KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:17 2014 Check: 00 .. Name: ENSBTAP00000006374/1-1232 Len: 1234 Check: 7867 Weight: 1.00 Name: ENSP00000358495/1-1214 Len: 1234 Check: 8114 Weight: 1.00 Name: ENSTTRP00000002235/1-1099 Len: 1234 Check: 4506 Weight: 1.00 Name: bmy_10614T0/1-1171 Len: 1234 Check: 612 Weight: 1.00 Name: BACU002674/1-1175 Len: 1234 Check: 5608 Weight: 1.00 // 1 50 ENSBTAP00000006374/1-1232 -MSSLLFKQS RIEELEDVIN SDVREPVV-C VSPTGVVSAQ RQVSIQEGPL ENSP00000358495/1-1214 ---------- ---------- MKCFFPVLSC LAVLGVVSAQ RQVTVQEGPL ENSTTRP00000002235/1-1099 EIKCWEKRKR PVLCLLSAAD MKCFLPVLSC LAVLGVVSAQ RQVAVQEGPL bmy_10614T0/1-1171 ---------- ---------- ---------- -----VVSAQ RQVAVQEGPL BACU002674/1-1175 ---------- ---------- ---------- ---------Q RQVAVQEGPL 51 100 ENSBTAP00000006374/1-1232 YRTEGSHITI WCNVSGFQGP SEQNFQWSVY MPKAPEREIQ IISTMDDTFS ENSP00000358495/1-1214 YRTEGSHITI WCNVSGYQGP SEQNFQWSIY LPSSPEREVQ IVSTMDSSFP ENSTTRP00000002235/1-1099 YRTEGSHITI WCNVSGYQGP SEQNFQWSIY LPSAPEREVQ IVSTMDSSFP bmy_10614T0/1-1171 YRTEGSHITI WCNVSGYQGP SEQNFQWSIY LPSAPEREVQ IVSTMDSSFP BACU002674/1-1175 YRTEGSHITI WCNVSGYQGP SEQNFQWSIY LPSSPEREVQ IVSTMDSSFP 101 150 ENSBTAP00000006374/1-1232 YAIYTQRVRS GQIYVERVQG NLALLHIIDL QTRDAGVYEC HTPSTDERYF ENSP00000358495/1-1214 YAIYTQRVRG GKIFIERVQG NSTLLHITDL QARDAGEYEC HTPSTDKQYF ENSTTRP00000002235/1-1099 YAIYTQRVRS GKIYVERVQG NSALLHITDL QARDAGEYEC HTPNTDERYF bmy_10614T0/1-1171 YAIYTQRVRS GKIYVERVQG NSALLHITDL QARDAGEYEC HTPNTDERYF BACU002674/1-1175 YAIYTQRVRS GKIYVERVQG NSALLHITDL QARDAGEYEC HTPNTDERYF 151 200 ENSBTAP00000006374/1-1232 GSYSAKTTVV VIPDTLQATA VPQTLHKVEQ DRLELTCDTS TETLQHSHLS ENSP00000358495/1-1214 GSYSAKMNLV VIPDSLQTTA MPQTLHRVEQ DPLELTCEVA SETIQHSHLS ENSTTRP00000002235/1-1099 GSYSAKMNLM VIPDSLQSTA VRHTLHRVEQ DPLELTCEVA TETLQHSHLS bmy_10614T0/1-1171 GSY------- MIPDSLQSAA VRRTLHKVEQ DPLELTCEVA TETLQHSHLS BACU002674/1-1175 GSYSAKMNLV VIPDSLQSTA VRHTLHKVEQ DPLELTCEVA TETLQHSHLS 201 250 ENSBTAP00000006374/1-1232 VAWLRQRGGE KPVEVIALSR NFVLQSSSDY VQRQSLGEVR LDKLGSTTFR ENSP00000358495/1-1214 VAWLRQKVGE KPVEVISLSR DFMLHSSSEY AQRQSLGEVR LDKLGRTTFR ENSTTRP00000002235/1-1099 VAWLRQRGGE KPVEVIALSR DFVLQSSSDY AQRQSLGEVR LDKLGSSTFR bmy_10614T0/1-1171 VAWLRQRGGE KPVEVIALSR DFVLQSSSDY AQRQSLGEVR LDKLGSSTFR BACU002674/1-1175 VAWLRQRGGE KPVEVIALSR DFVLQSSSDY AQRQSLGEVR LDKLGSSTFR 251 300 ENSBTAP00000006374/1-1232 LTIFHLQPFD QGEFYCEATE WIQDPDGSWY PMTRKRSEGT VVNVQPTDKE ENSP00000358495/1-1214 LTIFHLQPSD QGEFYCEAAE WIQDPDGSWY AMTRKRSEGA VVNVQPTDKE ENSTTRP00000002235/1-1099 LTVFHLQPSD QGEFYCEATE WIQDPDGSWY PMTRKRSEGT VVNVQPTDKE bmy_10614T0/1-1171 LTVFHVQPSD QGEFYCEATE WIQDPDGSWY PMTRKRSEGT VVNVQPTDKE BACU002674/1-1175 LTVFHLQPSD QGEFYCEATE WIQDPDGSWY PMTRKRSEGT VVNVQPTDKE 301 350 ENSBTAP00000006374/1-1232 FTVRLETEKR LYTVGEPMEF RCILEAQNIP DRYFAVSWAF NSSLIASMGP ENSP00000358495/1-1214 FTVRLETEKR LHTVGEPVEF RCILEAQNVP DRYFAVSWAF NSSLIATMGP ENSTTRP00000002235/1-1099 FTVRLETDKR LYTVGEPAEF RCILEGQNTP DRYFAVSWAF NSSLIASMGP bmy_10614T0/1-1171 FTVRLETEKR LYTVGEPVEF RCILEGQNTP DRYFAVSWAF NSSLIASMGP BACU002674/1-1175 FTVRLETEKR LYTVGEPVEF RCILEGQNTP DRYFAVSWAF NSSLIASMGP 351 400 ENSBTAP00000006374/1-1232 NAVPVLNSEF THREARGELQ VAKESDSVFV LKIYHLRQED SGKYNCRVTE ENSP00000358495/1-1214 NAVPVLNSEF AHREARGQLK VAKESDSVFV LKIYHLRQED SGKYNCRVTE ENSTTRP00000002235/1-1099 NAVPVLNSEF THREARGQLK VAKESDNVFV LKIYHLRQED SGKYNCRVTE bmy_10614T0/1-1171 NAVPVLNSEF THREARGQLK VAKESDSVFV LKIYHLRQED SGKYNCRVTE BACU002674/1-1175 NAVPVLNSEF THREARGQLK VAKESDSVFV LKIYHLRQED SGKYNCRVTE 401 450 ENSBTAP00000006374/1-1232 REKTVTGEFI DKESKRPKNI PVIVLPITDN WVVKVPQHHQ ILPQGHLESS ENSP00000358495/1-1214 REKTVTGEFI DKESKRPKNI PIIVLPLTDN WVVKVPQHHQ LLSQGHLESS ENSTTRP00000002235/1-1099 REKTVTGEFI DKESKRPKNI PIIVLPI--- ---------- -------KSS bmy_10614T0/1-1171 REKTVTGEFI DKESKRPRNI PIIVLPI--- ---------- -------KSS BACU002674/1-1175 REKTVTGEFI DKESKRPRNI PIIVLPI--- ---------- -------KSS 451 500 ENSBTAP00000006374/1-1232 IFVDVASNAS VILEGDNLHL TCSIRTTGRP LSRFSVIWQL VDRQNRRSNI ENSP00000358495/1-1214 ISVEVASNAS VILEGEDLRF SCSVRTAGRP QGRFSVIWQL VDRQNRRSNI ENSTTRP00000002235/1-1099 ISVEVASNAS VVLEGENLHL SCSIRTAGRP LGRFSVIWQL VDRQNRRSNI bmy_10614T0/1-1171 ISVEVASNAS VVLEGENLHL SCSIRTAGRA LGRFSVIWQL VDRQNRRSNI BACU002674/1-1175 ISVEVASNAS VVLEGENLHL SCSIRTAGRA LGRFSVIWQL VDRQNRRSNI 501 550 ENSBTAP00000006374/1-1232 VWLDRDGTVQ PGASYWERNS FGGIQMEQVQ PNSFSLSIFN TRKEDEGQYE ENSP00000358495/1-1214 MWLDRDGTVQ PGSSYWERSS FGGVQMEQVQ PNSFSLGIFN SRKEDEGQYE ENSTTRP00000002235/1-1099 MWLDRDGTVQ PGTSYWERSS FGGVQMEQVQ PNSFSLGIFN SRREDEGQYE bmy_10614T0/1-1171 MWLDRDGTVQ PGTSYWERSS FGGVQMEQVQ PNSFSLGIFN SRREDEGQYE BACU002674/1-1175 MWLDRDGTVQ PGASYWERSS FGGVQMEQVQ PNSFSLGIFN SRREDEGQYE 551 600 ENSBTAP00000006374/1-1232 CHVTEWVRAV DNEWQIAGER RASTLVSITA LETGFAVTAI SRTPGVTYND ENSP00000358495/1-1214 CHVTEWVRAV DGEWQIVGER RASTPISITA LEMGFAVTAI SRTPGVTYSD ENSTTRP00000002235/1-1099 CHVTEWVRAV DGEWQVVGER RASTLVSITA LETGFAVTAI SRTPGVTYSD bmy_10614T0/1-1171 CHVTEWVRAV DGEWQVVGER RASTVVSITA LETGFAVTAI SRTPGVTYSD BACU002674/1-1175 CHVTEWVRAV DGEWQVVGER RASTVVSITA LETGFAVTAI SRTPGVTYSD 601 650 ENSBTAP00000006374/1-1232 SFDLQCIIKP HYLSRVPVSV TWRFQPVGTI EFHGLVTFTR DGGVQWGDRS ENSP00000358495/1-1214 SFDLQCIIKP HYPAWVPVSV TWRFQPVGTV EFHDLVTFTR DGGVQWGDRS ENSTTRP00000002235/1-1099 SFDLQCIIKP HYPTRVPVSV TWRFQPVGTA EFHDLVTFTR DGGVQWGDRS bmy_10614T0/1-1171 SFDLQCIIKP HYPARVPVSV TWRFQPVGTA EFHDLVTFTR DGGVQWGDRS BACU002674/1-1175 SFDLQCIIKP HYPARVPVSV TWRFQPVGTA EFHDLVTFTR DGGVQWGDRS 651 700 ENSBTAP00000006374/1-1232 SSFRTRTAIE KAESSNNVRL SISRASDTEA GKYQCVAELW RRNYNNSWMR ENSP00000358495/1-1214 SSFRTRTAIE KAESSNNVRL SISRASDTEA GKYQCVAELW RKNYNNTWTR ENSTTRP00000002235/1-1099 SSFRTRTAIE KAESSNNVRL SISRASDTEA GKYQCVAELW RRNYNNSWTR bmy_10614T0/1-1171 SSFRTRTAIE KAESSNNVRL SISRASDTEA GKYQCVAELW RRNYNNTWTR BACU002674/1-1175 SSFRTRTAIE KAESSNNVRL SISRASDTEA GKYQCVAELW RRNYNNTWTR 701 750 ENSBTAP00000006374/1-1232 LAERTSNLLE IRVLQPVTNL QVSKSKRTLT LVENRPIQLN CSVKSQTSQN ENSP00000358495/1-1214 LAERTSNLLE IRVLQPVTKL QVSKSKRTLT LVENKPIQLN CSVKSQTSQN ENSTTRP00000002235/1-1099 LAERTSNLLE IRVLQPVTKL QVSKSKRTLT LVENRPIQLN CSVKSQTSQN bmy_10614T0/1-1171 LAERTSNLLE IRVLQPVTKL QVSKSKRTLT LVENRPIQLN CSVKSQTSQN BACU002674/1-1175 LAERTSNLLE IRVLQPVTKL QVSKSKRTLT LVENRPIQLN CSVKSQTSQN 751 800 ENSBTAP00000006374/1-1232 SHFAVLWYVH KPSDADGKLI LKTTHNSAFE YGTYAEEEGL RARLQFERHM ENSP00000358495/1-1214 SHFAVLWYVH KPSDADGKLI LKTTHNSAFE YGTYAEEEGL RARLQFERHV ENSTTRP00000002235/1-1099 SHFAVLWYVH KPSDADGKLI LKTTHNSAFE YGTYAEEEGL RARLQFERHV bmy_10614T0/1-1171 SHFAVLWYVH KPSDADGKLI LKTTHNSAFE YGTYAEEEGL RARLQFERHV BACU002674/1-1175 SHFAVLWYVH KPSDADGKLI LKTTHNSAFE YGTYAEEEGL RARLQFERHV 801 850 ENSBTAP00000006374/1-1232 SGGLFSLTVQ RAEVSDSGSY YCHVEEWLLS PNYAWYKLAE EVSGRTEVTV ENSP00000358495/1-1214 SGGLFSLTVQ RAEVSDSGSY YCHVEEWLLS PNYAWYKLAE EVSGRTEVTV ENSTTRP00000002235/1-1099 SGGLFSLTVQ RAEVSDSGSY YCHVEEWLLS PNYAWYKLAE EVSGRTEVTV bmy_10614T0/1-1171 SGGLFSLTVQ RAEVSDSGSY YCHVEEWLLS PNYAWYKLAE EVSGRTEVTV BACU002674/1-1175 SGGLFSLTVQ RAEVSDSGSY YCHVEEWLLS PNYAWYKLAE EVSGRTEVTV 851 900 ENSBTAP00000006374/1-1232 KRPDSRLKLS QEQGNLSVLE TRQVQLECVV LNRTSAASQL LVEWFVWKPN ENSP00000358495/1-1214 KQPDSRLRLS QAQGNLSVLE TRQVQLECVV LNRTSITSQL MVEWFVWKPN ENSTTRP00000002235/1-1099 KQPDSRLKLS QAQGNLSVLE TRQVQLECVV LNRTSAASQL LVEWFVWKPN bmy_10614T0/1-1171 KQPDSRLKLS QAQGNLSVLE TRQVQLECVV LNRTSAASQL LVEWFVWKPN BACU002674/1-1175 KQPDSRLKLS QAQGNLSVLE TRQVQLECVV LNRTSAASQL LVEWFVWKPN 901 950 ENSBTAP00000006374/1-1232 QPERETVARL SRDATFHYGE QAAKNNLKGR LHLESPSPGV YRLFIQNVAV ENSP00000358495/1-1214 HPERETVARL SRDATFHYGE QAAKNNLKGR LHLESPSPGV YRLFIQNVAV ENSTTRP00000002235/1-1099 HPERETLARL SRDATFHYGE QAAKNNLKGR LHLESPSPGV YRLFIQNVAV bmy_10614T0/1-1171 HPERETLARL SRDATFHYGE QAAKNNLKGR LHLESPSPGV YRLFIQNVAV BACU002674/1-1175 HPERETLARL SRDATFHYGE QAAKNNLKGR LHLESPSPGV YRLFIQNVAV 951 1000 ENSBTAP00000006374/1-1232 QDSGTYSCRV EEWLPSPSGM WYKQAEDTAG QMAVRVTRPD AALQVDTVVP ENSP00000358495/1-1214 QDSGTYSCHV EEWLPSPSGM WYKRAEDTAG QTALTVMRPD ASLQVDTVVP ENSTTRP00000002235/1-1099 QDSGTYSCRV EEWLPSPGGT WYRRAEDTAG QTAVQVMRPD AALQVDTVVP bmy_10614T0/1-1171 QDSGTYSCRV EEWLPSPGGT WYRRAEDTAG HTAVRVMRPD AALQVDTVVP BACU002674/1-1175 QDSGTYSCRV EEWLPSPGGT WYRRAEDTAG QTAVRVMRPD AALQVDTVVP 1001 1050 ENSBTAP00000006374/1-1232 NATVFEKAAF QLDCSIVSRS SQDSRFAVAW YSLRTKAGGK RGSPGPEDGE ENSP00000358495/1-1214 NATVSEKAAF QLDCSIVSRS SQDSRFAVAW YSLRTKAGGK RSSPGLEEQE ENSTTRP00000002235/1-1099 NATVSEKAAF QLDCSIVSRS SQDSRFAVAW YSLRTKAGGK RGSPGLEDGE bmy_10614T0/1-1171 NATVSEKAAF QLDCSIVSRS SQDSRFAVAW YSLRTKAGGK RGSPGLEDGE BACU002674/1-1175 NATVSEKAAF QLDCSIVSRS SQDSRFAVAW YSLRTKAGGK RGSPGLEDGE 1051 1100 ENSBTAP00000006374/1-1232 EEEEEEVEVD EEEDEDPTER TALLSVGADA VFGPEGSPWE GRLRFQMLSP ENSP00000358495/1-1214 EEREEEEEED DDDDDDPTER TALLSVGPDA VFGPEGSPWE GRLRFQRLSP ENSTTRP00000002235/1-1099 EVGE---EGE EEEEEDPTER TALLSVGPDA VFGPEGSPWE GRLRFQRLSP bmy_10614T0/1-1171 EEEEEE-EGE EEEEEDPTER TALLSVGPDA VFGPEGSPWE GRLRFQRLSP BACU002674/1-1175 EEEEEEEEGE EEEEEDPTER TALLSVGPDA VFGPEGSPWE GRLRFQRLSP 1101 1150 ENSBTAP00000006374/1-1232 LLYRLTVLQA SPQDTGNYSC RVEEWLPSPQ KEWYRLTEEE SAPIGIRVLD ENSP00000358495/1-1214 VLYRLTVLQA SPQDTGNYSC HVEEWLPSPQ KEWYRLTEEE SAPIGIRVLD ENSTTRP00000002235/1-1099 LLYRLTVLQA SPRDTGNYSC RV-------- ---------- ---------- bmy_10614T0/1-1171 LLYRLTVLQA SPQDTGNYSC RVEEWLPSPQ KEWYRLTEEE SAPIGIRVLD BACU002674/1-1175 LLYRLTVLQA SPQDTGNYSC RVEEWLPSPQ KEWYRLTEEE SAPIGIRVLD 1151 1200 ENSBTAP00000006374/1-1232 TSSTLQSIIC SNDALFYFVF FYPFPIFGIL IITILLVRFK SRNSSKNSEG ENSP00000358495/1-1214 TSPTLQSIIC SNDALFYFVF FYPFPIFGIL IITILLVRFK SRNSSKNSDG ENSTTRP00000002235/1-1099 ---------- ---------- ---------- ---------- ---------- bmy_10614T0/1-1171 TSSTLQSIIC SNDALFYFVF FYPFPIFGIL IITILLVRFK SRNSSKNSDG BACU002674/1-1175 TSSTLQSIIC SNDALFYFVF FYPFPIFGIL IITILLVRFK SRNSSKNSDG 1201 1250 ENSBTAP00000006374/1-1232 KNGVPLLWIK EPHLNYSPTC LEPPVLSIHP GAID ENSP00000358495/1-1214 KNGVPLLWIK EPHLNYSPTC LEPPVLSIHP GAID ENSTTRP00000002235/1-1099 ---------- ---------- ---------- ---- bmy_10614T0/1-1171 KNGVPLLWIK EPHLNYSPTC LEPPVLSIHP GAID BACU002674/1-1175 KNGVPLLWIK EPHLNYSPTC LEPPVLSIHP GAID