KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:27 2014 Check: 00 .. Name: ENSBTAP00000006430/1-1239 Len: 1282 Check: 1657 Weight: 1.00 Name: ENSP00000354791/1-1278 Len: 1282 Check: 1840 Weight: 1.00 Name: ENSTTRP00000002242/1-1282 Len: 1282 Check: 970 Weight: 1.00 Name: bmy_12418T0/1-1228 Len: 1282 Check: 5567 Weight: 1.00 Name: BACU013351/1-1256 Len: 1282 Check: 5959 Weight: 1.00 // 1 50 ENSBTAP00000006430/1-1239 ---------- -------MSA EASARPLRVG SRVEVIGKGH RGTVAYVGAT ENSP00000354791/1-1278 MAQSKRHVYS RTPSGSRMSA EASARPLRVG SRVEVIGKGH RGTVAYVGAT ENSTTRP00000002242/1-1282 MAQSKRHVYS RTPSGSRMSA EASARPLRVG SRVEVIGKGY RGTVAYVGAT bmy_12418T0/1-1228 ---------- -------MSA EASARPLRVG SRVEVIGKGY RGTVAYVGAT BACU013351/1-1256 MAQSKRHVYS RTPSGNRMSA EASARPLRVG SRVEVIGKGY RGTVAYVGAT 51 100 ENSBTAP00000006430/1-1239 LFATGKWVGV ILDEAKGKND GTVQGRKYFT CDEGHGIFVR QSQIQVFEDG ENSP00000354791/1-1278 LFATGKWVGV ILDEAKGKND GTVQGRKYFT CDEGHGIFVR QSQIQVFEDG ENSTTRP00000002242/1-1282 LFATGKWVGV ILDEAKGKND GTVQGRKYFT CDEGHGIFVR QSQIQVFEDG bmy_12418T0/1-1228 LFATGKWVGV ILDEAKGKND GTVQGRRYFT CDEGHGIFVR QSQIQVFEDG BACU013351/1-1256 LFATGKWVGV ILDEAKGKND GTVQGRKYFT CDEGHGIFVR QSQIQVFEDG 101 150 ENSBTAP00000006430/1-1239 ADTTSPETPD SSASKVLRRE GADSNPKTSK L--------- ---------- ENSP00000354791/1-1278 ADTTSPETPD SSASKVLKRE GTDTTAKTSK L-RGLKPKKA PTARKTTTRR ENSTTRP00000002242/1-1282 ADTTSPETPD SSASKVLRRE GTDSNAKTSK LVSGLRVGGS SRGKGKESIL bmy_12418T0/1-1228 ADTTSPETPD SSASKVLRRE GTDSNAKTSK L--------- ---------- BACU013351/1-1256 ADTTSPETPD SSASKVLRRE GTDSNAKTSK L--------- ---------- 151 200 ENSBTAP00000006430/1-1239 --PTRPASTG VAGASGSLGP SGSASAGELS SSEPSTPAQT PLAAPIIPTP ENSP00000354791/1-1278 PKPTRPASTG VAGASSSLGP SGSASAGELS SSEPSTPAQT PLAAPIIPTP ENSTTRP00000002242/1-1282 SEPTRPASTG VAGASSSLGP SGSASAGELS SSEPSTPAQT PLAAPIIPTP bmy_12418T0/1-1228 --PTRPASTG VAGTSSSLGP SGSASAGELS SSEPSTPAQT PLAAPIIPTP BACU013351/1-1256 --PTRPASTG VAGASSSLGP SGSASAGELS SSEPSTPAQT PLAAPIIPTP 201 250 ENSBTAP00000006430/1-1239 ALTSPGAALP LPSPSKEEEG LRAQVRDLEE KLETLRLKRA EDKAKLKELE ENSP00000354791/1-1278 VLTSPGAVPP LPSPSKEEEG LRAQVRDLEE KLETLRLKRA EDKAKLKELE ENSTTRP00000002242/1-1282 ALTSPGAAPP LPSPSKEEEG LRAQVRDLEE KLETLRLKRA EDKAKLKELE bmy_12418T0/1-1228 ALTSPGAAPP LPSPSKEEEG LRAQVRDLEE KLETLRLKRA EDKAKLKELE BACU013351/1-1256 ALTSPGAAPP LPSPSKEEEG LRAQVRDLEE KLETLRLKRA EDKAKLKELE 251 300 ENSBTAP00000006430/1-1239 KHKIQLEQVQ EWKSKMQEQQ ADLQRRLKEA RKEAKEALEA KERYMEEMAD ENSP00000354791/1-1278 KHKIQLEQVQ EWKSKMQEQQ ADLQRRLKEA RKEAKEALEA KERYMEEMAD ENSTTRP00000002242/1-1282 KHKIQLEQVQ EWKSKMQEQQ ADLQRRLKEA RKEAKEALEA KERYMEEMAD bmy_12418T0/1-1228 KHKIQLEQVQ EWKSKMQEQQ ADLQRRLKEA RKEAKEALEA KERYMEEMAD BACU013351/1-1256 KHKIQLEQVQ EWKSKMQEQQ ADLQRRLKEA RKEAKEALEA KERYMEEMAD 301 350 ENSBTAP00000006430/1-1239 TADAIEMATL DKEMAEERAE SLQQEAEVLR ERVEELTTDL EILKAEIEEK ENSP00000354791/1-1278 TADAIEMATL DKEMAEERAE SLQQEVEALK ERVDELTTDL EILKAEIEEK ENSTTRP00000002242/1-1282 TADAIEMATL DKEMAEERAE SLQQEVEALK ERVDELTTDL EILKAEIEEK bmy_12418T0/1-1228 TADAIEMATL DKEMAEERAE SLQQEVEALK ERVDELTTDL EILKAEIEEK BACU013351/1-1256 TADAIEMATL DKEMAEERAE SLQQEVEALK ERVDELTTDL EILKAEIEEK 351 400 ENSBTAP00000006430/1-1239 GSDGAASSYQ LKQLEEQNAR LKDALVRMRD LSSSEKQEHV KLQKLMEKKN ENSP00000354791/1-1278 GSDGAASSYQ LKQLEEQNAR LKDALVRMRD LSSSEKQEHV KLQKLMEKKN ENSTTRP00000002242/1-1282 GSDGAASSYQ LKQLEEQNAR LKDALVRMRD LSSSEKQEHV KLQKLMEKKN bmy_12418T0/1-1228 GSDGAASSYQ LKQLEEQNAR LKDALVRMRD LSSSEKQEHV KLQKLMEKKN BACU013351/1-1256 GSDGAASSYQ LKQLEEQNAR LKDALVRMRD LSSSEKQEHV KLQKLMEKKN 401 450 ENSBTAP00000006430/1-1239 QELEVVRQQR ERLQEELSQA ERTIDELKEQ VDAALGAEEM VETLTDRNLD ENSP00000354791/1-1278 QELEVVRQQR ERLQEELSQA ESTIDELKEQ VDAALGAEEM VEMLTDRNLN ENSTTRP00000002242/1-1282 QELEVVRQQR ERLQEELSQA ESTIDELKEQ VDAALGAEEM VEMLTDRNLN bmy_12418T0/1-1228 QELEVVRQQR ERLQEELSQA ESTIDELKEQ VDAALGAEEM VEMLTDRNLN BACU013351/1-1256 QELEVVRQQR ERLQEELSQA ESTIDELKEQ VDAALGAEEM VEMLTDRNLN 451 500 ENSBTAP00000006430/1-1239 LEEKVRKLKE TVGDLEAINE MNDELQENAR ETELELREQL DMAGAQVRDA ENSP00000354791/1-1278 LEEKVRELRE TVGDLEAMNE MNDELQENAR ETELELREQL DMAGARVREA ENSTTRP00000002242/1-1282 LEEKVRELRE TVGDLEAMNE MNDELQENAR ETELELREQL DMAGARVREA bmy_12418T0/1-1228 LEEKVRELRE TVGDLEAMNE MNDELQENAR ETELELREQL DMAGARVREA BACU013351/1-1256 LEEKVRELRE TVGDLEAMNE MNDELQENAR ETELELREQL DMAGARVREA 501 550 ENSBTAP00000006430/1-1239 QKRVEAAQET VADYQQTIKK YRQLTAHLQD VNRALTNQQE ASVERQQQPP ENSP00000354791/1-1278 QKRVEAAQET VADYQQTIKK YRQLTAHLQD VNRELTNQQE ASVERQQQPP ENSTTRP00000002242/1-1282 QKRVEAAQET VADYQQTIKK YRQLTAHLQD VNRELTNQQE ASVERQQQPP bmy_12418T0/1-1228 QKRVEAAQET VADYQQTIKK YRQLTAHLQD VNRELTNQQE ASVERQQQPP BACU013351/1-1256 QKRVEAAQET VADYQQTIKK YRQLTAHLQD VNRELTNQQE ASVERQQQPP 551 600 ENSBTAP00000006430/1-1239 PETFDFKIKF AETKAHAKAI EMELRQMEVA QANRHMSLLT AFMPDSFLRP ENSP00000354791/1-1278 PETFDFKIKF AETKAHAKAI EMELRQMEVA QANRHMSLLT AFMPDSFLRP ENSTTRP00000002242/1-1282 PETFDFKIKF AETKAHAKAI EMELRQMEVA QANRHMSLLT AFMPDSFLRP bmy_12418T0/1-1228 PETFDFKIKF AETKAHAKAI EMELRQMEVA QANRHMSLLT AFMPDSFLRP BACU013351/1-1256 PETFDFKIKF AETKAHAKAI EMELRQMEVA QANRHMSLLT AFMPDSFLRP 601 650 ENSBTAP00000006430/1-1239 GGDHDCVLVL LLMPRLICKA ELIRKQAQEK FELSESCSER PGLRGAAGEQ ENSP00000354791/1-1278 GGDHDCVLVL LLMPRLICKA ELIRKQAQEK FELSENCSER PGLRGAAGEQ ENSTTRP00000002242/1-1282 GGDHDCVLVL LLMPRLICKA ELIRKQAQEK FELSENCSER PGLRGAVGEQ bmy_12418T0/1-1228 GGDHDCVL-- ---------A ELIRKQAQEK FELSENCSER PGLRGAVGEQ BACU013351/1-1256 GGDHDCVLVL LLMPRLICKA ELIRKQAQEK FELSENCSER PGLRGAVGEQ 651 700 ENSBTAP00000006430/1-1239 LSFAAGLVYS LSLLQATLHR YEHALSQCSV DVYKKVGSLY PEMSAHERSL ENSP00000354791/1-1278 LSFAAGLVYS LSLLQATLHR YEHALSQCSV DVYKKVGSLY PEMSAHERSL ENSTTRP00000002242/1-1282 LSFAAGLVYS LSLLQATLHR YEHALSQCSV DMYKKVGSLY PEMSAHERSL bmy_12418T0/1-1228 LSFAAGLVYS LSLLQATLHR YEHALSQCSV DVYKKVGSLY PEMSAHERSL BACU013351/1-1256 LSFAAGLVYS LSLLQATLHR YEHALSQCSV DVYKKVGSLY PEMSAHERSL 701 750 ENSBTAP00000006430/1-1239 DFLIELLHKD QLDETVNVEP LTKAIKYYQH LYSIHLAEQP EDSTMQLADH ENSP00000354791/1-1278 DFLIELLHKD QLDETVNVEP LTKAIKYYQH LYSIHLAEQP EDCTMQLADH ENSTTRP00000002242/1-1282 DFLIELLHKD QLDETVNVEP LTKAIKYYQH LYSIHLSEQP EDSTIQLADH bmy_12418T0/1-1228 DFLIELLHKD QLDETVNVEP LTKAIKYYQH LYSIHLSEQP EDSTIQLADH BACU013351/1-1256 DFLIELLHKD QLDETVNVEP LTKAIKYYQH LYSIHLSEQP EDSTIQLADH 751 800 ENSBTAP00000006430/1-1239 IKFTQSALDC MSVEVGRLRA FLQGGQEASD IALLLRDLET SCSDTRQFCK ENSP00000354791/1-1278 IKFTQSALDC MSVEVGRLRA FLQGGQEATD IALLLRDLET SCSDIRQFCK ENSTTRP00000002242/1-1282 IKFTQSALDC MSVEVGRLRA FLQGGQEASD IALLLRDLET SCSDIRQFCK bmy_12418T0/1-1228 IKFTQSALDC MSVEVGRLRA FLQGGQEASD IALLLRDLET SCSDIRQFCK BACU013351/1-1256 IKFTQSALDC MSVEVGRLRA FLQGGQEASD IALLLRDLET SCSDIRQFCK 801 850 ENSBTAP00000006430/1-1239 KIRRRMPGTD APGIPAALAF GPQVSDTLLD CRKHLTWVVA VLQEVAAAAA ENSP00000354791/1-1278 KIRRRMPGTD APGIPAALAF GPQVSDTLLD CRKHLTWVVA VLQEVAAAAA ENSTTRP00000002242/1-1282 KIRRRMPGTD APGIPAALAF GPQVSDTLLD CRKHLTWVVA VLQEVAAAAA bmy_12418T0/1-1228 KIRRRMPGTD APGIPAALAF GPQVSDTLLD CRKHLTWVVA VLQEVAAAAA BACU013351/1-1256 KIRRRMPGTD APGIPAALAF GPQVSDTLLD CRKHLTWVVA VLQEVAAAAA 851 900 ENSBTAP00000006430/1-1239 QLIAPLAENE GLPVAALEEL AFKASEQIYG TPSSNPYECL RQSCSLLIST ENSP00000354791/1-1278 QLIAPLAENE GLLVAALEEL AFKASEQIYG TPSSSPYECL RQSCNILIST ENSTTRP00000002242/1-1282 QLIAPLAENE GLPVAALEEL AFKAGEQIYG APSGSPYECL RQSCSILIST bmy_12418T0/1-1228 QLIAPLAENE GLPVAALEEL AFKAGEQIYG TPSSSPYECL RQSCNILIST BACU013351/1-1256 QLIAPLAENE GLPVAALEEL AFKAGEQIYG TPSSSPYECL RQSCNILIST 901 950 ENSBTAP00000006430/1-1239 MNKLATAMQE GEYDAERPPS KPPPVELRAA ALRAEITDAE GLGLKLEDRE ENSP00000354791/1-1278 MNKLATAMQE GEYDAERPPS KPPPVELRAA ALRAEITDAE GLGLKLEDRE ENSTTRP00000002242/1-1282 MNKLATAMQE GEYDAERPPS KPPPVELRAA ALRAEITDAE GLGLKLEDRE bmy_12418T0/1-1228 MNKLATAMQE GEYDAERPPS KPPPVELRAA ALRAEITDAE GLGLKLEDRE BACU013351/1-1256 MNKLATAMQE GEYDAERPPS KPPPVELRAA ALRAEITDAE GLGLKLEDRE 951 1000 ENSBTAP00000006430/1-1239 TVIKELKKSL KIKGEELSEA NVRLSLLEKK LDSAAKDADE RIEKVQTRLE ENSP00000354791/1-1278 TVIKELKKSL KIKGEELSEA NVRLSLLEKK LDSAAKDADE RIEKVQTRLE ENSTTRP00000002242/1-1282 TVIKELKKSL KIKGEELSEA NVRLSLLEKK LDSAAKDADE RIEKVQTRLE bmy_12418T0/1-1228 TVIKELKKSL KIKGEELSEA NVRLSLLEKK LDSAAKDADE RIEKVQTRLE BACU013351/1-1256 TVIKELKKSL KIKGEELSEA NVRLSLLEKK LDSAAKDADE RIEKVQTRLE 1001 1050 ENSBTAP00000006430/1-1239 ETQTLLRKKE KEFEETMDAL QADIDQLEAE KAELKQRLNS QSKRTIEGLR ENSP00000354791/1-1278 ETQALLRKKE KEFEETMDAL QADIDQLEAE KAELKQRLNS QSKRTIEGLR ENSTTRP00000002242/1-1282 ETQALLRKKE KEFEETMDAL QADIDQLEAE KAELKQRLNS QSKRTIEGLR bmy_12418T0/1-1228 ETQALLRKKE KEFEETMDAL QADIDQLEAE KAELKQRLNS QSKRTIEGLR BACU013351/1-1256 ETQALLRKKE KEFEETMDAL QADIDQLEAE KAELKQRLNS QSKRTIEGLR 1051 1100 ENSBTAP00000006430/1-1239 GPPPSGIATL VSGIAG---- -GGAPGQAPG SVPGPGLVKD SPLLLQQISA ENSP00000354791/1-1278 GPPPSGIATL VSGIAGEEQQ RGAIPGQAPG SVPGPGLVKD SPLLLQQISA ENSTTRP00000002242/1-1282 GPPPSGIATL VSGIAGEEQQ RGGASGQAPG SVPGPGLVKD SPLLLQQISA bmy_12418T0/1-1228 GPPPSGIATL VSGIAG---- -GGASGQALG SVPGPGLVKD SPLLLQQISA BACU013351/1-1256 GPPPSGIATL VSGIAG---- -GGASGQALG SVPGPGLVKD SPLLLQQISA 1101 1150 ENSBTAP00000006430/1-1239 MRLHISQLQH ENSTLKGAQM KASLAALPPL HVAKLSLPPH EGPGSKLAAG ENSP00000354791/1-1278 MRLHISQLQH ENSILKGAQM KASLASLPPL HVAKLS---H EGPGSELPAG ENSTTRP00000002242/1-1282 MRLHISQLQH ENSILKGAQM KASLAALPPL HVAKLSLLPR EGPGSDLAAG bmy_12418T0/1-1228 MRLHISQLQH ENSILKGAQM KASLAALPPL HVAKLSLLPR EGPGSDLAAG BACU013351/1-1256 MRLHISQLQH ENSILKGAQM KASLAALPPL HVAKLSLLPR EGPGSDLAAG 1151 1200 ENSBTAP00000006430/1-1239 ALYRKTNQLL ETLNQLSACT HVVDITRSNP AAKSPSAQLL EQVAQLKSLS ENSP00000354791/1-1278 ALYRKTSQLL ETLNQLSTHT HVVDITRTSP AAKSPSAQLM EQVAQLKSLS ENSTTRP00000002242/1-1282 VLYRKTNQLL ETLNQLSAHT HVVDITRTSP AAKSPSAQLL EQVAQLKSLS bmy_12418T0/1-1228 VLYRKTNQLL ETLNQLSTHT HVVDITRTSP AAKSPSAQLL EQVAQLKSLS BACU013351/1-1256 VLYRKTNQLL ETLNQLSTHT HVVDITRTSP AAKSPSAQLL EQVAQLKSLS 1201 1250 ENSBTAP00000006430/1-1239 DTIEKLKDEV LKETVSQRPE ATVPTDFATF PSSAFLRAKE EQQDDTVYMG ENSP00000354791/1-1278 DTVEKLKDEV LKETVSQRPG ATVPTDFATF PSSAFLRAKE EQQDDTVYMG ENSTTRP00000002242/1-1282 DTIEKLKDEV LKETVSQRPG ATVPTDFATF PSSAFLRAKE EQQDDTVYMG bmy_12418T0/1-1228 DTIEKLKDEV LKETVSQRPG ATVPTDFATF PSSAFLRAKE EQQDDTVYMG BACU013351/1-1256 DTIEKLKDEV LKETVSQRPG ATVPTDFATF PSSAFLRAKE EQQDDTVYMG 1251 1300 ENSBTAP00000006430/1-1239 KVTFSCAAGL GQRHRLVLTQ EQLHQLHDRL IS ENSP00000354791/1-1278 KVTFSCAAGF GQRHRLVLTQ EQLHQLHSRL IS ENSTTRP00000002242/1-1282 KVTFSCAAGL GQRHRLVLTQ EQLHQLHGRL IS bmy_12418T0/1-1228 KVTFSCAAGL GQRHRLVLTQ EQLHQLHGRL IS BACU013351/1-1256 KVTFSCAAGL GQRHRLVLTQ EQLHQLHGRL IS