KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:30 2014 Check: 00 .. Name: ENSTTRP00000012862/1-846 Len: 889 Check: 9309 Weight: 1.00 Name: ENSP00000277895/1-778 Len: 889 Check: 5541 Weight: 1.00 Name: bmy_03057T0/1-415 Len: 889 Check: 2745 Weight: 1.00 Name: BACU004673/1-362 Len: 889 Check: 5464 Weight: 1.00 Name: ENSBTAP00000006447/1-790 Len: 889 Check: 7860 Weight: 1.00 // 1 50 ENSTTRP00000012862/1-846 MPCFLGLKSL GKLFNSVKSK VTSSEKTSTR GSYRRILVVE DVYAPGSPYP ENSP00000277895/1-778 MPAFLGLKCL GKLCSSEKSK VTSSERTSAR GSNRKRLIVE DRRVSGTSFT bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012862/1-846 AHRRATITHL LCLHPEVYCM FEHLLNNLDL LVAHPQDPHH PSEKPVIHCH ENSP00000277895/1-778 AHRRATITHL LYLCPKDYCP RGRVCNSVDP FVAHPQDPHH PSEKPVIHCH bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 ---------- ---------- ------MVKE KVAHPQDPHH PSEKPVIHCH ENSBTAP00000006447/1-790 ---------- ---------- ------MVKE KVAHPQDPHH PSEKPVIHCH 101 150 ENSTTRP00000012862/1-846 KCGEPCKGEV LRVQTKHFHI RCFTCKVCGC DLAQGGFFIK NGEYLCTLDY ENSP00000277895/1-778 KCGEPCKGEV LRVQTKHFHI KCFTCKVCGC DLAQGGFFIK NGEYLCTLDY bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 KCGEPCKGEV LRVQTKHFHI KCFTCKVCGC DLAQGGFFIK NGEYLCTLDY ENSBTAP00000006447/1-790 KCGEPCKGEV LRVQTKHFHI KCFTCKVCGC DLAQGGFFIK NGEYLCTLDY 151 200 ENSTTRP00000012862/1-846 QRMYGTRCHG CGEFVEGEVV TALGKTYHPN CFACTICKRP FPPGDRVTFN ENSP00000277895/1-778 QRMYGTRCHG CGEFVEGEVV TALGKTYHPN CFACTICKRP FPPGDRVTFN bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 QRMYGTRCHG CGDFVEGEVV TALGKTYHPN CFACTICKRP FPPGDRVTFN ENSBTAP00000006447/1-790 QRMYGTRCHG CGEFVEGEVV TALGKTYHPN CFACTICKRP FPPGDRVTFN 201 250 ENSTTRP00000012862/1-846 GRDCLCQLCA QPMSSSPKEA SCSGNCAGCG RDIKNGQALL ALEKQWHLGC ENSP00000277895/1-778 GRDCLCQLCA QPMSSSPKET TFSSNCAGCG RDIKNGQALL ALDKQWHLGC bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 GRDCLCQLCA QPMSSSPKEA SCSGNCAGCG RDIKNGQALL ALEKQWHLGC ENSBTAP00000006447/1-790 GRDCLCQLCA QPMSSSPKEA SCSGNCAGCG RDIKNGQALL ALEKQWHLGC 251 300 ENSTTRP00000012862/1-846 FKCKSCGKVL TGEYISKDGA PYCEKDYQGL FGVKCEACHQ FITGKVLEAG ENSP00000277895/1-778 FKCKSCGKVL TGEYISKDGA PYCEKDYQGL FGVKCEACHQ FITGKVLEAG bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 FKCKSCGKVL TGEYISKDGA PYCEKDYQGL FGVKCEACHQ FITGKVLEAG ENSBTAP00000006447/1-790 FKCKSCGKVL TGEYISKDGA PYCEKDYQGL FGVKCEACHQ FITGKVLEAG 301 350 ENSTTRP00000012862/1-846 DKHYHPSCAR CSRCNQMFTE GEEMYLQGST VWHPDCKQST KTEEKLRPRN ENSP00000277895/1-778 DKHYHPSCAR CSRCNQMFTE GEEMYLQGST VWHPDCKQST KTEEKLR--- bmy_03057T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU004673/1-362 DKHYHPSCAR CSRCNQMFTE GEEMYLQGST VWHPDCKQST KTEEKLR--- ENSBTAP00000006447/1-790 DKHYHPSCAR CSRCNQMFTE GEEMYLQGST VWHPDCKQST KTEEKLRPPN 351 400 ENSTTRP00000012862/1-846 IRRSPSDFFY PKSLIRRTGW SPSLQ----- ---------- -XXXXXXXXX ENSP00000277895/1-778 ---------- ---------- ---------- ---------- -PTRTSSESI bmy_03057T0/1-415 ---------- ---------- ---------- ---------- -PTRTSSESI BACU004673/1-362 ---------- ---------- ---------- ---------- -PTRTSSESI ENSBTAP00000006447/1-790 IRRSPSDFFY PKSLIRRTGR SPCLQLLSPP CLVNFDKNPR QPTRTSSESI 401 450 ENSTTRP00000012862/1-846 XXXXGSSIPR SPGHTIYAKV DNEILDYKDL AAIPKVKAIY DIERPDLITY ENSP00000277895/1-778 YSRPGSSIPG SPGHTIYAKV DNEILDYKDL AAIPKVKAIY DIERPDLITY bmy_03057T0/1-415 YSRPGSSIPG SPGHTIYAKV DNEILDYKDL AAIPKVKAIY DIERPDLITY BACU004673/1-362 YSRAGSSIPG SPGHTIYAKV DNEILDYKDL AAIPKVKAIY DIERPDLITY ENSBTAP00000006447/1-790 YSRPGSSIPG SPGHTIYAKV DNEILDYKDL AAIPKVKAIY DIERPDLITY 451 500 ENSTTRP00000012862/1-846 EPFYSSGYDD KQERQSLGES PRTLSPTPSA EGYQDGRDRM IHRSTSQGSI ENSP00000277895/1-778 EPFYTSGYDD KQERQSLGES PRTLSPTPSA EGYQDVRDRM IHRSTSQGSI bmy_03057T0/1-415 EPFYSSGYDD KQERQSLG-- ---------- EGYQDGRDRM IHRSTSQGSI BACU004673/1-362 EPFYSSGYDD RQERQSLGES PRTLSPTPSA EK-------- ---------- ENSBTAP00000006447/1-790 EPFYSSGYDD KQERQSLGES PRTLSPTPSA EGYQDGRDRM IHRSTSQGSI 501 550 ENSTTRP00000012862/1-846 NSPVYSRHSY TPTTSRSPQH FHRPELLSPG VQRSFLHTGS LSSGHSDSRP ENSP00000277895/1-778 NSPVYSRHSY TPTTSRSPQH FHRP------ ---------- ---------- bmy_03057T0/1-415 NSPVYSRHSY TPTTSRSPQH FHRPELLSPG VQRSFLHTGS LSSGHSDSRP BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 NSPVYSRHSY TPTTSRSPQH FHRPELLSPG VQRSFLRTSS LSSAHSDSRP 551 600 ENSTTRP00000012862/1-846 NSPFRHHFLP HIKGNEPSSG RNSPLPYRPD SRPVTPTYAQ APKHFHVPDQ ENSP00000277895/1-778 ---------- ---GNEPSSG RNSPLPYRPD SRPLTPTYAQ APKHFHVPDQ bmy_03057T0/1-415 NSPFRHHFLP HIKGNEPSSG RNSPLPYRPD SRPVTPTYAQ APKHFHVPDQ BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 NSPFRHHFLP HVKGNEPSSG RNSPLPYRPD SRPLTPTYAQ APKHFHVPDQ 601 650 ENSTTRP00000012862/1-846 GINIYRKPPI YKQH--AALA AQSKSSEDII KFSKFPAAQA PDPSEIPKIE ENSP00000277895/1-778 GINIYRKPPI YKQH--AALA AQSKSSEDII KFSKFPAAQA PDPSETPKIE bmy_03057T0/1-415 GINIYRKPPI YKQHDAAALA AQSKSSEDII KFSKFPAAQA PDPSEIPKIE BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 GINIYRKPPI YKQHDAAALA AQSKSSEDII KFSKFPAAQA PDPSEIPKIE 651 700 ENSTTRP00000012862/1-846 TDH-PGPPSL AAI---GA-- -DMRRRSSGR EEDDEELLRR RQLQEEQLMK ENSP00000277895/1-778 TDHWPGPPSF AVV---GP-- -DMKRRSSGR EEDDEELLRR RQLQEEQLMK bmy_03057T0/1-415 TDHWPGPPSL AAIAQLGPGP VDTERRDGEG EGEPGEL--- ---------- BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 TDHWPGPPSL AAV-ELGA-- -DTRRRSSGR EEEDEELLRR RQLQEEQLMK 701 750 ENSTTRP00000012862/1-846 LNSGLGQLIL KEEMEKERES RERSSLATGR YDSSINSASH ALSSKTSSLP ENSP00000277895/1-778 LNSGLGQLIL KEEMEKE--S RERSSLLASR YDSPINSASH IPSSKTASLP bmy_03057T0/1-415 ---------- ---------- ---------- ---------H MLYHRKPHLS BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 LNSGLGQLIL KEEMEKERES RERASLAASR YDSPINSASH VLSSKTASLP 751 800 ENSTTRP00000012862/1-846 -GYGKNGLHR PVSTDFAQYS SYGDVSGGVR GSQTLPDGHM PGMRMDRGVS ENSP00000277895/1-778 -GYGRNGLHR PVSTDFAQYN SYGDVSGGVR DYQTLPDGHM PAMRMDRGVS bmy_03057T0/1-415 QAMGKTGFTG LFLQTLLSTT AMGMSAG--- ECETLPDGHM PGMRMDRGVS BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 -GYGRNGLHR GATGQYGQRP RAGGEHGS-R GHQTLPDGHM PGMRMDRGVS 801 850 ENSTTRP00000012862/1-846 MPNMLEPKIF PYEMLMVTNR GRSKILRDVD RTRLE----- ---------- ENSP00000277895/1-778 MPNMLEPKIF PYEMLMVTNR GRNKILREVD RTRLE----- ---------- bmy_03057T0/1-415 MPNI------ ---------- GRSKILRDVD RTRLEVIHVA VRTDHCSLLP BACU004673/1-362 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006447/1-790 MPNMLEPKIF PYEMLMVTNR GRNKILRDVD RTRLE----- ---------- 851 900 ENSTTRP00000012862/1-846 --RHLAPEVF REIFGMSIQD FDKLPLWRRN DMKKKAKLF ENSP00000277895/1-778 --RHLAPEVF REIFGMSIQE FDRLPLWRRN DMKKKAKLF bmy_03057T0/1-415 SQRHLAPEVF REIFGMSIQE FDKLPLWRRN DMKKKAKLF BACU004673/1-362 ---------- ---------- ---------- --------- ENSBTAP00000006447/1-790 --RHLAPEVF REIFGMSIQE FDKLPLWRRN DMKKKAKLF