KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:25 2014 Check: 00 .. Name: ENSP00000366861/1-1137 Len: 1257 Check: 8093 Weight: 1.00 Name: ENSBTAP00000006425/1-1122 Len: 1257 Check: 4377 Weight: 1.00 Name: ENSTTRP00000006367/1-1118 Len: 1257 Check: 6865 Weight: 1.00 Name: bmy_12416T0/1-1067 Len: 1257 Check: 8586 Weight: 1.00 Name: BACU013350/1-680 Len: 1257 Check: 5106 Weight: 1.00 // 1 50 ENSP00000366861/1-1137 MKVKEEKAGV GKLDHTNHRR RFPDQKECPP IHIGLPVPTY PQRKTDQKGH ENSBTAP00000006425/1-1122 MKVEEEEAGV GKLD---YRR RCQDQEDCRS IHIGLSVPSY PHRKRDQKGQ ENSTTRP00000006367/1-1118 MKVEEEKAGV GKLDPPNYRR RCQDQEDCRS IHIGLSVPSY PHRKRDPKGH bmy_12416T0/1-1067 ---------- ---------- ---------- ---------- ---------- BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000366861/1-1137 LSGLQKVHWG LRPDQPQQEL TGPGSGASSQ DSSMDLISRT RSPAAEQLQD ENSBTAP00000006425/1-1122 LPGLQKAHWG LRPDKPQQ-- -----GLASA CGSVDRVSKT RSPAAEQLQD ENSTTRP00000006367/1-1118 FSGLQKVHWG LRPEKPQQ-- -----GLASL -STVDHVIRT RSPAAEQLQD bmy_12416T0/1-1067 ---------- ----MPQQ-- ---------- ---------- ---------- BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000366861/1-1137 ILGEEDEAPN PTLFTEMDTL QHDGDQMEWK ESARWIKFEE KVEEGGERWS ENSBTAP00000006425/1-1122 ILGEEDEAPN PTLFTEMDTL QHDGDQMEWK ESARWIKFEE KVEEGGERWS ENSTTRP00000006367/1-1118 ILGEEDEAPN PTLFTEMDTL QHDGDQMEWK ESARWIKFEE KVEEGGERWS bmy_12416T0/1-1067 ---------- --------CA QHDS------ ----WIKFEE KVEEGGERWS BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000366861/1-1137 KPHVSTLSLH SLFELRTCLQ TGTVLLDLDS GSLPQIIDDV IEKQIEDGLL ENSBTAP00000006425/1-1122 KPHVSTLSLH SLFELRTCLQ TGTVLLDLDG GSLPQIIDDV IEKQIEDGLL ENSTTRP00000006367/1-1118 KPHVSTLSLH SLFELRTCLQ TGTVLLDLDG GSLPQIIDDV IEKQIEDGLL bmy_12416T0/1-1067 KPHVSTLSLH SLFELRTCLQ TGTVLLDLDS GSLPQIIDDV IEKQIEDGLL BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000366861/1-1137 RPELRERVSY VLLRRHRHQT KKPIHRSLAD IGKSV-STTN RSPARSPGAG ENSBTAP00000006425/1-1122 RPELRERVSY VLLRKHRHQT TKPIHRSLAD IGKAVSSTSS RSPARSPKAG ENSTTRP00000006367/1-1118 RPELRERVSY VLLRKHRHQT KKPIHRSLVD IGKSVSSTTN RSPGRSPAAG bmy_12416T0/1-1067 RPELRERVSY VLLRKHRHQT KKPIHRSLVD IGKSVSSTTN RSPGRSPAAG BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000366861/1-1137 PSLHHSTEDL RMRQSANYGR LCHAQSRSMN DISLTPNTDQ RKNKFMKKIP ENSBTAP00000006425/1-1122 PSLHHSTEDL RVRQSANYGR LCHAQSRSMN DISLTPNTDQ RKNKFMKKIP ENSTTRP00000006367/1-1118 PSLHHSTEDL RMRQSANYGR LCHAQSRSMN DISLTPNTDQ RKNKFMKKIP bmy_12416T0/1-1067 PSLHHSTEDL RMRQSANYGR LCHAQSRSMN DISLTPNTDQ RKNKFMKKIP BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000366861/1-1137 KDSEASNVLV GEVDFLDQPF IAFVRLIQSA MLGGVTEVPV PTRFLFILLG ENSBTAP00000006425/1-1122 KDSEASNVLV GEVDFLDQPF IAFVRLIQSA MLGGVTEVPV PTRFLFILLG ENSTTRP00000006367/1-1118 KDSEASNVLV GEVDFLDQPF IAFVRLIQSA MLGGVTEVPV PTRFLFILLG bmy_12416T0/1-1067 KDSEASNVLV GEVDFLDQPF IAFVRLIQSA MLGGVTEVPV PTRFLFILLG BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000366861/1-1137 PSGRAKSYNE IGRAIATLMV DDLFSDVAYK ARNREDLIAG IDEFLDEVIV ENSBTAP00000006425/1-1122 PSGRAKSYNE IGRAIATLMV DDLFSDVAYK ARNREDLIAG IDEFLDEVIV ENSTTRP00000006367/1-1118 PSGRAKSYNE IGRAIATLMV DDLFSDVAYK ARNREDLIAG IDEFLDEVIV bmy_12416T0/1-1067 PSGRAKSYNE IGRAIATLMV DDLFSDVAYK ARNREDLIAG IDEFLDEVIV BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000366861/1-1137 LPPGEWDPNI RIEPPKKVPS ADKRKSVFSL AELGQMNGSV GGGGGAPGGG ENSBTAP00000006425/1-1122 LPPGEWDPNI RIEPPKKVPS ADKRKSVFSL TELGQMNGSV AGGGGG---- ENSTTRP00000006367/1-1118 LPPGEWDPNI RIEPPKKVTS ADKRKSVFSL TELGQMNGSV TGSGGG---- bmy_12416T0/1-1067 LPPGEWDPNI RIEPPKKVTS ADKRKSVFSL TELGQMNGSV TGGGGGAGGG BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000366861/1-1137 NGGGGGGGSG GGAGSGGAGG TSSGDDGEMP AMHEIGEELI WTGRFFGGLC ENSBTAP00000006425/1-1122 -AAGGGAAGG GGG--GGAGG GSGAADGEMP TAHEIGEELI WTGRFFGGLC ENSTTRP00000006367/1-1118 ---GGGGAAG GGG--SGAGG GSSGDDGEMP TVHEIGEELI WTGRFFGGLR bmy_12416T0/1-1067 GGAAGGGGGG GGG--SGAGG GSSGDDGEMP TVHEIGEELI WTGRFFGGLC BACU013350/1-680 ---------- ---------- --------MP TVHEIGEELI WTGRFFGGLC 501 550 ENSP00000366861/1-1137 LDIKRKLPWF PSDFYDGFHI QSISAILFIY LGCITNAITF GGLLGDATDN ENSBTAP00000006425/1-1122 LDVKRKLPWF PSDFYDGFHI QSVSAILFIY LGCITNAITF GGLLGDATDN ENSTTRP00000006367/1-1118 LDVKRKLPWF PSDFYDGFHI QSISAILFIY LGCITNAITF GGLLGDATDN bmy_12416T0/1-1067 LDVKRKLPWF PSDFYDGFHI QSISAILFIY LGCITNAITF GGLLGDATDN BACU013350/1-680 LDVKRKLPWF PSDFYDGFHI QSISAILFIY LGCITNAITF GGLLGDATDN 551 600 ENSP00000366861/1-1137 YQGVMESFLG TAMAGSLFCL FSGQPLIILS STGPILIFEK LLFDFSKGNG ENSBTAP00000006425/1-1122 YQGVMESFLG TAMAGSLFCL FSGQPLIILS STGPILIFEK LLFDFSKGNG ENSTTRP00000006367/1-1118 YQGVMESFLG TAMAGSLFCL FSGQPLIILS STGPILIFEK LLFDFSKGNG bmy_12416T0/1-1067 Y--------- ---------- ---QPLIILS STGPILIFEK LLFDFSKGNG BACU013350/1-680 YQGVMESFLG TAMAGSLFCL FSGQPLIILS STGPILIFEK LLFDFSKGNG 601 650 ENSP00000366861/1-1137 LDYMEFRLWI GLHSAVQCLI LVATDASFII KYITRFTEEG FSTLISFIFI ENSBTAP00000006425/1-1122 LDYMEFRLWI GLHSAVQCLI LVATDASFVI KYITRFTEEG FSTLISFIFI ENSTTRP00000006367/1-1118 LDYMEFRLWI GLHSAVQCLI LVATDASFII KYITRFTEEG FSTLISFIFI bmy_12416T0/1-1067 LDYMEFRLWI GLHSAVQCLI LVATDASFII KYITRFTEEG FSTLISFIFI BACU013350/1-680 LDYMEFRLWI GLHSAVQCLI LVATDASFII KYITRFTEEG FSTLISFIFI 651 700 ENSP00000366861/1-1137 YDAIKKMIGA FKYYPINMDF KPNFITTYKC ECVAPDTVNT TVFNASAPLA ENSBTAP00000006425/1-1122 YDAIKKMIGT FKYYPINMNF KPDSITTYKC ECVAPDTANT TLFNASATLP ENSTTRP00000006367/1-1118 YDAIKKMIGA FKYYPINMNF KPDSITIYKC ECIAPDTANT TAFNASATSP bmy_12416T0/1-1067 YDAIKKMIGA FKYYPINMNF KPDSITIYKC ECVAPDTANT TXFNASATSP BACU013350/1-680 YDAIKKMIGA FKYYPINMNF KPDSITIYKC ECVAPDTANT TAFNASATSP 701 750 ENSP00000366861/1-1137 PDTNASLYNL LNLTALDWSL LSKKECLSYG GRLLGNSCKF IPDLALMSFI ENSBTAP00000006425/1-1122 PNTNTSLYNP LNLTALDWSL LSKKECLNYG GRLLGDSCQF IPDLALMSFI ENSTTRP00000006367/1-1118 PNTNTSLYNP LNLTALDWSL LSKKECLNYG GRLLGNSCQF IPDLALMSFI bmy_12416T0/1-1067 PNTNTSLYNP LNLTALDWSL LSKKECLNYG GRLLGNSCQF IPDLALMSFI BACU013350/1-680 PNTNTSLYNP LNLTALDWSL LSKKECLNYG GRLLGNSCQF IPDLALMSFI 751 800 ENSP00000366861/1-1137 LFFGTYSMTL TLKKFKFSRY FPTKVRALVA DFSIVFSILM FCGIDACFGL ENSBTAP00000006425/1-1122 LFFGTYSMTL TLKKFKFSRY FPTKVRALIA DFSIIFSILL FCGIDACFGL ENSTTRP00000006367/1-1118 LFFGTYSMTL TLKKFKFSRY FPTKVRALVA DFSIIFSILL FCGIDACFGL bmy_12416T0/1-1067 LFFGTYSMTL TLKKFKFSRY FPTKVRALVA DFSIIFSILL FCGIDACFGL BACU013350/1-680 LFFGTYSMTL TLKKFKFSRY FPTKVRALVA DFSIIFSILL FCGVDACFGL 801 850 ENSP00000366861/1-1137 ETPKLHVPSV IKPTRPDRGW FVAPFGKNPW WVYPASILPA LLVTILIFMD ENSBTAP00000006425/1-1122 ATPKLLVPSE IKPTRPDRGW FVAPFGKNPW WVYLASILPA LLVTILIFMD ENSTTRP00000006367/1-1118 ATPKLLVPSV IKPTRPDRGW FVAPFGKNPW WVYLVSILPA LLVTILIFMD bmy_12416T0/1-1067 ATPKLLVPSV IKPTRPDRGW FVAPFGKNPW WVYLVSILPA LLVTILIFMD BACU013350/1-680 ATPKLLVPSV IKPTRPDRGW FVAPFGKNPW WVYLVSILPA LLVTILIFMD 851 900 ENSP00000366861/1-1137 QQITAVIVNR KENKLKKAAG YHLDLFWVGI LMALCSFMGL PWYVAATVIS ENSBTAP00000006425/1-1122 QQITAVIVNR KENKLRKAAG YHLDLFWVGT LMALCSFMGL PWYVAATVIS ENSTTRP00000006367/1-1118 QQITAVIVNR KENKLRKAAG YHLDLFWVGI LMALCSFMGL PWYVAATVIS bmy_12416T0/1-1067 QQITAVIVNR KENKLRKAAG YHLDLFWVGI LMALCSFMGL PWYVAATVIS BACU013350/1-680 QQITAVIVNR KENKLRKAAG YHLDLFWVGI LMALCSFMGL PWYVAATVIS 901 950 ENSP00000366861/1-1137 IAHIDSLKME TETSAPGEQP QFLGVREQRV TGIIVFILTG ISVFLAPILK ENSBTAP00000006425/1-1122 IAHIDSLKME TETSAPGEQP QFLGVREQRV TGTIVFILTG ISVFLAPILQ ENSTTRP00000006367/1-1118 IAHIDSLKME TETSAPGEQP QFLGVREQRV TGTIVFILTG ISVFLAPILQ bmy_12416T0/1-1067 IAHIDSLRME TETSAPGEQP QFLGVREQRV TGTIVFILTG ISVFLAPILQ BACU013350/1-680 IAHIDSLRME TETSAPGEQP QFLGVREQRV TGTIVFILTG ISVFLAPILQ 951 1000 ENSP00000366861/1-1137 CIPLPVLYGV FLYMGVASLN GIQMGTGGSE FKIQKKLTP- FWERCKLFLM ENSBTAP00000006425/1-1122 YIPLPVLYGV FLYMGVASLN GIKTQITLIP MSISLPLSAK FWDRCKLFLM ENSTTRP00000006367/1-1118 YIPLPVLYGV FLYMGVASLN GIQMR-NGSE FKTQIELTP- FWDRCKLFLM bmy_12416T0/1-1067 ---------- ---------- ---------- ---------- FWDRCKLFLM BACU013350/1-680 YIPLPVLYGV FLYMGVASLN GIQ------- ---------- FWDRCKLFLM 1001 1050 ENSP00000366861/1-1137 PAKHQPDHAF LRHVPLRRIH LFTLVQILCL AVLWILKSTV AAIIFPVMIL ENSBTAP00000006425/1-1122 PAKHQPDHAF LRHVPLRRIH LFTLVQILCL AVLWILKSTM AAIIFPVMIL ENSTTRP00000006367/1-1118 PAKHQPDHAF LRHVPLRRIH LFTLVQILCL AVLWILKSTV AAIIFPVMIL bmy_12416T0/1-1067 PAKHQPDHAF LRHVPLRRIH LFTLVQILCL AVLWILKSTM AAIIFPVMIL BACU013350/1-680 PAKHQPDHAF LRHVPLRRIH LFTLVQILCL AVLWILKSTM AAIIFPVMIL 1051 1100 ENSP00000366861/1-1137 GLIIVRRLLD FIFSQHDLAW IDNILPEKEK KETDKKRKRK KGAHEDCDEE ENSBTAP00000006425/1-1122 GLIIVRRLLD LIFSQHDLAW IDNILPEKEK KEADKKKRR- KGAHEDSDEE ENSTTRP00000006367/1-1118 GLIIVRRLLD LIFSQHDLAW IDNILPEKEK KEADKKKR-- KGAHEHSEEE bmy_12416T0/1-1067 GLIIVRRLLD LIFSQHDLAW IDNILPEKEK KEADKKKR-- KGAHEHSDEE BACU013350/1-680 GLIIVRRLLD LIFSQHDLAW IDNILPEKEK KEADKKKR-- KGAHEHSDEE 1101 1150 ENSP00000366861/1-1137 PQFPPPSVIK IPMESVQSDP QNGIHC---- ---------- ---------- ENSBTAP00000006425/1-1122 PQFPPPSVIK IPMESVQSDP QNSIHC---- ---------- ---------- ENSTTRP00000006367/1-1118 PQFPPPSVIK IPMESVQSDP KNGIHC---- ---------- ---------- bmy_12416T0/1-1067 PQFPPPSVIK IPMESVQSDP QNGIHCVAIY PGSSLKDANM GPDPGAPKGL BACU013350/1-680 DKDLPVGVTH SDSSFSDSEL DRSITL---- ---------- ---------- 1151 1200 ENSP00000366861/1-1137 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006425/1-1122 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006367/1-1118 ---------- ---------- ---------- ---------- ---------- bmy_12416T0/1-1067 PLSPKAHTGD PASPHKGPSR KGFPLHPLPE DKDLPVGVTH SDSSFSDSEL BACU013350/1-680 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000366861/1-1137 ---------I ARKRSSSWSY S--------- ---------- ---------- ENSBTAP00000006425/1-1122 --------CI NRQRSSSWSY S--------- ---------- ---------- ENSTTRP00000006367/1-1118 ---------V ARQRSSSWSY S--------- ---------- ---------- bmy_12416T0/1-1067 BRSITLHFKI SCPASPAFSY SQSPVFMVPQ VKIEMEPDCD FTDMERYRRE BACU013350/1-680 ------HFKI SCPASPAFSY SQSPVFMVPQ VKIEMEPDCD FTDMERYRRE 1251 1300 ENSP00000366861/1-1137 ------L ENSBTAP00000006425/1-1122 ------L ENSTTRP00000006367/1-1118 ------L bmy_12416T0/1-1067 ADSETTL BACU013350/1-680 ADSETTL