KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:22 2014 Check: 00 .. Name: BACU005031/1-698 Len: 708 Check: 3505 Weight: 1.00 Name: ENSBTAP00000006404/1-571 Len: 708 Check: 7821 Weight: 1.00 Name: ENSP00000355632/1-571 Len: 708 Check: 8740 Weight: 1.00 Name: ENSTTRP00000014499/1-497 Len: 708 Check: 3534 Weight: 1.00 Name: bmy_20514T0/1-476 Len: 708 Check: 5367 Weight: 1.00 // 1 50 BACU005031/1-698 -------MLV AKKKTCLSPV SLNTEKTNSS VVARPG---Y QQEDWNDIDP ENSBTAP00000006404/1-571 MRRRSRMLLC FAFLWVLGIA YYMYSGGGSA LAAGAGGGAG RKEDWNDIDP ENSP00000355632/1-571 MRRRSRMLLC FAFLWVLGIA YYMYSGGGSA LAGGAGGGAG RKEDWNEIDP ENSTTRP00000014499/1-497 ---------- ---------- ---------- ---------- ---------- bmy_20514T0/1-476 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005031/1-698 IKKKDLHHSN GDEKAQSMET LPPGKVRWRD FNQEAYVGGT MVRSGQDPYA ENSBTAP00000006404/1-571 IKKKDLHHSN GDEKAHSMET LPPGKVRWRD FNQEAYVGGT MVRSGQDPYA ENSP00000355632/1-571 IKKKDLHHSN GEEKAQSMET LPPGKVRWPD FNQEAYVGGT MVRSGQDPYA ENSTTRP00000014499/1-497 ---------- ---------- ----KVRWRD FNQEAYVGGT MVRSGQDPYA bmy_20514T0/1-476 ---------- ---------- ---------- ---------- ---------- 101 150 BACU005031/1-698 RNKFNQVESD KLQMDRAVPD TRHDQCQRKQ WRVDLPATSV VITFHNEARS ENSBTAP00000006404/1-571 RNKFNQVESD KLRMDRAVPD TRHDQCQRKQ WRVDLPATSV VITFHNEARS ENSP00000355632/1-571 RNKFNQVESD KLRMDRAIPD TRHDQCQRKQ WRVDLPATSV VITFHNEARS ENSTTRP00000014499/1-497 RNKFNQVESD KLQMDRAVPD TRHDQCQRKQ WRVDLPATSV VITFHNEARS bmy_20514T0/1-476 ---------- ---------- -----CQRKQ WRVDLPATSV VITFHNEARS 151 200 BACU005031/1-698 ALLRTVVSVL KKSPPRLIKE IILVDDYSND PEDGALLGKI EKVRVLRNDR ENSBTAP00000006404/1-571 ALLRTVVSVL KKSPPHLIKE IILVDDYSND PEDGALLGKI EKVRVLRNDR ENSP00000355632/1-571 ALLRTVVSVL KKSPPHLIKE IILVDDYSND PEDGALLGKI EKVRVLRNDR ENSTTRP00000014499/1-497 ALLRTVVSVL KKSPPRLIKE IILVDDYSND PEDGALLGKI EKVRVLRNDR bmy_20514T0/1-476 ALLRTVVSVL KKSPPRLIKE IILVDDYSND PEDGALLGKI EKVRVLRNDR 201 250 BACU005031/1-698 REGLMRSRVR GADAAQAKVL TFLDSHCECN DHWLEPLLER VAEVRVRAGG ENSBTAP00000006404/1-571 REGLMRSRVR GADAAQAKVL TFLDSHCECN ERWLEPLLER VAEDRTRVVS ENSP00000355632/1-571 REGLMRSRVR GADAAQAKVL TFLDSHCECN EHWLEPLLER VAEDRTRVVS ENSTTRP00000014499/1-497 REGLMRSRVR GADAAQAKVL TFLDSHCECN EYWLEPLLER VAEDRTRVVS bmy_20514T0/1-476 REGLMRSRVR GADAAQAKVL TFLDSHCECN DHWLEPLLER VAEDRTRVVS 251 300 BACU005031/1-698 RASATLSYED FIHRRNLING GNSFVSPGFD WNLVFKWDYM TPEQRRSRQG ENSBTAP00000006404/1-571 PIIDVINMDN F----QYVGA SADLKG-GFD WNLVFKWDYM TPEQRRSRQG ENSP00000355632/1-571 PIIDVINMDN F----QYVGA SADLKG-GFD WNLVFKWDYM TPEQRRSRQG ENSTTRP00000014499/1-497 PIIDVINMDN F----QYVGA SADLKG-GFD WNLVFKWDYM TPEQRRSRQG bmy_20514T0/1-476 PIIDVINMDN F----QYVGA SADLKGAGFD WNLVFKWDYM TPEQRRSRQG 301 350 BACU005031/1-698 NPVAPIKTPM IAGGLFVMDK FYFEELGKYD MMMDVWGGEN LEISFRVWQC ENSBTAP00000006404/1-571 NPVAPIKTPM IAGGLFVMDK FYFEELGKYD MMMDVWGGEN LEISFRVWQC ENSP00000355632/1-571 NPVAPIKTPM IAGGLFVMDK FYFEELGKYD MMMDVWGGEN LEISFRVWQC ENSTTRP00000014499/1-497 NPVAPIKTPM IAGGLFVMDK LYFEELGKYD MMMDVWGGEN LEISFRVWQC bmy_20514T0/1-476 NPVAPIKTPM IAGGLFVMDK FYFEELGKYD MMMDVWGGEN LEISFRVWQC 351 400 BACU005031/1-698 GGSLEIIPCS RVGHVFRKQH PYTFPGGSGT VFARERLRSA SYADTARGLG ENSBTAP00000006404/1-571 GGSLEIIPCS RVGHVFRKQH PYTFPGGSGT VFAR------ ---------- ENSP00000355632/1-571 GGSLEIIPCS RVGHVFRKQH PYTFPGGSGT VFAR------ ---------- ENSTTRP00000014499/1-497 GGSLEIIPCS RVGHVFRKQH PYTFPGGSGT VFAR------ ---------- bmy_20514T0/1-476 GGSLEIIPCS RVGHVFRKQH PYTFPGGSGT VFARERLRSA CYADTARGLG 401 450 BACU005031/1-698 SGLLCAPREP HGRATRPRSP PKHLLSSASS VQTGRRWRKD GDAQLKEMCS ENSBTAP00000006404/1-571 ---------- ---------- ---------- ---------- ---------- ENSP00000355632/1-571 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014499/1-497 ---------- ---------- ---------- ---------- ---------- bmy_20514T0/1-476 SGLLSAPREH HGRATRPPSP PKHLLSSASS VQTGRCWRKD GDAKLKEMCF 451 500 BACU005031/1-698 VSSNTRRAAE VWMDEYKNFY YAAVPSARNV PYGNIQSRLE LRKKLSCKPF ENSBTAP00000006404/1-571 ---NTRRAAE VWMDEYKNFY YAAVPSARNV PYGNIQSRLE LRKKLNCK-- ENSP00000355632/1-571 ---NTRRAAE VWMDEYKNFY YAAVPSARNV PYGNIQSRLE LRKKLSCK-- ENSTTRP00000014499/1-497 ---NTRRAAE VWMDEYKNFY YAAVPSARNV PYGNIQSRLE LRKKLSCK-- bmy_20514T0/1-476 VSSNTRRAAE VWMDEYKNFY YAAVPSARNV PYGNIQSRLE LRRKLSCK-- 501 550 BACU005031/1-698 KWYLENVYPE LSIQSRLELR KKLSCKPFKW YLENVYPELR VPDHQDIAFG ENSBTAP00000006404/1-571 ---------- ---------- ------PFKW YLENVYPELR VPDHQDIAFG ENSP00000355632/1-571 ---------- ---------- ------PFKW YLENVYPELR VPDHQDIAFG ENSTTRP00000014499/1-497 ---------- ---------- ------PFKW YLENVYPELR VPDHQDIAFG bmy_20514T0/1-476 ---------- ---------- ------PFKW YLENVYPELR VPDHQDIAFG 551 600 BACU005031/1-698 ALQQGTNCLD TLGHFADGVV GVYECHNAGG NQSESHLNRG QVGPGDEKRG ENSBTAP00000006404/1-571 ALQQGTNCLD TLGHFADGVV GVYECHNAGG NQ-------- ---------- ENSP00000355632/1-571 ALQQGTNCLD TLGHFADGVV GVYECHNAGG NQ-------- ---------- ENSTTRP00000014499/1-497 ALQQGTNCLD TLGHFADGVV GVYECHNAGG NQ-------- ---------- bmy_20514T0/1-476 ALQQGTNCLD TLGHFADGVV GVYECHNAGG NQ-------- ---------- 601 650 BACU005031/1-698 VNGIFLWKIG PVLRKNKEWA LTKEKSVKHM DLCLTVVDRA PGSLIKLQGC ENSBTAP00000006404/1-571 ---------- -------EWA LTKEKSVKHM DLCLTVVDRA PGSLIKLQGC ENSP00000355632/1-571 ---------- -------EWA LTKEKSVKHM DLCLTVVDRA PGSLIKLQGC ENSTTRP00000014499/1-497 ---------- -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20514T0/1-476 ---------- ---------- ---------- ---------- ---------- 651 700 BACU005031/1-698 RENDSRQKWE QIEGNSKLRH VGSNLCLDSR GAQNGGLSVE VCGPALSQQW ENSBTAP00000006404/1-571 RENDSRQKWE QIEGNSKLRH VGSNLCLDSR AAKTGGLSVE VCGPALSQQW ENSP00000355632/1-571 RENDSRQKWE QIEGNSKLRH VGSNLCLDSR TAKSGGLSVE VCGPALSQQW ENSTTRP00000014499/1-497 XXXXXXXKWE QIEGNSKLRH VGSNLCLDSR GAQNGGLSVE VCGPALSQQW bmy_20514T0/1-476 -------KWE QIEGNSKLRH VGSNLCLDSR GAQNGGLSVE VCGPALSQQW 701 750 BACU005031/1-698 KFSLNLQQ ENSBTAP00000006404/1-571 KFSLNLQP ENSP00000355632/1-571 KFTLNLQQ ENSTTRP00000014499/1-497 KFSLNLQQ bmy_20514T0/1-476 KFSLNLQQ