KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:33 2014 Check: 00 .. Name: ENSP00000329380/1-652 Len: 693 Check: 1046 Weight: 1.00 Name: ENSBTAP00000006460/1-650 Len: 693 Check: 4511 Weight: 1.00 Name: ENSTTRP00000001216/1-556 Len: 693 Check: 5709 Weight: 1.00 Name: bmy_08644T0/1-584 Len: 693 Check: 1676 Weight: 1.00 Name: BACU001287/1-600 Len: 693 Check: 3324 Weight: 1.00 // 1 50 ENSP00000329380/1-652 MPLLLLLLLL PSPLHPHPIC EVSKVASHLE VNCDKRNLTA LPPDLPKDTT ENSBTAP00000006460/1-650 MPLLLLLLLL PSPSHPVPIC EVGNKDSQVE VNCENKGLKA PPPDLPADTA ENSTTRP00000001216/1-556 MPLFLLLLLL PSPSHSHPIC GISKVASEVE MNCENKGLKA PPPDLQAETN bmy_08644T0/1-584 MPLFLLLLLL PSPSHSHPIC GISKVVSEVE MNCENKGLKA PPPDLQAETN BACU001287/1-600 MPLFLLLLLL PSPSHSHPIC GISKVVSEVE MNCENKGLKA PPPDLQAETN 51 100 ENSP00000329380/1-652 ILHLSENLLY TFSLATLMPY TRLTQLNLDR CELTKLQVDG TLPVLGTLDL ENSBTAP00000006460/1-650 ILHLGENPLG TFSMASVLNL SQLTELFLGK SQLTSLQADA KLPRLEVLNL ENSTTRP00000001216/1-556 ILRLGGNPLG TFSTVSMVSL THLTQLHLEK SQLTSLQTDA TLPRLETLII bmy_08644T0/1-584 ILRLGGNPLG TFSMVSMVNL THLTQLHLEK SQLTSLQTDA TLPRLETLII BACU001287/1-600 ILRLGGNPLG TFSMVSMVNL THLTQLHLEK SQLTSLQTDA TLPRLETLII 101 150 ENSP00000329380/1-652 SHNQLQSLPL LGQTLPALTV LDVSFNRLTS LPLGALRGLG ELQELYLKGN ENSBTAP00000006460/1-650 AHNKLRSLPK LGRALPVLSI LDVSFNELTS LPSDTLHGLS RLQELYLRGN ENSTTRP00000001216/1-556 SHNTLRSLPL LGRALPALYT L-VSFNELAS ---DALNGLS HLHELYLRGN bmy_08644T0/1-584 SHNTLRSLPL LGRALPALYT LDVSFNELAS LSPDALDGLS HLHELYLRGN BACU001287/1-600 SHNTLRSLPS LGRALPALYT LDVSFNELAS LSPDALDGLS HLHELYLRGN 151 200 ENSP00000329380/1-652 ELKTLPPGLL TPTPKLEKLS LANNNLTELP AGLLNGLENL DTLLLQENSL ENSBTAP00000006460/1-650 QLRTLPPELL VPTPHLKKLS LAENDLQELP PELLKGLEEL DTLYLQKNRL ENSTTRP00000001216/1-556 KLKTLPPGLQ -PTPKLKKLN LAENGLSELP PGFLDGLEEL DTLYLQRNLL bmy_08644T0/1-584 KLKTLPPRLL QPTPKLKKLN LAENGLSELP PGFLDGLEEL DTLYLQRNLL BACU001287/1-600 KLKTLPPRLL QPTPKLKKLN LAENGLSELP PGFLDGLEEL DTLYLQRNLL 201 250 ENSP00000329380/1-652 YTIPKGFFGS HLLPFAFLHG NPWLCNCEIL YFRRWLQDNA ENVYVWKQGV ENSBTAP00000006460/1-650 RTIPTDFFGM LLLPYAFFHN NSWSCDCGIL YFSRWLQDNP SNVYVWEEDV ENSTTRP00000001216/1-556 RTIPKGFFGD LLLPFAFFHD NTWFCDCGIL YFSHWLQDNA NNVYIWKEGV bmy_08644T0/1-584 RTIPKGFFGD LLLPFSFFHD NTWFCDCGIL YFSRWLQDNA NNVYIWKEGV BACU001287/1-600 RTIPKGFFGD LLLPFSFFHD NTWFCDCGIL YFSRWLQDNA NNVYIWKEGV 251 300 ENSP00000329380/1-652 DVKAMTSNVA SVQCDNSDKF PVYKYPGKGC PTLGDEGDTD LYDYYPEEDT ENSBTAP00000006460/1-650 DIKAMTPDVK SVRCVNMNGM YVYNFLGDSC NIPGDRDNLD -YDEYEDKDE ENSTTRP00000001216/1-556 DAKAMTPNVT SVGCVNLPNT FVYTYSGEGC HTPGDRDSID -YDVYEEDD- bmy_08644T0/1-584 DAKAMTPNVT SVGCVNLPNT FVYTYSGEGC HTPGDRDSID -YDVYEEDD- BACU001287/1-600 DAKAMTPNVT SVGCVNLPNT FVYTYSGEGC HTPGDRDSID -YDVYEEDD- 301 350 ENSP00000329380/1-652 EGDKVRATRT VVKFPTK--A HTTPWGLFY- SWSTASLDSQ MPSSLHPTQE ENSBTAP00000006460/1-650 Q--EVSVVNT VSSLSS---- HTTHWDLLYL TSPTSP-GSQ V-SSLPP--- ENSTTRP00000001216/1-556 ---KVPTTRA AGSFSTHTSA HTTHWGLLY- SLPTAPLGPQ V-SSLPP--- bmy_08644T0/1-584 ---EVPTTRA AGSFSTHTSA HTTHWGLLY- SVPTAPLGPQ V-SSLPP--- BACU001287/1-600 ---EVPTTRA AGSFSTHTSA HTTHWGLLY- SVPTAPLGPQ V-SSLPP--- 351 400 ENSP00000329380/1-652 STKEQTTFPP RWTPNFTLHM ESITFSKTPK STTEPTPSPT TSEPVPEPAP ENSBTAP00000006460/1-650 -VKKLTTTP- -------ITI DSITSSKTLN PTTEPPTTPT TPESTTPTTP ENSTTRP00000001216/1-556 -TKEQTTPN- --------FT GPITFSKTLK P--------- ---------- bmy_08644T0/1-584 -TKEQTTFR- -------IST GPITFSKTLK P--------- ---------- BACU001287/1-600 -TKEQTRFR- -------IST GPITFSKTLK P--------- ---------- 401 450 ENSP00000329380/1-652 NMT------- ---------- ---------- --------TL EPTPSPTTPE ENSBTAP00000006460/1-650 EPTIPTTPEP TTPTTPEPTT PTTPEPTTPT TPEPTTPTTP EPTT-PTTPE ENSTTRP00000001216/1-556 ---------- ---------- ---------- --------TP EPTS-PSTPE bmy_08644T0/1-584 ---------- ---------- ---------- --------TP EPTA-PSTPE BACU001287/1-600 ---------- ---------- ---------- --------TP EPTT-PSTPE 451 500 ENSP00000329380/1-652 PTSEPAPSPT TPEPTSEPAP SPTTPEPTSE PAPSPTTPEP TPIPTIATSP ENSBTAP00000006460/1-650 PTTPTTPEPT T--PTTPEPT TPTTPEPTTP TTPEPTTPT- TLEPTTPTTP ENSTTRP00000001216/1-556 PTSPSTPEEQ ---------- ---------- ----PSRAT- SREPT----- bmy_08644T0/1-584 PTAPSTPEPT A--P------ ---------- STPEPTAPS- TSDPTALSTS BACU001287/1-600 PTAPSTPEPT A--PSTPEPT AQSTPEPTAQ STPEPTAQS- TPEPTALSTS 501 550 ENSP00000329380/1-652 TILVSATSLI TPKSTFLTTT KPVSL---LE STKKTIPELD QPPKLRGVLQ ENSBTAP00000006460/1-650 ----EPISET LQPTIFLTST ESISLPTILE STITIISESD NPWKVQGLA- ENSTTRP00000001216/1-556 ---------- -----FLTST EPTSLPTILE STTATISEFV NLLKAQGVAQ bmy_08644T0/1-584 ----EPTSET SEPTISLTST EPTSLPTILE STTATISEFV NLLKAQGVAQ BACU001287/1-600 ----EPTSET SEPTISLTST EPTSLPTILE STTATISEFV NLLKAQGVAQ 551 600 ENSP00000329380/1-652 GHLESSRNDP FLHPDFCCLL PLGFYVLGLF WLLFASVVLI LLLSWVGHVK ENSBTAP00000006460/1-650 ----SSSNNP VLSSDSCCLF -LGFYILGLL WLLVASVILI LLLCWVQQVK ENSTTRP00000001216/1-556 WNVESSRNDP FLNSDFCCLF -LGFYILGLL WLLFASVVLI LLLFWVQHVK bmy_08644T0/1-584 WNAESSRNDP ILNSDFCCLF -LGFYILGLL WLLFASVVLI LLLFWVQHVK BACU001287/1-600 WNVESSRNDP ILNSDFCCLF -LGFYILGLL WLLFASVVLI LLLFWVQHVK 601 650 ENSP00000329380/1-652 PQALDSGQGA ALTTATQTTH LELQRGRQVT VPRAWLLFLR GSLPTFRSSL ENSBTAP00000006460/1-650 PW-------- ALATATHTAH LELQRGRQVM VHRAWLLFFQ GLLPTFRSSL ENSTTRP00000001216/1-556 PQ-------- ALATVTHTSH LELQRGRQVT VARACLLFLQ GSLPTFRSSL bmy_08644T0/1-584 PQ-------- ALATVTHTSH LELQRGRQVT VARAWLLFLR GSLPTFRSSL BACU001287/1-600 PQ-------- ALATVTHTSH LELQRGRQVT VARAWLLFLQ GSLPTFRSSL 651 700 ENSP00000329380/1-652 FLWVRPNGRV GPLVAGRRPS ALSQGRGQDL LSTVSIRYSG HSL ENSBTAP00000006460/1-650 FLWVRPNGRM GPLQAGRRPS ALSLGRGGDL LGTVGVRYSG HSL ENSTTRP00000001216/1-556 FLWVRPNGRV GPLLAGRRPS ALSMGRGQDL LGTVAVRYSG HSL bmy_08644T0/1-584 FLWVRPNGRV GPLLAGRRPS ALSMGRGQDL MGTVGVRYSG HSL BACU001287/1-600 FLWVRPNGRV GPLLAGRLPA ALSMGRGQDL LGTVGVRYSG HSL