KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:16 2014 Check: 00 .. Name: ENSTTRP00000016483/1-644 Len: 712 Check: 3430 Weight: 1.00 Name: ENSP00000362682/1-652 Len: 712 Check: 467 Weight: 1.00 Name: ENSBTAP00000006372/1-655 Len: 712 Check: 7893 Weight: 1.00 Name: bmy_04629T0/1-579 Len: 712 Check: 620 Weight: 1.00 Name: BACU016292/1-695 Len: 712 Check: 1840 Weight: 1.00 // 1 50 ENSTTRP00000016483/1-644 MAAAALS--- -----PRPLP LLL----LLL LLRASPVRAD SK-------- ENSP00000362682/1-652 MAAAALP--- -----PR--P LLLLP--LVL LLSGRPTRAD SK-------- ENSBTAP00000006372/1-655 MAAAALPTRP RSRPGPRPLP LLLLPLLLLL LLRVGPVRAD SK-------- bmy_04629T0/1-579 MAAAALPPRS RPGPGPRPLP LLLLP--LLL LLRASPVRAD SK-------- BACU016292/1-695 MAAAALP--- -----PRPLP LLLLP--LLL LLRASPVRAD SKGLGRPHQD 51 100 ENSTTRP00000016483/1-644 ---------- ---------- ---------- ---------X XXXXXXXXXX ENSP00000362682/1-652 ---------- ---------- ---------- ---------V FGDLDQVRMT ENSBTAP00000006372/1-655 ---------- ---------- ---------- ---------V FGDVDQVRMT bmy_04629T0/1-579 ---------- ---------- ---------- ---------V FGDVDQVRMT BACU016292/1-695 VAPHLRSEGM LQSDVEAAAG GDGRWIMALA FGSPGPLLQV FGDVDQVRMT 101 150 ENSTTRP00000016483/1-644 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362682/1-652 SEGSDCRCKC IMRPLSKDAC SRVRSGRARV EDFYTVETVS SGTDCRCSCT ENSBTAP00000006372/1-655 SEGSDCRCKC IMRPLSKDAC SRVRSGRARV EDFYTVETVS SGTDCRCSCT bmy_04629T0/1-579 SEGSDCRCKC IMRPLSKDAC SRVRSGRARV EDFYTVETVS SGTDCRCSCT BACU016292/1-695 SEGSDCRCKC IMRPLSKDAC SRVRSGRARV EDFYTVETVS SGTDCRCSCT 151 200 ENSTTRP00000016483/1-644 XXXXXXXXXX XXXXXXXXXX XXXXXXXLQS MVDLLEGTLY SMDLMKVHAY ENSP00000362682/1-652 APPSSLNPCE NEWKMEKLKK QAPELLKLQS MVDLLEGTLY SMDLMKVHAY ENSBTAP00000006372/1-655 APPSSLNPCE NEWKMEKLKK QAPELLKLQS MVDLLEGTLY SMDLMKVHAY bmy_04629T0/1-579 APPSSLNPCE NEWKMEKLKK QAPELLKLQS MVDLLEGTLY SMDLMKVHAY BACU016292/1-695 APPSSLNPCE NEWKMEKLKK QAPELLKLQS MVDLLEGTLY SMDLMKVHAY 201 250 ENSTTRP00000016483/1-644 VHKVASQMNT LEESIKANLS RENEVVRESM RHFREQLGHY ENHSAIMMSI ENSP00000362682/1-652 VHKVASQMNT LEESIKANLS RENEVVKDSV RHLSEQLRHY ENHSAIMLGI ENSBTAP00000006372/1-655 VHKVASQMNT LEESIKANLS RENEVVRESM RHFSEQLRHY ENHSAIMMSI bmy_04629T0/1-579 VHKVASQMNT LEESIKANLS QENEVVRESM RHFREQLRHY ENHSAIMMSI BACU016292/1-695 VHKVASQMNT LEESIKANLS QENEVVRESM RHFREQLRHY ENHSAIMMSI 251 300 ENSTTRP00000016483/1-644 KKELSSLGLQ LLQKDAATAP AAAPAPRPGS KAQDTAGGKG RDNNKYGSMQ ENSP00000362682/1-652 KKELSRLGLQ LLQKDAAAAP AT-PATGTGS KAQDTARGKG KDISKYGSVQ ENSBTAP00000006372/1-655 KKELSSLGLQ LLQKDAATAP AAAPAP-AGS KAQDTAGGKG KENNKYGSVQ bmy_04629T0/1-579 KKELSSLGLQ LLQKDAATAP AAAPAPRPGS KAQDTAGGKG KDNNKYGSMQ BACU016292/1-695 KKELSSLGLQ LLQKDAATAP AAAPAPRPGS KAQDTAGGKG KDNNKYGSMQ 301 350 ENSTTRP00000016483/1-644 KSFVDKGLPK PPKEKLLKVE KLKKE-GKGR LPQTTAKPRA LAQQQAVIRG ENSP00000362682/1-652 KSFADRGLPK PPKEKLLQVE KLRKESGKGS FLQPTAKPRA LAQQQAVIRG ENSBTAP00000006372/1-655 KSFVDKGLSK PPKEKLLKVE RLKKE-GKGR FPQPTAKPRA LAQQQAVIRG bmy_04629T0/1-579 KSFVDKGLPK PPKEKLLKVE KLKKE-GKGR FLQTTAKPRA LAQQQAVIRG BACU016292/1-695 KSFVDKGLTK PPKEKLLKVE KLKKE-GKGR FPQTTAKPRA LAQQQAVIRG 351 400 ENSTTRP00000016483/1-644 ITYY-AGRKE MTEAMADNAL KGTSWLEQRP PRVEGR---S EPNSAEREET ENSP00000362682/1-652 FTYYKAGKQE VTEAVADNTL QGTSWLEQLP PKVEGRSNSA EPNSAEQDEA ENSBTAP00000006372/1-655 ITYYKAGRKD TTEPMADNAL KGTSWLEQLP PRVEGR--PP EPNSAEHEEA bmy_04629T0/1-579 ITYYKAGRKE MTEAMA---- ---------- ---------- ---------- BACU016292/1-695 ITYYKAGRKE MTEAMADNAL KGTSWLEQLP PRVEGR--QP EPNSAERDET 401 450 ENSTTRP00000016483/1-644 GPRASEGADL APGTPASDP- ---TPTPTLT PITSPLPTTP PSRPEVPSQG ENSP00000362682/1-652 EPRSSERVDL ASGTPTSIPA TTTTATTTPT PTTSLLPTEP PSGPEVSSQG ENSBTAP00000006372/1-655 APQAPEGADL APGTPASDP- ---TPTP--T PTTSPLPTEP PPRPEVPSQG bmy_04629T0/1-579 ---------- ---------- ---------- ---------- ---------G BACU016292/1-695 GPRASEGADL APGTPASDP- ---TPTPTLT PITSPLPTTP PSRPEVPSQG 451 500 ENSTTRP00000016483/1-644 RETSCEGTLR AVDPPVRHHS YGRHEGAWMK DPAARDDKIY VTNYYYGNSL ENSP00000362682/1-652 REASCEGTLR AVDPPVRHHS YGRHEGAWMK DPAARDDRIY VTNYYYGNSL ENSBTAP00000006372/1-655 RQASCEGTLR AVDPPVRHHS YGRHEGAWMK DPAARDDRIY VTNYYYGNSL bmy_04629T0/1-579 REASCEGTLR AVDPPVRHHS YGRHEGAWMK DPAARDDKIY VTNYYYGNSL BACU016292/1-695 REASCEGTLR AVDPPVRHHS YGRHEGAWMK DPAARDDKIY VTNYYYGNSL 501 550 ENSTTRP00000016483/1-644 VEFRNLENFK QGRWSNMYKL PYNWIGTGHV VYQGAFYYNR AFTKNIIKYD ENSP00000362682/1-652 VEFRNLENFK QGRWSNMYKL PYNWIGTGHV VYQGAFYYNR AFTKNIIKYD ENSBTAP00000006372/1-655 VEFRNLENFK QGRWSNMYKL PYNWIGTGHV VYQGAFYYNR AFTKNIIKYD bmy_04629T0/1-579 VEFRNLENFK QGRWSNMYKL PYNWIGTGHV VYQGAFYYNR AFTKNIIKYD BACU016292/1-695 VEFRNLENFK QGRWSNMYKL PYNWIGTGHV VYQGAFYYNR AFTKNIIKYD 551 600 ENSTTRP00000016483/1-644 LRQRFVASWA MLPDAVYEDT TPWKWRGHSD IDFAVDESGL WVIYPAADDH ENSP00000362682/1-652 LRQRFVASWA LLPDVVYEDT TPWKWRGHSD IDFAVDESGL WVIYPAVDDR ENSBTAP00000006372/1-655 LRQRFVASWA LLPDVVYEDT TPWKWRGHSD IDFAVDESGL WVIYPAVDDR bmy_04629T0/1-579 LRQRFVASWA LLPDAVYEDT TPWKWRGHSD IDFAVDESGL WVIYPAADDH BACU016292/1-695 LRQRFVASWA LLPDAVYEDT TPWKWRGHSD IDFAVDESGL WVIYPTADDH 601 650 ENSTTRP00000016483/1-644 HEAQSEVIVL SRLDPGDLSV HRETTWKTWL RRNSYGNCFL VCGILYAVDT ENSP00000362682/1-652 DEAQPEVIVL SRLDPGDLSV HRETTWKTRL RRNSYGNCFL VCGILYAVDT ENSBTAP00000006372/1-655 DEAQSEVIVL SRLDPGDLSV QRETTWKTRL RRNSYGNCFL VCGILYAVDT bmy_04629T0/1-579 HEAQSEVIVL SRLDPGDLSV HRETTWKTRL RRNSYGNCFL VCGILYAVDT BACU016292/1-695 HEAQSEVIVL SRLDPGDLSV HRETTWKTRL RRNSYGNCFL VCGILYAVDT 651 700 ENSTTRP00000016483/1-644 YNQREGHVAY AFDTHTGTDA RPQLPFLNEH AYTTQIDYNP KERVLYAWDN ENSP00000362682/1-652 YNQQEGQVAY AFDTHTGTDA RPQLPFLNEH AYTTQIDYNP KERVLYAWDN ENSBTAP00000006372/1-655 YNQREGHVAY AFDTHTGTDA RLQLPFLNEH AYTTQIDYNP KERVLYAWDN bmy_04629T0/1-579 YNQREGHVAY AFDTHTGTDA RPQLPFLNEH AYTTQIDYNP KERVLYAWDN BACU016292/1-695 YNQREGHVAY AFDTHTGTDA RPQLPFLNEH AYTTQIDYNP KERVLYAWDN 701 750 ENSTTRP00000016483/1-644 GHQLTYTLHF VV ENSP00000362682/1-652 GHQLTYTLHF VV ENSBTAP00000006372/1-655 GHQLTYTLHF VV bmy_04629T0/1-579 GHQLTYTLHF VV BACU016292/1-695 GHQLTYTLHF VV