KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:33 2014 Check: 00 .. Name: ENSBTAP00000006458/1-1234 Len: 1411 Check: 947 Weight: 1.00 Name: bmy_17707T0/1-922 Len: 1411 Check: 7228 Weight: 1.00 Name: ENSP00000314363/1-1239 Len: 1411 Check: 1302 Weight: 1.00 Name: ENSTTRP00000016040/1-1265 Len: 1411 Check: 2375 Weight: 1.00 // 1 50 ENSBTAP00000006458/1-1234 ---------- ---------- ---------- ---------- ---------- bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 MANDSPAKSL VDIDLSSLRD PAGIFELVEV VGNGTYGQVY KGRHVKTGQL ENSTTRP00000016040/1-1265 ---------- ---------D PAGIFELVEV VGNGTYGQVY KGRHVKTGQL 51 100 ENSBTAP00000006458/1-1234 ---------- ---------- ---------- ---------- ---------- bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 AAIKVMDVTE DEEEEIKLEI NMLKKYSHHR NIATYYGAFI KKSPPGHDDQ ENSTTRP00000016040/1-1265 AAIKVMDVTE DEEEEIKLEI NMLKKYSHHR NIATYYGAFI KKSPPGHDDQ 101 150 ENSBTAP00000006458/1-1234 LQLVMEFCGA GSITDLVKNT KGNTLKEDWI AYISREILRG LAHLHIHHVI bmy_17707T0/1-922 ---------- -MLSD----- ---------- ---------- ---------- ENSP00000314363/1-1239 LWLVMEFCGA GSITDLVKNT KGNTLKEDWI AYISREILRG LAHLHIHHVI ENSTTRP00000016040/1-1265 LWLVMEFCGA GSITDLVKNT KGNTLKEDWI AYISREILRG LAHLHIHHVI 151 200 ENSBTAP00000006458/1-1234 HRDIKGQNVL LTENAEVKLV DFGVSAQLDR TVGRRNTFIG TPYWMAPEVI bmy_17707T0/1-922 ---------- -------KLS DFPTVSRDEA GAGPRT---- ---------- ENSP00000314363/1-1239 HRDIKGQNVL LTENAEVKLV DFGVSAQLDR TVGRRNTFIG TPYWMAPEVI ENSTTRP00000016040/1-1265 HRDIKGQNVL LTENAEVKLV DFGVSAQLDR TVGRRNTFIG TPYWMAPEVI 201 250 ENSBTAP00000006458/1-1234 ACDENPDATY DYRSDLWSCG ITAIEMAEGA PPLCDMHPMR ALFLIPRNPP bmy_17707T0/1-922 ---ECP---- ---------- ---------- ---------- --------SP ENSP00000314363/1-1239 ACDENPDATY DYRSDLWSCG ITAIEMAEGA PPLCDMHPMR ALFLIPRNPP ENSTTRP00000016040/1-1265 ACDENPDATY DYRSDLWS-G ITAIEMAEGA PPLCDMHPMR ALFLIPRNPP 251 300 ENSBTAP00000006458/1-1234 PRLKSKKWSK KFFSFIEGCL VKNYMQRPST EQLLKHPFIR DQPNERQVRI bmy_17707T0/1-922 PK-------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 PRLKSKKWSK KFFSFIEGCL VKNYMQRPST EQLLKHPFIR DQPNERQVRI ENSTTRP00000016040/1-1265 PRLKSKKWSK KFFSFIEGCL VKNYMQRPST EQLLKHPFIR DQPNERQVRI 301 350 ENSBTAP00000006458/1-1234 QLKDHIDRTR KKRGEKDETE YEYSGSEEEE EEAPEQEGEP SSIVNVPGES bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 QLKDHIDRTR KKRGEKDETE YEYSGSEEEE EEVPEQEGEP SSIVNVPGES ENSTTRP00000016040/1-1265 QLKDHIDRTR KKRGEKDETE YEYSGSEEEE EEAPEQEGEP SSIVNVPGES 351 400 ENSBTAP00000006458/1-1234 TLRRDFLRLQ QENKERSEAL RRQQLLQEQQ LREQEEYKRQ LLAERQKRIE bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 TLRRDFLRLQ QENKERSEAL RRQQLLQEQQ LREQEEYKRQ LLAERQKRIE ENSTTRP00000016040/1-1265 TLRRDFLRLQ QENKERSEAL RRQQLLQEQQ LREQEEYKRQ LLAERQKRIE 401 450 ENSBTAP00000006458/1-1234 QQKEQRRRLE EQQRREREAR RQQEREQRRR EQEEKRRLEE LERRRKEEEE bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ---------- ENSP00000314363/1-1239 QQKEQRRRLE EQQRREREAR RQQEREQRRR EQEEKRRLEE LERRRKEEEE ENSTTRP00000016040/1-1265 QQKEQRRRLE EQQRREREAR RQQEREQRRR EQEEKRRLEE LERRRQEEEE 451 500 ENSBTAP00000006458/1-1234 RRRAEEEKR- ---------- ---------- ---------- ----ECRWRE bmy_17707T0/1-922 ---------- ---------- ---------- ---------- ----ECRWRE ENSP00000314363/1-1239 RRRAEEEKRR VEREQEYIRR QLEEEQRHLE VLQQQLLQEQ AMLLECRWRE ENSTTRP00000016040/1-1265 RRRAEEDKRR VDREQEYIRR QLEEEQRHLE LLQQQLLQEQ AMLLECRWRE 501 550 ENSBTAP00000006458/1-1234 LEEHRQAERL QRQLQQEQAY LLSLQHDPRR P-------PP PP--DRSKAG bmy_17707T0/1-922 LEEHRQTERL QRQLQQEQAY LLSLQHEPRR P--------P PP--DRSKAG ENSP00000314363/1-1239 MEEHRQAERL QRQLQQEQAY LLSLQHDHRR PHPQHSQQPP PPQQERSKPS ENSTTRP00000016040/1-1265 LEEQRQTERL QRQLQQEQAY LLSLQHEPRR P-------PP PP--DRSKAG 551 600 ENSBTAP00000006458/1-1234 LH--EPKAPH EPADRAREVE DRFRKTNHSS PEAQSKQTGR VLEPPVPSRS bmy_17707T0/1-922 LHGAEPKAQH EPADRAREVE DRFRKTNHSS PEAQSKQTGR VLEPPVPSRS ENSP00000314363/1-1239 FHAPEPKAHY EPADRAREVE DRFRKTNHSS PEAQSKQTGR VLEPPVPSRS ENSTTRP00000016040/1-1265 LHGAEPKAQH EPADRAREVE DRFRKTNHSS PEAQSKQTGR VLEPPVPSRS 601 650 ENSBTAP00000006458/1-1234 ESFSSGNSES VHPALQRPAE PQKEKTKVQW SHLASLKNNV SPVSRSHSFS bmy_17707T0/1-922 ESFSNGNSES VHPALQRPAE PQ-----VQW SHLASLKNSV SPVSRSHSFS ENSP00000314363/1-1239 ESFSNGNSES VHPALQRPAE PQ-------- ---------- ---------- ENSTTRP00000016040/1-1265 ESFSNGNSES VHPALQRPAE PQ-----VQW SHLASLKNSV SPVSRSHSFS 651 700 ENSBTAP00000006458/1-1234 DPSPPKFAHH HLRSQDPCPP SRSEVLSQSS DSKAEVPDPA QKAWSRSDSD bmy_17707T0/1-922 DPSPPKFAHH HLRSQDPCPP SRSEVLSQSS DSKAEVPDPA QKAWSRSDSD ENSP00000314363/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016040/1-1265 DPSPPKFAHH HLRSQDPCPP SRSEVLSQSS DSKSEVPDPA QKAWSRSDSD 701 750 ENSBTAP00000006458/1-1234 EVPPRPKVPV RTTSRSPVLS RRDSPLQGSG QQSNQAGQRN ST---RKPVL bmy_17707T0/1-922 EVPPR--VPV RTTSRSPVLS RRDSPLQGSG QQNSQAGQRN STSSIEPRLL ENSP00000314363/1-1239 -------VPV RTTSRSPVLS RRDSPLQGSG QQNSQAGQRN ST-SIEPRLL ENSTTRP00000016040/1-1265 EVPPR--VPV RTTSRSPVLS RRDSPLQGSG QQNSQAGQRN STSSIEPRLL 751 800 ENSBTAP00000006458/1-1234 WCVHGRGMPQ PMGCHASSPD HRKRTQFLTA AGTGNRSQSG SGERFRVR-- bmy_17707T0/1-922 WERVEKLVPR P-GSGSSSGS SNSGSQ---- PGSHPGSQSG SGERFRVRYV ENSP00000314363/1-1239 WERVEKLVPR P-GSGSSSGS SNSGSQ---- PGSHPGSQSG SGERFRVR-- ENSTTRP00000016040/1-1265 WERVEKLVPR P-GSGSSSGS SNSGSQ---- PGSHPGSQSG SGERFRVR-- 801 850 ENSBTAP00000006458/1-1234 -------SLN LTASSKSEGS PSQRLENAAK KPEDKKEVFR PLKPA---DL bmy_17707T0/1-922 YVTRPFLSLN FTASSKSEGS PSQRLENAAK KPEDKKEVFR PLKPA---DL ENSP00000314363/1-1239 ---------- --SSSKSEGS PSQRLENAVK KPEDKKEVFR PLKPA---DL ENSTTRP00000016040/1-1265 ---------- --SSSKSEGS PSQRLENAAK KPEDKKEVFR PLKPAVRIDL 851 900 ENSBTAP00000006458/1-1234 TALAKELRAV EDVRPPHKVT DYSSSSEESG TTDEEDDDVE QEGAEEPTSG bmy_17707T0/1-922 TALARELRAA EDVRPPHKVT DYSSSSEESG TTDEEDDDVE QEGPEEPTSG ENSP00000314363/1-1239 TALAKELRAV EDVRPPHKVT DYSSSSEESG TTDEEDDDVE QEGADESTSG ENSTTRP00000016040/1-1265 TALARELRAA EDVRPPHKVT DYSSSSEESG TTDEEDDDVE QEGPEEPTSG 901 950 ENSBTAP00000006458/1-1234 PEDTRAASSL NLSNGETESV KTMVVHDDVE SEPALTPSKE GTLIVRQSAV bmy_17707T0/1-922 PEDARAASSL NLSNGETESV KTMIVHDDVE SEPAMTPSKE GTLIVRQSAI ENSP00000314363/1-1239 PEDTRAASSL NLSNGETESV KTMIVHDDVE SEPAMTPSKE GTLIVRQ--- ENSTTRP00000016040/1-1265 PEDARAASSL NLSNGETESV KTMIVHDDVE SEPAMTPSKE GTLIVRQ--- 951 1000 ENSBTAP00000006458/1-1234 DQKRASHHES NGFAGRIHLL PDLLQQSHSS STSSTSSSPS SSQPT----- bmy_17707T0/1-922 DQKRASHHES NGFAGRIHLL PDLLQQSHSS STSSTSSSPS SSQPTPTMSP ENSP00000314363/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016040/1-1265 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000006458/1-1234 ---------- -TQSASNTLQ KHKSSSSFTP FIDPRLLQIS PSSGTTVTSV bmy_17707T0/1-922 QTPQDKLTTN ETQSASSTLQ KHKSSSSFTP FIDPRLLQIS PSSGTTVTSV ENSP00000314363/1-1239 ---------- -TQSASSTLQ KHKSSSSFTP FIDPRLLQIS PSSGTTVTSV ENSTTRP00000016040/1-1265 ---------- -TQSASSTLQ KHKSSSSFTP FIDPRLLQIS PSSGTTVTSV 1051 1100 ENSBTAP00000006458/1-1234 VGFSCDGMRP EAMRQDPTRK GSVVNVNPTN TRPQSDTPEI RKYKKRFNSE bmy_17707T0/1-922 VGFSCDGMRS EAIRQDPTRK GSVVNVNPTN TRPQSDTPEI RKYKKRFNSE ENSP00000314363/1-1239 VGFSCDGMRP EAIRQDPTRK GSVVNVNPTN TRPQSDTPEI RKYKKRFNSE ENSTTRP00000016040/1-1265 VGFSCDGMRS EAIRQDPTRK GSVVNVNPTN TRPQSDTPEI RKYKKRFNSE 1101 1150 ENSBTAP00000006458/1-1234 ILCAALWGVN LLVGTESGLM LLDRSGQGKV YPLINRRRFQ QMDVLEGLNV bmy_17707T0/1-922 ILCAALWGVN LLVGTESGLM LLDRSGQGKV YPLINRRRFQ QMDVLEGLNV ENSP00000314363/1-1239 ILCAALWGVN LLVGTESGLM LLDRSGQGKV YPLINRRRFQ QMDVLEGLNV ENSTTRP00000016040/1-1265 ILCAALWGVN LLVGTESGLM LLDRSGQGKV YPLINRRRFQ QMDVLEGLNV 1151 1200 ENSBTAP00000006458/1-1234 LVTISGKKDK LRVYYLSWLR NKILHNDPEV EKKQGWTTVG DLEGCVHYKV bmy_17707T0/1-922 LVTISGKKDK LRVYYLSWLR NKILHNDPEV EKKQGWTTVG DLEGCVHYKV ENSP00000314363/1-1239 LVTISGKKDK LRVYYLSWLR NKILHNDPEV EKKQGWTTVG DLEGCVHYKV ENSTTRP00000016040/1-1265 LVTISGKKDK LRVYYLSWLR NKILHNDPEV EKKQGWTTVG DLEGCVHYKV 1201 1250 ENSBTAP00000006458/1-1234 VKYERIKFLV IALKNSVEVY AWAPKPYHKF MAFKSFGELV HKPLLVDLTV bmy_17707T0/1-922 VKYERIKFLV IALKSSVEVY AWAPKPYHKF MAFKSFGDLV HKPLLVDLTV ENSP00000314363/1-1239 VKYERIKFLV IALKSSVEVY AWAPKPYHKF MAFKSFGELV HKPLLVDLTV ENSTTRP00000016040/1-1265 VKYERIKFLV IALKSSVEVY AWAPKPYHKF MAFKSFGDLV HKPLLVDLTV 1251 1300 ENSBTAP00000006458/1-1234 EEGQRLKVIY GSCAGFHAVD VDSGSVYDIY LPTHIQCSIK PHAIIILPNT bmy_17707T0/1-922 EEGQRLKVIY GSCAGFHAVD VDSGSVYDIY LPTHIQCSIK PHAIIILPNT ENSP00000314363/1-1239 EEGQRLKVIY GSCAGFHAVD VDSGSVYDIY LPTHIQCSIK PHAIIILPNT ENSTTRP00000016040/1-1265 EEGQRLKVIY GSCAGFHAVD VDSGSVYDIY LPTHIQCSIK PHAIIILPNT 1301 1350 ENSBTAP00000006458/1-1234 DGMELLVCYE DEGVYVNTYG RITKDVVLQW GEMPTSVAYI RSNQTMGWGE bmy_17707T0/1-922 DGMELLVCYE DEGVYVNTYG RITKDVVLQW GEMPTSVAYI RSNQTMGWGE ENSP00000314363/1-1239 DGMELLVCYE DEGVYVNTYG RITKDVVLQW GEMPTSVAYI RSNQTMGWGE ENSTTRP00000016040/1-1265 DGMELLVCYE DEGVYVNTYG RITKDVVLQW GEMPTSVAYI RSNQTMGWGE 1351 1400 ENSBTAP00000006458/1-1234 KAIEIRSVET GHLDGVFMHK RAQRLKFLCE RNDKVFFASV RSGGSSQVYF bmy_17707T0/1-922 KAIEIRSVET GHLDGVFMHK RAQRLKFLCE RNDKVFFASV RSGGSSQVYF ENSP00000314363/1-1239 KAIEIRSVET GHLDGVFMHK RAQRLKFLCE RNDKVFFASV RSGGSSQVYF ENSTTRP00000016040/1-1265 KAIEIRSVET GHLDGVFMHK RAQRLKFLCE RNDK------ ---------- 1401 1450 ENSBTAP00000006458/1-1234 MTLGRTSLLS W bmy_17707T0/1-922 MTLGRTSLLS W ENSP00000314363/1-1239 MTLGRTSLLS W ENSTTRP00000016040/1-1265 ---------- -