy_06097T0/1-714 ---------- ---------- ---------- ---------- --ATEYPGAI ENSBTAP00000006346/1-736 KQDYLILRPH DVTLLLIYRK QPKYVGATFP GTICNRSYDA D-VAVYPGTI BACU007440/1-456 KQDYLILRPH DVTFLL---- ---------- ---------- ---------- ENSTTRP00000010159/1-723 KQDYLILRPH DVTFLLIYRK QPKYVGATFP GTICNKSCDA GMLXXYPGAI 351 400 ENSP00000265707/1-739 GLEGFSVIIA QLLGLNVGLT YDDITQCFCL RATCIMNHEA VSASGRKIFS bmy_06097T0/1-714 TLEGFSVIIA QLLGLKIGLT YDDIHKCSCP SAMCIMNHEA VVSSGIKIFS ENSBTAP00000006346/1-736 TLEGFSVIIA QLLGLKIGLA YDDIQECSCP TAKCIMNHEA VLSSGVKIFS BACU007440/1-456 ---------- ---------- ---------- ---------- MVSSGIKIFS ENSTTRP00000010159/1-723 TLEGFSVIIA QLLGLKIGLT YDDIRKCSCP SAMCIMNHEA VVSSGVKMFS 401 450 ENSP00000265707/1-739 NCSMHDYRYF VSKFETKCLQ KLSNLQPLHQ NQPVCGNGIL ESNEECDCGN bmy_06097T0/1-714 NCSMRDYRYF VSTFEGQCLQ NFSKLKPLYQ NQSVCGNGIL EPQEECDCDS ENSBTAP00000006346/1-736 NCSMHEYRYF VSTFEAQCLQ KFSILKPFYQ NQSVCGNGIL EAHEECDCGS BACU007440/1-456 NCSMRDYRYF VSTFEGQCLQ NFSKLKPLYQ NQSVCGNGIL EPQEECDCDS ENSTTRP00000010159/1-723 NCSMRDYRYF VSTFEGQCLQ NFSKLKPLYQ NQSVCGNGIL EPQEECDCDS 451 500 ENSP00000265707/1-739 KNECQFKKCC DYNTCKLKGS VKCGSGPCCT SKCE-LSIAG TPCRKSIDPE bmy_06097T0/1-714 EQECPFKNCC DYNTCKLKGS VKCGSGSCCT SKCEVLKVLH LPVLKKL--- ENSBTAP00000006346/1-736 EQECQFKNCC DYNTCQLKGP VQCASGSCCT SKCE-ISVAG TPCRKSVDPE BACU007440/1-456 EQ-------- ---------- ---------- -----ISVAG TPCRKSVDPE ENSTTRP00000010159/1-723 EQDCQFKDCC DYNTCKLKGS VKCGSGSCCT SKCE-ISAAG TPCRKSVDQE 501 550 ENSP00000265707/1-739 CDFTEYCNGT SSNCVPDTYA LNGRLCKLGT AYCYNGQCQT TDNQCAKIFG bmy_06097T0/1-714 ---------- ----ILCVIV LETVVLKIPN HYLVN----- ---------- ENSBTAP00000006346/1-736 CDFTEYCNGT SSNCVPDTYA MNGQLCRLGN AYCYNGRCQT TDNQCAKVFG BACU007440/1-456 CDFTEYCNGT SSNCIPDTYA MNGQLCRLGT AYCYNGRCQT TDNQCAKIFG ENSTTRP00000010159/1-723 CDFTEYCNGT SSDCIPDTYA MNGQLCRLGT AYCYNGRCQT TDNQCAKIFG 551 600 ENSP00000265707/1-739 KGAQGAPFAC FKEVNSLHER SENCGFKNSQ PLPCERKDVL CGKLACVQPH bmy_06097T0/1-714 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006346/1-736 KGAQGAPSAC FEEVNSLPNS FGNCGFKNSQ PLPCEQKDVL CGKLACVWPQ BACU007440/1-456 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000010159/1-723 KGAQGAPFAC FEEVNSLRNS LGNCGFKNSQ PLPCEQKDVL CGKLACVWPH 601 650 ENSP00000265707/1-739 KNANKSDAQS TVYSYIQDHV CVSIATGSSM RSDGTDNAYV ADGTMCGPEM bmy_06097T0/1-714 ---------- RIYSSTQGHV CITI--GSSV RSGGRDYAYV ADGTVCGSQM ENSBTAP00000006346/1-736 NSTYRSDVRS AVYSYSQGLL CVTT--ASSV RSGGRDYTYV ADGTVCGAQM BACU007440/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010159/1-723 NTTYKSDVRS AVYSSTQGHV CITI--GSSV RLGGRDYAYV ADGTVCGPQM 651 700 ENSP00000265707/1-739 YCVNKTCRKV HLMGYNCNAT TKCKGKGICN NFGNCQCFPG HRPPDCKFQF bmy_06097T0/1-714 YCINKTCKEV PLMGYNCNAT TKCRGNGICN NLGNCHCLPG YRPPDCELQI ENSBTAP00000006346/1-736 YCINKTCKEV PLMGYNCNAT IKCRGNGICN NLGNCHCIPD YTPPDCELHI BACU007440/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010159/1-723 YCINKTCKEV PLMGYNCNAT TKCRGNGICN NLGNCHCFPG YRPPDCELQI 701 750 ENSP00000265707/1-739 GSPGGSIDDG NFQKSGDFYT EKGYNTHWNN WFILSFCIFL PFFIVFTTVI bmy_06097T0/1-714 GSPGGSIDDG NDXKSVTIFT KKGYNAX-QN WLILSFYIVL PFFIIFTIMI ENSBTAP00000006346/1-736 GSPGGSIDDG YDHKSYTTFT KKGYNTH-QN WLILSFYIFL PFFIIFTIMI BACU007440/1-456 ---------- -----VTIFT KKGYNAH-QN WLILSFYIVL PFFIIFTIMI ENSTTRP00000010159/1-723 GSPGGSIDDG NDHKSVTIFT KKGYNAH-QN WLILSFYIVL PFFIIFTIMI 751 800 ENSP00000265707/1-739 FKRNEISKSC NRENAEYNR- ---------- ---------- ---------- bmy_06097T0/1-714 MKRNEMRKSC NKESAEYEGI PLKLDTVSYT FVQTIFLYLC VFSSDDLTFN ENSBTAP00000006346/1-736 MKRNEMRKSC NKESVEYEG- ---------- ---------- ---------- BACU007440/1-456 MKRNEMRKSC NKESAEYEG- ---------- ---------- ---------- ENSTTRP00000010159/1-723 MKRNEIRKSC NKESAEYE-- ---------- ---------- ---------- 801 850 ENSP00000265707/1-739 ---------- ---------- ---------- ---------- ---------- bmy_06097T0/1-714 SLKARNPQIN PEIVNDCSFI NPPTRPGMCT IRPSIFVYSF QTLECDFLFN ENSBTAP00000006346/1-736 ---------- ---------- ---------- ---------- ---------- BACU007440/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010159/1-723 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000265707/1-739 ---------- --NSSVVSES DDVGH bmy_06097T0/1-714 SRLQISLPKG KIRSAIVPES HDVEY ENSBTAP00000006346/1-736 ---------- --NKTIIVES DSIGH BACU007440/1-456 ---------- ---------- ----- ENSTTRP00000010159/1-723 ---------- ---------- -----