KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:15 2014 Check: 00 .. Name: BACU001840/1-658 Len: 713 Check: 2831 Weight: 1.00 Name: ENSP00000443176/1-576 Len: 713 Check: 6762 Weight: 1.00 Name: ENSTTRP00000012137/1-572 Len: 713 Check: 9619 Weight: 1.00 Name: bmy_12177T0/1-579 Len: 713 Check: 6503 Weight: 1.00 Name: ENSBTAP00000006361/1-576 Len: 713 Check: 7102 Weight: 1.00 // 1 50 BACU001840/1-658 ---------- ---------- ---------- ---------M GNSCICRDDS ENSP00000443176/1-576 MIVFGWAVFL ASRSLGQGLL LTLEEHIAHF LGTGGAATTM GNSCICRDDS ENSTTRP00000012137/1-572 MIIFGWAVFL ASRSLGQGLL LTLEEHIARF LGTRGATATM GNSCICRDDS bmy_12177T0/1-579 MIIFGWAVFL ASRSLGQGLL LTLEEHIARF LGTRGATATM GNSCICRDDS ENSBTAP00000006361/1-576 MIVFGWAVFL ASRSLGQGLL LTLEEHIARF LGTRSATATM GNSCICRDDS 51 100 BACU001840/1-658 GAEDSVDTQQ QQADNSAVPT ADMRSQPRDP VRPPRRGRGP HEPRRKKQNV ENSP00000443176/1-576 GTDDSVDTQQ QQAENSAVPT ADTRSQPRDP VRPPRRGRGP HEPRRKKQNV ENSTTRP00000012137/1-572 GAY-TVDTQQ QQAD-SAVPT ADMRSQPRDP VPPPRRGRGP HEP-TNKQNV bmy_12177T0/1-579 GAEDSVDTQQ QQADNSAVPT ADMRSQPRDP VRPPRRGRGP HEPRRKKQNV ENSBTAP00000006361/1-576 GAEDSVDTQQ QQADNSAVPT ADMRSQPRDP VRPPRRGRGP HEPRRKKQNV 101 150 BACU001840/1-658 DGLVLDTLAV IRTLVDNDQE PPYSMITLHE MAETDEGWLD VVQSLIRVIP ENSP00000443176/1-576 DGLVLDTLAV IRTLVDNDQE PPYSMITLHE MAETDEGWLD VVQSLIRVIP ENSTTRP00000012137/1-572 HGLVLDTLAV SRTLVYNDQE PPYSMITLHE MAETDEGWLD VVQSLIRVIP bmy_12177T0/1-579 DGLVLDTLAV IRTLVDNDQE PPYSMITLHE MAETDEGWLD VVQSLIRVIP ENSBTAP00000006361/1-576 DGLVLDTLAV IRTLVDNDQE PPYSMITLHE MAETDEGWLD VVQSLIRVIP 151 200 BACU001840/1-658 LEDPLGPAVI TLLLDECPLP TKDALQKLTE ILNLNGEVAC QDSGHPAKHR ENSP00000443176/1-576 LEDPLGPAVI TLLLDECPLP TKDALQKLTE ILNLNGEVAC QDSSHPAKHR ENSTTRP00000012137/1-572 LEDPLGPAVI TLLLDECPLP TKDALQKLTE ILNLNGEVAC QDSGHPAKHR bmy_12177T0/1-579 LEDPLGPAVI TLLLDECPLP TKDALQKLTE ILNLNGEVAC QDSGHPAKHR ENSBTAP00000006361/1-576 LEDPLGPAVI TLLLDECPLP TKDALQKLTE ILNLNGEVAC QDSGHPAKHR 201 250 BACU001840/1-658 NTSAVLGCLA EKLAGPASIG LLSPGILEYL LQCLKLQSHP TVMLFALIAL ENSP00000443176/1-576 NTSAVLGCLA EKLAGPASIG LLSPGILEYL LQCLKLQSHP TVMLFALIAL ENSTTRP00000012137/1-572 NTSAVLGCLA EKLAGPASIG LLSPGILEYL LQCLKLQSHP TVMLFALIAL bmy_12177T0/1-579 NTSAVLGCLA EKLAGPASIG LLSPGILEYL LQCLKLQSHP TVMLFALIAL ENSBTAP00000006361/1-576 NTSAVLGCLA EKLAGPASIG LLSPGILEYL LQCLKLQSHP TVMLFALIAL 251 300 BACU001840/1-658 EKFAQTSENK LTISESSISD RLVTLESWAD DPDYLKRQVG FCAQWSLDNL ENSP00000443176/1-576 EKFAQTSENK LTISESSISD RLVTLESWAN DPDYLKRQVG FCAQWSLDNL ENSTTRP00000012137/1-572 EKFAQTSENK LTISESSISD RLVTLESWAD DPDYLKRQVG FCAQWSLDNL bmy_12177T0/1-579 EKFAQTSENK LTISESSISD RLVTLESWAD DPDYLKRQVG FCAQWSLDNL ENSBTAP00000006361/1-576 EKFAQTSENK LTISESSISD RLVTLESWTD DPDYLKRQVG FCAQWSLDNL 301 350 BACU001840/1-658 FLKEGRQLTY EKVDLNSIKA MLNSNDVSEY LKISPHGLEA RCDASSFESV ENSP00000443176/1-576 FLKEGRQLTY EKVNLSSIRA MLNSNDVSEY LKISPHGLEA RCDASSFESV ENSTTRP00000012137/1-572 FLKEGRQLTY EKVDLNSIKA MLNSNDVSEY LKISPHGL-A RCDASSFESV bmy_12177T0/1-579 FLKEGRQLTY EKVDLNSIKA MLNSNDVSEY LKISPHGLEA RCDASSFESV ENSBTAP00000006361/1-576 FLKEGRQLTY EKVDLNSIKA MLNSNDVSEY LKISPHGLEA RCDASSFESV 351 400 BACU001840/1-658 RCTFCVDAGV WYYEVTVVTS GVMQIGWATR DSKFLNHEGY GIGDDEYSCA ENSP00000443176/1-576 RCTFCVDAGV WYYEVTVVTS GVMQIGWATR DSKFLNHEGY GIGDDEYSCA ENSTTRP00000012137/1-572 RCTFCVDAGV WYYEVTVVTS GVMQIGWATR DSKFLNHEGY GIGDDEYSCA bmy_12177T0/1-579 RCTFCVDAGV WYYEVTVVTS GVMQIGWATR DSKFLNHEGY GIGDDEYSCA ENSBTAP00000006361/1-576 RCTFCVDAGV WYYEVTVVTS GVMQIGWATR DSKFLNHEGY GIGDDEYSCA 401 450 BACU001840/1-658 YDGCRQLIWY NARR------ --------DT VGFLLDLNEK QMIFFLNGNQ ENSP00000443176/1-576 YDGCRQLIWY NARSK---PH IHPCWKEGDT VGFLLDLNEK QMIFFLNGNQ ENSTTRP00000012137/1-572 YDGCRQLIWY NARSK---PH QHPCWKEGDT VGFLLDLNEK QMIFFLNGNQ bmy_12177T0/1-579 YDGCRQLIWY NARTESPYPN SVSLYPLGDT VGFLLDLNEK QMIFFLNGNQ ENSBTAP00000006361/1-576 YDGCRQLIWY NARSK---PH LHPCWKEGDT VGFLLDLNEK QMIFFLNGNQ 451 500 BACU001840/1-658 LPPEKQVFSS TVSGFFAAAS FMSYQQCEFN FGAKPFKYPP SMKFSTFNDY ENSP00000443176/1-576 LPPEKQVFSS TVSGFFAAAS FMSYQQCEFN FGAKPFKYPP SMKFSTFNDY ENSTTRP00000012137/1-572 LPPEKQVFSS TVSGFFAAAS FMSYQQCEFN FGAKPFKYPP SVKFSTFNDY bmy_12177T0/1-579 LPPEKQVFSS TVSGFFAAAS FMSYQQCEFN FGAKPFKYPP SMKFSTFNDY ENSBTAP00000006361/1-576 LPPEKQVFSS TVSGFFAAAS FMSYQQCEFN FGAKPFKYPP SMKFSTFNDY 501 550 BACU001840/1-658 AFLTAEEKII LPRHRRLALL KQVSIRENCC SLCCDEVADT QLKPCGHSSS ENSP00000443176/1-576 AFLTAEEKII LPRHRRLALL KQVSIRENCC SLCCDEVADT QLKPCGHS-- ENSTTRP00000012137/1-572 AFLTAEEKII LPRHRRLALL KQVSIRENCC SLCCDEVADT QLKPCGHS-- bmy_12177T0/1-579 AFLTAEEKII LPRHRRLALL KQVSIRENCC SLCCDEVADT QLKPCGHS-- ENSBTAP00000006361/1-576 AFLTAEEKII LPRHRRLALL KQVSIRENCC SLCCDEVADT QLKPCGHS-- 551 600 BACU001840/1-658 ASDAEFDAVV GYLEDIIMEF DAVVGYLEDI IMDDEFQLLQ RSFMDKYYQE ENSP00000443176/1-576 ---------- ---------- --------DL CMDCALQ--- ---------- ENSTTRP00000012137/1-572 ---------- ---------- --------DL CMDCALQ--- ---------- bmy_12177T0/1-579 ---------- ---------- --------DL CMDCALQ--- ---------- ENSBTAP00000006361/1-576 ---------- ---------- --------DL CMDCALQ--- ---------- 601 650 BACU001840/1-658 FEDTEENKLA YTPIFNEYIS LVEKYIEEQL LERIPGFNMA AFTTTLQHHK ENSP00000443176/1-576 ---------- ---------- ---------- LETCP----- ---------- ENSTTRP00000012137/1-572 ---------- ---------- ---------- LETCP----- ---------- bmy_12177T0/1-579 ---------- ---------- ---------- LETCP----- ---------- ENSBTAP00000006361/1-576 ---------- ---------- ---------- LETCP----- ---------- 651 700 BACU001840/1-658 DEVAGDIFDM LLTFTDFLAF KEMFLDYRAE KEGRGLDLSS GLVVTSLCKS ENSP00000443176/1-576 ---------- ---------- ---------- ---------- ------LCRK ENSTTRP00000012137/1-572 ---------- ---------- ---------- ---------- ------LCRK bmy_12177T0/1-579 ---------- ---------- ---------- ---------- ------LCRK ENSBTAP00000006361/1-576 ---------- ---------- ---------- ---------- ------LCRK 701 750 BACU001840/1-658 SVTASQNNLR P-- ENSP00000443176/1-576 EIVSRIRQIS HIS ENSTTRP00000012137/1-572 EIVSRVRQIS HIS bmy_12177T0/1-579 EIVSRVRQIS HIS ENSBTAP00000006361/1-576 EIVTRVRQIS HIS