KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:20 2014 Check: 00 .. Name: ENSP00000341550/1-500 Len: 501 Check: 4632 Weight: 1.00 Name: ENSBTAP00000006382/1-501 Len: 501 Check: 8371 Weight: 1.00 Name: ENSTTRP00000007625/1-500 Len: 501 Check: 1214 Weight: 1.00 Name: bmy_19514T0/1-487 Len: 501 Check: 7049 Weight: 1.00 Name: BACU003226/1-219 Len: 501 Check: 8107 Weight: 1.00 // 1 50 ENSP00000341550/1-500 MQTKGGQTWA RRALLLGILW ATAHLPLSGT SLPQRLPRAT GNSTQCVISP ENSBTAP00000006382/1-501 MQIKGGPRWA RRALLLGLLW ATAHLPPPGA SLARRLPRAT GNSTQCVISP ENSTTRP00000007625/1-500 MQTKGGPRWA RRALLLGILW ATAHLPPPGA SLPQRLPRAA GNSTQCVMSP bmy_19514T0/1-487 MQTKGGPRWA RRALLLGILW ATAHLPPPGA SLLQRLPRAT GNSTQCVMSP BACU003226/1-219 MQTKGGPRWA RRALLLGILW ATAHLPPPGA SLPQRLPRAT GNSTQCVMSP 51 100 ENSP00000341550/1-500 SSEFPEGFFT RQERRDGGII IYFLIIVYMF MAISIVCDEY FLPSLEIISE ENSBTAP00000006382/1-501 SSEFPEGFFT KQERADGGII IYFLIILYMF MAVSIVCDEY FLPSLEIISE ENSTTRP00000007625/1-500 SSEFPEGFFT KQERADGGII IYFLIILYMF MAMSIVCDEY FLPSLEIISE bmy_19514T0/1-487 SSEFPEGFFT KQERADGGII IYFLIILYMF MAMSIICDEY FLPSLEIISE BACU003226/1-219 SSEFPEGFFT KQERADGGII IYFLIILYMF MAMSIVCDEY FLPSLEIISE 101 150 ENSP00000341550/1-500 SLGLSQDVAG TTFMAAGSSA PELVTAFLGV FITKGDIGIS TILGSAIYNL ENSBTAP00000006382/1-501 SLGLSQDVAG ATFMAAGSSA PELVTAFLGV FITKGDIGIS TILGSAIYNL ENSTTRP00000007625/1-500 SFGLSQNVAG ATFMAAGSSA PELVTAFLGV FITEGDIGIS TILGSAIYNL bmy_19514T0/1-487 YFGLSQNVAG ATFMAAGSSA PELVTAFLGV FITKGDIGIS TILGSAIYNL BACU003226/1-219 YFGLSQNVAG ATFMAAGSSA PELVTAFL-- ---------- ---------- 151 200 ENSP00000341550/1-500 LGICAACGLL SNTVSTLSCW PLFRDCAAYT ISAAAVLGII YDNQVYWYEG ENSBTAP00000006382/1-501 LGICAACGLL SNVVSRLSCW PLFRDCAAYA ISVAALLAII FDNQVYWYEG ENSTTRP00000007625/1-500 XXXXXXXXXX XXXVSTLSCW PLFRDCAAYM ISVAAVLAII FDNQVYWYEG bmy_19514T0/1-487 LGICAACGLL SNVVSTLSCW PLFRDCAAYL ISVAAVLAII FDNQVYWYEG BACU003226/1-219 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000341550/1-500 ALLLLIYGLY VLVLCFDIKI NQYIIKKCSP CCACLAKAM- ERSEQQPLMG ENSBTAP00000006382/1-501 TLLLLIYGLY VVVLCFDIKI NQYIIKKCSP CCTCLVKAIE ERSEQQLLMG ENSTTRP00000007625/1-500 TSLLLIYGLY VLVLCFDIKI NQYIIKKCSP CCTCLAKAME ERSEQQPLMG bmy_19514T0/1-487 TSLLLIYGLY VL-------- ------KCGP CCTCLAKAME ERSEQQPLMX BACU003226/1-219 ---------- ---------- ---------- -------AME ERREQQPLMG 251 300 ENSP00000341550/1-500 WEDEGQPFIR RQSRTDSGIF YEDSGYSQLS ISLHGLSQVS EDPPSVFNMP ENSBTAP00000006382/1-501 WEEEDQPFIR RQSRTDSGIF HEDSGYSQLS LSLHGLSQVC EDPPSVFNMP ENSTTRP00000007625/1-500 WEDEDQPFIR RQSRTDSGVF HEDSGYSQLS ISLHGLSNVS EDPPSVFNMP bmy_19514T0/1-487 WEEEDQPFIR RQSRTDSGIF HEDSGYSQLS ISLHGLSQVS EDPPSVFNMP BACU003226/1-219 WEEEDQPFIR RQSRTDSGIF HEDSGYSQLS ISLHGLSQVS E--------- 301 350 ENSP00000341550/1-500 EADLKRIFWV LSLPIITLLF LTTPDCRKKF WKNYFVITFF MSAIWISAFT ENSBTAP00000006382/1-501 EADLKRIFWV LSLPIIILLF LTTPDCRRKF WRKYFVITFF MSALWISAFT ENSTTRP00000007625/1-500 EADLKRIFWV LSLPIIILLF LTTPDCRRKF WKNYFVITFF MSALWISAFT bmy_19514T0/1-487 EADLKRIFWV LSLPIIILLF LTTPDCRRKF WKNYFVITFF MSALWISAFT BACU003226/1-219 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000341550/1-500 YILVWMVTIT GETLEIPDTV MGLTLLAAGT SIPDTIASVL VARKGKGDMA ENSBTAP00000006382/1-501 YILVWMVTIT GETLEIPDTV MGLTLLAAGT SIPDTIASVL VARKGKGDMA ENSTTRP00000007625/1-500 YILVWMVTIT GETLEIPDTV MGLTLLAAGT SIPDTIARVL -ARKGKGDMA bmy_19514T0/1-487 YILVWMVTIT GETLEIPDTV MGLTLLAAGT SIPDTIASVL VARKGKGDMA BACU003226/1-219 ---------- GETLEIPDTV MGLTLLAAGT SIPDTIASVL VARKGKK--- 401 450 ENSP00000341550/1-500 MSNIVGSNVF DMLCLGIPWF IKTAFINGSA PAEVNSRGLT YITISLNISI ENSBTAP00000006382/1-501 MSNIVGSNVF DMLCLGVPWF IKTAFINPSA PVEVNSRGLT YITIFLNISI ENSTTRP00000007625/1-500 MSNIVGSNVF DMLCLGVPWF IKTAFINASA PVEVNSRGLT YITIFLNISI bmy_19514T0/1-487 MSNIVGSNVF DMLCLGVPWF IKTTFINASA PVEVNSRGLT YITIFLNISV BACU003226/1-219 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000341550/1-500 IFLFLAVHFN GWKLDRKLGI VCLLSYLGLA TLSVLYELGI IGNNKIRGCG ENSBTAP00000006382/1-501 VFLFLAVHLN GWKLDRKLGV VCLLLYLGLT TLSVLYELGI IGNNKIRGCG ENSTTRP00000007625/1-500 IFLLLAVHLN GWKLDRKLGL VCLLLYLGLA TLSVLYELGI IGNNKIRGCG bmy_19514T0/1-487 IFLFLAVHLN GWKLDRKLGA VCLLLYLGLA TLSVLYELGI IGNNKIRGCG BACU003226/1-219 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000341550/1-500 G ENSBTAP00000006382/1-501 D ENSTTRP00000007625/1-500 G bmy_19514T0/1-487 G BACU003226/1-219 -