KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:19 2014 Check: 00 .. Name: ENSP00000337998/1-1334 Len: 1380 Check: 3465 Weight: 1.00 Name: ENSBTAP00000006377/1-1328 Len: 1380 Check: 7849 Weight: 1.00 Name: BACU008006/1-1355 Len: 1380 Check: 8624 Weight: 1.00 Name: bmy_05771T0/1-1375 Len: 1380 Check: 4005 Weight: 1.00 Name: ENSTTRP00000000942/1-927 Len: 1380 Check: 323 Weight: 1.00 // 1 50 ENSP00000337998/1-1334 ---------- ---------M SEAMDQPAGG PGNPRPGEGD DGSMEPGTCQ ENSBTAP00000006377/1-1328 ---------- ---------- ---MDQSAGS PGNLNPGEGG DGSTEPGTCQ BACU008006/1-1355 MDLADPACPG PAQHLISGLM SEAMDQPAGS PGNPKPGEGG EGSVEPGTCQ bmy_05771T0/1-1375 -----MSVPA WVRRQRQGLM SEAMDQPAGS PGNPKPGEGG EGSMEPSTCQ ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000337998/1-1334 ELLHRLRELE AENSALAQAN ENQRETYERC LDEVANHVVQ ALLNQKDLRE ENSBTAP00000006377/1-1328 ELLHRLRELE AENSALAQAN ENQRETYERC LDEVANHVVQ ALLNQKDLRE BACU008006/1-1355 ELLHRLRELE AENSALAQAN ENQRETYERC LDEVANHVVQ ALLNQKDLRE bmy_05771T0/1-1375 ELLHRLRELE AENSALAQAN ENQRETYERC LDEVANHVVQ ALLNQKDLRE ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000337998/1-1334 ECIKLKKRVF DLERQNQMLS ALFQQKLQLT TGSLPQIPLT PLQPPSEPPA ENSBTAP00000006377/1-1328 ECIKLKKRVF DLERQNQMLS ALFQQKLQLT AGSLPQIPLA PLQPPSEPPA BACU008006/1-1355 ECIKLKKRVF DLERQNQMLS ALFQQKLQLT AGSLPQIPLA PLQLPSEPPA bmy_05771T0/1-1375 ECIKLKKRVF DLERQNQMLS ALFQQKLQLT AGSLPQIPLA PLQLPSEPPA ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000337998/1-1334 SPSLSSTEGP AAPLPLGHCA GQREVCWEQQ LRPGGPGPPA APPPALDALS ENSBTAP00000006377/1-1328 SPSLSSAEGP ATPLPLGRCA GQREVCWEQQ LRSGGPGPPA TPPPALDALS BACU008006/1-1355 TPSLSSAEGP ATSLPLGRCT GQREVCWEQQ LRPGGPGPPA APPPALEALS bmy_05771T0/1-1375 TPSLSSAEGP ATSLPLGRCA GQREVCWEQQ LRPGGPGPPA APPPALEALS ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000337998/1-1334 PFLRKKAQIL EVLRALEETD PLLLCSPATP WRPPGQGPGS PEPINGELCG ENSBTAP00000006377/1-1328 PFLQKKAQIL EVLRALEETD PLLLCSPATP WQPPGEGPGS PEPINGELCG BACU008006/1-1355 PFLRKKAQIL EVLRALEETD PLLLCSPATP WPPPGEGSGS PEPINGELCG bmy_05771T0/1-1375 PFLRKKAQIL EVLRALEETD PLLLCSPATP WPPPGEGSGS PEPINGELCG ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000337998/1-1334 PPQPEPSPWA PCLLLGPGNL GGLLHWERLL GGLGGEEDTG RPWGPSRGPP ENSBTAP00000006377/1-1328 PPQPEPSPWA PYLLLGPGSL GGLLHWERFL GAPGEEEGAG RPWGPGRGSP BACU008006/1-1355 PPQPEPSPWA PCLLLGPGSL GGLLHWERLL GGPGEEDSAG RPWGPSRGSP bmy_05771T0/1-1375 PPQPEPSPWA PYLLLGPGSL GGLLHWERLL GGPGEEERAG RPWGPSRGSP ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000337998/1-1334 QAQGTSSGPN CAPGSSSSSS SDEAGDPNEA PSPDTLLGAL ARRQLNLGQL ENSBTAP00000006377/1-1328 QAQGTGSGPP CAPGSSSSSS SDEAGDPNEA PSPDTLLGAL ARKQLNLGQL BACU008006/1-1355 QAQGTGSGPP CAPGSSSSSS SDEAGDPSEA PSPDTLLGAL ARKQLNLGQL bmy_05771T0/1-1375 QAQGTGSGPP CAPGSSSSSS SDEAGDPSEA PSPDTLLGAL ARKQLNLGQL ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000337998/1-1334 LEDTESYLQA FLAGAAGPLN GDHPGPGQSS SPDQAPPQLS KSKGLPKSAW ENSBTAP00000006377/1-1328 LEDTESYLQA FLAGAACPLS GDHPGPRQPS SPDQGPPQLS KSKGLPKSAW BACU008006/1-1355 LEDTESYLQA FLAGAACPLG GDQPGPRQPS SPDQGPPQLS KSKGLPKSAW bmy_05771T0/1-1375 LEDTESYLQA FLAGAACPLG GDQPGPRQPS SPDQGPPQLS KSKGLPKSAW ENSTTRP00000000942/1-927 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000337998/1-1334 GGGTPEAHRP GFGATSEGQG PLPFLSMFMG AGDAPLGSRP GHPHSSSQVK ENSBTAP00000006377/1-1328 VGGTPEANRP GFGATSEGQG SLPFLSMFMG AGDTPLGSRP GHPHSSSQVK BACU008006/1-1355 GGGTPEAHRP GFGATSEGQG PLPFLSVFMG AGDAPLGSRS GHPHSSSQVK bmy_05771T0/1-1375 GGGTPEAHRP GFGATSEGQG PLPFLSVFMG AGDAPLGSRS GHPHSSSQVK ENSTTRP00000000942/1-927 ---------- ---------- --------MG AGDAPLGSRS GHPHSSSQVK 451 500 ENSP00000337998/1-1334 SKLQIGPPSP GEAQGPLLPS PARGLKFLKL PPTSEKSPSP GGPQLSPQLP ENSBTAP00000006377/1-1328 SKLQIGPPSP GEAQGPLLPS PARGLKFLKL PPASEKVPSP GGPQLSPQLP BACU008006/1-1355 SKLQIGPPSP GEAQGPLLPS PARGLKFLKL PPASEKVPSP GGPQLSPQLP bmy_05771T0/1-1375 SKLQIGPPSP GEAQGPLLPS PARGLKFLKL PPASEKVPSP GGPQLSPQLP ENSTTRP00000000942/1-927 SKLQIGSPSP GEAQGPLLPS PARGLKFLKL PPASEKVPSP GGPQLSPQLP 501 550 ENSP00000337998/1-1334 RNSRIPCRNS GSDGSPSPLL ARRGLGGGEL SPEGAQGLPT SPSPCYTTPD ENSBTAP00000006377/1-1328 RNSRIPCRNS GSDGSPSPLL ARRGLGGGEL SPEGAQGLPT SPSPCSMTPD BACU008006/1-1355 RNSRIPCRNS GSDGSPSPLP ARRGLGGGEL SPEGAQGLPT SPSPCPTTPD bmy_05771T0/1-1375 RNSRIPCRNS GSDGSPSPLP ARRGLGGGEL SPEGAQGLPT SPSPCPTTPD ENSTTRP00000000942/1-927 RNSRIPCRNS GSDGSPSPLP ARRGLGGGEL SPEGLQGLPT SPSPCPTTPD 551 600 ENSP00000337998/1-1334 STQLRPPQSA LSTTLSPGPV VSPCYENILD LSRSTFRGPS PEPPPSPLQV ENSBTAP00000006377/1-1328 SAQLRPPQPA LSATLSPGPT VSPCYENILD LSRNTFRGPS PEPPPSPLQV BACU008006/1-1355 SAQLRPPQPA LSTTLSPGPV VSPCYENILD LSRSTYRGPS PEPPPSPLQV bmy_05771T0/1-1375 SAQLRPPQPA LSTTLSPGPV VSPCYENILD LSRSTFRGPS PEPPPSPLQV ENSTTRP00000000942/1-927 SAQLRPPQPA LSTTLSPGPV VSPCYENILD LSRSTFRGPS PEPPPSPLQV 601 650 ENSP00000337998/1-1334 PTYPQLTLEV PQAPEVLRSP GVPPSPCLPE SYPYGSPQEK SLDKAGSESP ENSBTAP00000006377/1-1328 PTYPQLTLEV PRVPEVLRSP GIPSSPCHPE SCPYEGTQEK SSDKAGSESP BACU008006/1-1355 PTYPQLTLEV PRAPEVLRSP GVPSSPCHPE SCPYESAQEK SLDKAGSESP bmy_05771T0/1-1375 PTYPQLTLEV PRAPEVLRSP GVPSSPCHPE SCPYESAQEK SLDKAGSESP ENSTTRP00000000942/1-927 PTYPQLTLEV PRAPEVLRSP GVPSSPCHPE SCPYESAQEK SLDKAGSESP 651 700 ENSP00000337998/1-1334 HPGRRTPGNS SKKPSQGSGR RPGDPGSTPL RDRLAALGKL KTGPEGALGS ENSBTAP00000006377/1-1328 HPGRRGPGSS SKKPSQGAGR RPGDPGYTPL RDRLAALGKL KTGPEGSQGP BACU008006/1-1355 HPGRRTPGSS SKKPGQGPAR RHGDPGYTPL RDRLAALGKL KTGPEGPQGP bmy_05771T0/1-1375 HPGRRTPGSS SKKPGQGPAR RPGDPGYTPL RDRLAALGKL KTGHEGPQGP ENSTTRP00000000942/1-927 HPGRRTPSSS SKKPGQGPSR RPGDPGYTPL RDRLAALGKL KTGPEGPQGP 701 750 ENSP00000337998/1-1334 EKNGVPARPG TEKTRGPGKS GESAGDMVPS IHRPLEQLEA KGGIRGAVAL ENSBTAP00000006377/1-1328 EKNGVPVKPG TEKARGAGKL GESTGDTAPP ASRPPEQPEA KGALRGAVAL BACU008006/1-1355 EKNGVPARPG TEKARGGGKS GESSGDTAPS ASRPPEQPEA KGALRGAVAL bmy_05771T0/1-1375 EKNGAPARPG TEKARGGGKS GESTGDTAPS ASRPPEQPEA KGALRGAVAL ENSTTRP00000000942/1-927 EKNGVPAKPG TEKARGGGKS GESTGDTAPS ASRPPEQPEA KGALRGAVAL 751 800 ENSP00000337998/1-1334 GTNSLKQQEP GLMGDPGARV YSSHSMGARV DLEPVSPRSC LTKVELAKSR ENSBTAP00000006377/1-1328 GTSSLKQQES GLLGDPGARV YSSHSMGARV DLEPLSPRSC LTKVELAKSR BACU008006/1-1355 GTSSLKQQES GLLGDPGSRV YSSHSMGARV DLEPVSPRSC LTKVELAKSR bmy_05771T0/1-1375 GTSSLKQQES GLLGDPGSRV YSSHSMGARV DLEPVSPRSC LTKVELAKSR ENSTTRP00000000942/1-927 GTSSLKQQES GLLGDPGSRV YSSHSMGARV DLEPVSPRSC LTKVELAKSR 801 850 ENSP00000337998/1-1334 LAGALCPQVP RTPAKVPTSA PSLGKPNKSP HSSPTKLPSK SPTKVVPRPG ENSBTAP00000006377/1-1328 LAGALCPQVP RTPAKVPTSA PSLGKPNKSP HSSPTKLPSK SPTKVVPRPV BACU008006/1-1355 LAGALCPQVP RTPAKVPTSA PSLGKPNKSP HGSPTKLPSK SPTKVVPRPV bmy_05771T0/1-1375 LAGALCPQVP RTPAKVPTSA PSLGKPNKSP HGSPTKLPSK SPTKVVPRPV ENSTTRP00000000942/1-927 LAGALCPQVP RTPAKVPTST PSLGKPNKSP HGSPTKLPSK SPTKVVPRPV 851 900 ENSP00000337998/1-1334 APLVTKESPK PDKGKGPPWA DCGSTTAQST PLVPGPTDPS QGPEGLAPHS ENSBTAP00000006377/1-1328 VPPATKEPPK PDKGKGPPWA DCGGTMAQPM SPAPGAADPG PGPEGRAPHS BACU008006/1-1355 APPATKEPPR PDKGKGPPWA ESGGTTAQPT PPAPGPADPG PGPEGRAPHS bmy_05771T0/1-1375 APPATKEPPK PDKGKGPPWA DCGGATAQPT PPAPGPADPG PGPEGRAPHS ENSTTRP00000000942/1-927 APPATKEAPK PDKGKGPPWA DSSGTTAQPT PPAPGPADPG PGPEGRAPHS 901 950 ENSP00000337998/1-1334 AIEEKVMKGI EENVLRLQGQ ERAPGAEVKH RNTSSIASWF GLKKSKLPAL ENSBTAP00000006377/1-1328 AIEEKVMKGI EENMLRLQGQ ERAPGTEAKH RNTSSIASWF GLKKSKLPAL BACU008006/1-1355 AIEEKVMKGI EENMLRLQGQ ERAPGPEAKH RNTSSIASWF GLKKSKLPGL bmy_05771T0/1-1375 AIEEKVMKGI EENMLRLQGQ ERAPGTEAKH RNTSSIASWF GLKKSKLPAL ENSTTRP00000000942/1-927 AIEEKVMKGI EENMLRLQGQ ERAPGTEAKH RNASSIASWF GLKKSKLPAL 951 1000 ENSP00000337998/1-1334 NRRTEATKNK EGAGGGSPLR REVKMEARKL EAESLNISKL MAKAEDLRRA ENSBTAP00000006377/1-1328 NRRTETTKGK EGA-GGSPLR KEVKVEARKL EAESLNISKL MAKAEDLRRA BACU008006/1-1355 SRRTEAAKGK EGAGGGSPLR KEVKIEARKL EAESLNISKL MAKAEDLRRA bmy_05771T0/1-1375 NRRTEAAKGK EGAGGGSPLR KEVKMEARKL EAESLNISKL MAKAEDLRRA ENSTTRP00000000942/1-927 NRRTEAAKGK EGAGGGSPLR KEVKMEARKL EAESLNISKL MAKAEDLRRA 1001 1050 ENSP00000337998/1-1334 LEEEKAYLSS RARPRPGGPA PGPNTGLGQV QGQLAGMYQG ADTFMQQLLN ENSBTAP00000006377/1-1328 LEEEKAYLSS RARPRPGGPA PGTSAGLGQG QGQLVGMYQG ADTFMQQLLN BACU008006/1-1355 LEEEKAYLSS RARPRPGGPA PGPSAGLGQV QGQLAGMYQG ADTFMQQLLN bmy_05771T0/1-1375 LEEEKAYLSS RARPRPGGPA PGPSAGLGQV QGQLAGMYQG ADTFMQQLLN ENSTTRP00000000942/1-927 LEEEKAYLSS RARPRPGGPA PGPGAGLGQV QGQLAGMYQG ADTFMQQLLN 1051 1100 ENSP00000337998/1-1334 RVDGKELPSK SWREPKPEYG DFQPVSSDPK SPWPACGPRN GLVGPLQGCG ENSBTAP00000006377/1-1328 RVDGKELPPK SWREPKPEYG DFQPVSSDPK NPWPACGPRN GLVGPLQGCG BACU008006/1-1355 RVDGKELPPK SWREPKPEYG DFQPVSSDPK NPWPACGPRN GLVGPLQGCG bmy_05771T0/1-1375 RVDGKELPPK SWREPKPEYG DFQPVSSDPK NPWPACGPRN GLVGPLQGCG ENSTTRP00000000942/1-927 RVDGKELPPK SWREPKPEYG DFQPVSSDPK NPWPACGPRN GLVGPLQGCG 1101 1150 ENSP00000337998/1-1334 KPPGKPSSEP GRREEMPSED SLAEPVPTSH FTACGSLTRT LDSGIGTFPP ENSBTAP00000006377/1-1328 K-PGKPSIEP GRREEMPSED SLAEPVTTSH FTACGSLTRT LDSGIGTFPP BACU008006/1-1355 KPPGKPSSEP GRREEMPSED SLAEPVPTSH FTACGSLTRT LDSGIGTFPP bmy_05771T0/1-1375 KPPGKPSSEP GRREEMPSED SLAEPVPTSH FTACGSLTRT LDSGIGTFPP ENSTTRP00000000942/1-927 KPPGKPSSEP GRREEMPSED SLAEPVPTSH FTACGSLTRT LDSGIGTFPP 1151 1200 ENSP00000337998/1-1334 PDHGSSGTPS KNLPKTKPPR LDPPPGVPPA RPPPLTKVPR RAHTLEREVP ENSBTAP00000006377/1-1328 PDHGSSGTPS KNLPKTKPPR LEPPPGVPPA RPPPLTKVPR RAHTLEREVP BACU008006/1-1355 PDHGSSGTPS KNLPKTKPPR LEPPAGVPPA RPPPLTKVPR RAHTLEREVP bmy_05771T0/1-1375 PDHGSSGTPS KNLPKTKPPR LEPPAGVPPA RPPPLTKVPR RAHTLEREVP ENSTTRP00000000942/1-927 PDHGSSGTPS KNLPKTKPPR LEPPAGVPPA RPPPLTKVPR RAHTLEREVP 1201 1250 ENSP00000337998/1-1334 GIEELLVSGR HPSMPAFPAL LPAAPGHRGH ETCPD----- ---------- ENSBTAP00000006377/1-1328 GIEELLVSGR HPSMPAFPAL LTAAPGHRGH QTCPD----- ---------- BACU008006/1-1355 GIEELLVSGR HPSMPAFPAL LTAAPGHRGH QTCPH----- ---------- bmy_05771T0/1-1375 GIEELLVSGR HPSMPAFPAL LTAAPGHRGH QTCPHGECLG RGVGLSGSST ENSTTRP00000000942/1-927 GIEELLVSGR HPSMPAFPAL LTAAPGHRGH QTCPH----- ---------- 1251 1300 ENSP00000337998/1-1334 ---------- DPCEDPGPTP PVQLAKNWTF PNTRAAGSSS DPLMCPPRQL ENSBTAP00000006377/1-1328 ---------- DPCEDPGPPP PVQLAKNWTF PNARAAGGSS DPFLCPPRQL BACU008006/1-1355 ---------- DPCEDPGPPA PVQLAKNWTF PNARAASGSS DPFLCPPRQL bmy_05771T0/1-1375 HHPSSPCPRI DPCEDPGPPA PVQLAKNWTF PNARAASGSS DPFLCPPRQL ENSTTRP00000000942/1-927 ---------- DPCEDPGPPA PVQLAKNWTF PNARAASGSS DPFLCPPRQL 1301 1350 ENSP00000337998/1-1334 EGLPRTPMAL P--VDRKRSQ EPSRPSPTPQ GPPFGGSRTP STSDMAEEGR ENSBTAP00000006377/1-1328 EGLPRTPMAL P--VDGKRSL EPTRPAPAPQ GPAFGCSRTP STSDVGEEGR BACU008006/1-1355 EGLPRTPMAL PVDVDGKRSL EPSRPAPAPQ GPAFGGSCTP STSDVGEEGR bmy_05771T0/1-1375 EGLPRTPMAL PVDVDGKRSL EPSRPAPAPQ GPAFAGSRTP STSDVGEEGR ENSTTRP00000000942/1-927 EGLPRTPMAL PVDVDGKRSL EPSRPAPAPQ GPAFGGSRTP STSDVGEEGR 1351 1400 ENSP00000337998/1-1334 VASGGPPGLE TSESLSDSLY DSLSSCGSQG ENSBTAP00000006377/1-1328 VASGGPPGLE TSESLSDSLY DSLSSCGSQG BACU008006/1-1355 VASGGPPGLE ASESLSDSLY DSLSSCGSQG bmy_05771T0/1-1375 VASGGPPGLE TSESLSDSLY DSLSSCGSQG ENSTTRP00000000942/1-927 VASGGPPGLE TSESLSDSLY DSLSSCGSQG