KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:28 2014 Check: 00 .. Name: ENSP00000370867/1-693 Len: 750 Check: 7164 Weight: 1.00 Name: ENSBTAP00000006432/1-691 Len: 750 Check: 7313 Weight: 1.00 Name: ENSTTRP00000010156/1-694 Len: 750 Check: 2029 Weight: 1.00 Name: bmy_17140T0/1-735 Len: 750 Check: 2126 Weight: 1.00 Name: BACU010687/1-724 Len: 750 Check: 431 Weight: 1.00 // 1 50 ENSP00000370867/1-693 ---------- ---------- ---------- ---------- MAALGVQSIN ENSBTAP00000006432/1-691 ---------- ---------- ---------- ---------- --MSGLQSVD ENSTTRP00000010156/1-694 ---------- ---------- ---------- ---------- MSALGLQSVD bmy_17140T0/1-735 MQPLEYHYVM GTCQQLSVGL PGTAGENPSP TPANKSSSPP AAALELQSVN BACU010687/1-724 MLGSEKMWRT HSLDLQRV-- --SDGDRP-- ---NQIAPVQ GDAFELKSVN 51 100 ENSP00000370867/1-693 WQTAFNRQAH HTDKFSSQEL ILRRGQNFQV LMIMNKGLGS NERLEFIVST ENSBTAP00000006432/1-691 WQIASNRQAH HTERFYGKDL LVRRGQLFQV SLTLSQGLSS GGRVTFTAST ENSTTRP00000010156/1-694 WQISLNEQAH HTDKFSSQEL VVRRGQLFYM SLTVYRCLGC NRSATFTAST bmy_17140T0/1-735 WQTTYNGQEH HTDKFFSQEL IVRRGQLFSM SLTLYRR--- ---------- BACU010687/1-724 WQTADNGQAH HTDKFFSQEL VVRRGQLFYM SVTLHRSL-S HREVTFTAST 101 150 ENSP00000370867/1-693 GPYPSESAMT KAVFPLSNGS SG-GWSAVLQ ASNGNTLTIS ISSPASAPIG ENSBTAP00000006432/1-691 GPYPSESANT KAVFPLSNGT SSSGWGAQLV SSRNNVLNIS ILSPANAPIG ENSTTRP00000010156/1-694 GPYPSESAKT KAVFPLSNRI SGTGWGAQLL NNKNNVLSIS ILSPADAPIG bmy_17140T0/1-735 -PYPSESTKT KAVFPLSNRI SGTGWSAQLT YNKNNVLSIS ILSPANAPIG BACU010687/1-724 GPYPSESTKT KAVFPLSNKI RGTGWGAQLM YNKNNVLSIS ILSPANAPIG 151 200 ENSP00000370867/1-693 RYTMALQIFS QGGISSVKLG TFILLFNPWL NVDSVFMGNH AEREEYVQED ENSBTAP00000006432/1-691 RYTLNMQISS QGSDSTLKLG TFILLFNPWL QADSVFMSNH AEREEYVQED ENSTTRP00000010156/1-694 RYTLSIEISY EGNDSTTEVG TFILLFNPWL QADSVFMSNH DEREEYVQED bmy_17140T0/1-735 RYTLSIQISS EGNDSTLKLG TFILLFNPWL QADSVFMSNH DEREEYVQED BACU010687/1-724 RYSLSIQISS EGNYSTLKLG TFILLFNPWL QADSVFMSNH DEREEYVQED 201 250 ENSP00000370867/1-693 AGIIFVGSTN RIGMIGWNFG QFEEDILSIC LSILDRSLNF RRDAATDVAS ENSBTAP00000006432/1-691 AGIIFVGSTN RISMIGWNYG QFEEGILNIC LSVLDNSLNF RRDPATDVAH ENSTTRP00000010156/1-694 AGVIFVGRTS YISKIGWNYG QFEEGILNIC LSLLDNSLNF RRDPATDVAR bmy_17140T0/1-735 AGIIFMGRTS YINMIGWNYG QFEEDILNIC LSLLDNSLNF RRDPANDVAR BACU010687/1-724 SGIIFMGRAS YISLIGWNYG QFEEGILNIC LSLLDNSLNF RRDPVNDVAR 251 300 ENSP00000370867/1-693 RNDPKYVGRV LSAMINSNDD NGVLAGNWSG TYTGGRDPRS WNGSVEILKN ENSBTAP00000006432/1-691 RNDPKYVGRV LSAMINGNDD SGVISGNWSG SYTGGRDPRN WNGSVEILKE ENSTTRP00000010156/1-694 RDDPQYIGRV LSAMINANDD YGVISGNWSG NYVGGQDPRN WNGSVEILKQ bmy_17140T0/1-735 RDDPQYIGRV LSAMINANDD HGVVTGNWSG SYVGGQDPRK WNGSVEILRK BACU010687/1-724 RDDPQYIGRV LSAMINNNDD YGVIAGNWSG NYTGGQHPRH WNGSVEILKK 301 350 ENSP00000370867/1-693 WKKSGFSPVR YGQCWVFAGT LNTALRSLGI PSRVITNFNS AHDTDRNLSV ENSBTAP00000006432/1-691 WQRSGFRPVR YGQCWVFAGT LNTVLRCLGI PSRVITNFNS AHDTDQNLSV ENSTTRP00000010156/1-694 WQSSGFRPVR YGQCWVFAGT LNTALRCLGI PSRVITNFNS AHDTDKNLSV bmy_17140T0/1-735 WQISGFRPVR YGQCWVFAGT LNTALRSLGI PSRVITNFNS AHDTDKNLSV BACU010687/1-724 WQISGFRPVR YGQCWVFAGT LNTALRCLGI PSRVITNFSS AHDTDQNLSV 351 400 ENSP00000370867/1-693 DVYYDPMGNP LDKGSDSVWN FHVWNEGWFV RSDLGPSYGG WQVLDATPQE ENSBTAP00000006432/1-691 DVYYDPLGRP MDKGSDSVWN FHVWNEAWFV RSDLGPSYNG WQVLDATPQE ENSTTRP00000010156/1-694 DVYYDPRGWP MDKGSDSVWN FHVWNEGWFA RTDLSPSYSG WQVLDATPQE bmy_17140T0/1-735 DVYYDPRGRP MNKGSDSIWN FHVWNEAWFE RTDLGPSYAG WQVLDATPQE BACU010687/1-724 DVYYDPRGWP MDKGSDSIWN FHVWNEAWFK RTDLSPSYSG WQVLDATPQE 401 450 ENSP00000370867/1-693 RSQ------- ---------G VFQCGPASVI GVREGDVQLN FDMPFIFAEV ENSBTAP00000006432/1-691 RSQ------- ---------G VFQCGPASVI AIREGNVDWD FDMPFIFAEV ENSTTRP00000010156/1-694 RSQ------- ---------G VFQCGPASVV ALREGNVDWD YDMPFIFAEV bmy_17140T0/1-735 MSQDGPGFDM YPTSAPWPPG VFQCGPASVI ALREGNVDWD FDMPFIFAEV BACU010687/1-724 RSQ------- ---------G VFQCGPASVI ALREGNVDWD FDMPFIFAEV 451 500 ENSP00000370867/1-693 NADRITWLYD NTTGKQWKNS VNSHTIGRYI STKAVGSNAR MDVTDKYKYP ENSBTAP00000006432/1-691 NADRITWIYE S-NGALKKNS ADTHSVGKYI STKAVGSNSR MDVTEKYKYP ENSTTRP00000010156/1-694 NADRITWIYD AWTGALKKNF SNTHTIGKNI STKAVGSNSR MDVTENYKYP bmy_17140T0/1-735 NADRITWIYN ARTGGLKKNS SDSYTVGKYI STKAVGSNTR IDVTEKYKYP BACU010687/1-724 NADRITWIYN SWTGSLKKNS SDSDIVGKYI STKAVGSNTR MDVTENYKYP 501 550 ENSP00000370867/1-693 EGSDQERQVF QKALGKLKPN TPFAATSSMG LETEEQEPSI IGKLKVAGML ENSBTAP00000006432/1-691 EGSSQERQVF EKALRKLKPT MSFSATSASS LAREEREPSI SGRFKVAGVL ENSTTRP00000010156/1-694 EGSSQERQVF EKALGKLQPS MSLHATSARV FSREERQPSI SGKFKITDIL bmy_17140T0/1-735 EGSREERQVF EKALGKLKPY MAFRATSAR- LRTEELEPSI SGKFKITGVL BACU010687/1-724 EGSRQERQAF EKALGKLKPY MAFRATAAGR LSTAELKPSI SGKFKITGAL 551 600 ENSP00000370867/1-693 AVGKEVNLVL LLKNLSRDTK TVTVNMTAWT IIYNGTLVHE VWKDSATMSL ENSBTAP00000006432/1-691 TVGKEVNLIL MLKNLTSDTK TVTVNMTAWT IVYNGTLVHE VWKDSVTKSL ENSTTRP00000010156/1-694 TVGKEVNMAL VLRNLTGDSK TVTVNMTAWT IVYNGTLVHE VWKESVTLSL bmy_17140T0/1-735 TVGKEVNLTL MFKNRTSDSK TMMVNMTAWT IVYNGTLVHE VWKDSVTLTL BACU010687/1-724 TVGKEVNLAL MFKNLTSDSK TVMVNMTAWT IVYNGTLVHE VWKDSVTLTL 601 650 ENSP00000370867/1-693 DPEEEAEHPI KISYAQYEKY LKSDNMIRIT AVCKVPDESE VVVERDIILD ENSBTAP00000006432/1-691 NPEEEIEHPV KIAYAQYEKY LKADNMIRTT AVCQVTDEPE VVVERDIILD ENSTTRP00000010156/1-694 GPNEEIQHPV KIAYALYKKY LKADNMIRAT AVCEISDETE VVVERDIILE bmy_17140T0/1-735 GPEEEIQHPV KIAYALYEKY LKADNMIRAT AVCQVTDETE MVVERDIILD BACU010687/1-724 GPEEEIQHPV KIAYALYEKY LKADNMIRAT AVCRVTDETE VVVERDIILD 651 700 ENSP00000370867/1-693 NPTLTLEVLN EARVRKPVNV QMLFSNPLDE PVRDCVLMVE GSGLLLGNLK ENSBTAP00000006432/1-691 NPTLTLEVLD EARVQKPVNV QMLFSNPLDE PVKDCVLMVE GSGLLLGNLK ENSTTRP00000010156/1-694 NPTLTLEVLD QARVQKPVTV QILFSNPLDE LVKDCKLIAE GSGLLQGTLE bmy_17140T0/1-735 NPTLTLEVLD QAQVQKPVTV KVLFSNPLDE LMTDCKLMVE GSGLLLDTIK BACU010687/1-724 NPTLTLEVLD QAQVQKPVTV KVLFSNPLDE LVTDCKLMVE GSGLLLDSLK 701 750 ENSP00000370867/1-693 IDVPTLGPKE GSRVRFDILP SRSGTKQLLA DFSCNKFPAI KAMLSIDVAE ENSBTAP00000006432/1-691 IDVPALRPKE RSRVRFEILP TRSGTKQLLA NFSCNKFPAI KAMLSVDVAE ENSTTRP00000010156/1-694 IDMPNLSPRE QSQVDFEILP TRSGTKQLLV NLSCNKFSAI KGMLPIKVVD bmy_17140T0/1-735 IDMPTLQPRE QSHVNFEILP TRSGTKQLLT SFSCNKFPVI KGMLSIKVNE BACU010687/1-724 IDMPTLNPRQ QSYVDFEILP TRSGTKQLLA NFSCNKFPAI KGMLSIKVNK