KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:34 2014 Check: 00 .. Name: bmy_08642T0/1-292 Len: 392 Check: 2055 Weight: 1.00 Name: ENSP00000262482/1-350 Len: 392 Check: 8141 Weight: 1.00 Name: ENSBTAP00000006464/1-295 Len: 392 Check: 7732 Weight: 1.00 Name: BACU001289/1-349 Len: 392 Check: 7155 Weight: 1.00 Name: ENSTTRP00000001218/1-294 Len: 392 Check: 5996 Weight: 1.00 // 1 50 bmy_08642T0/1-292 MHPAAFPLPV VVATVLWGAA PTRGLIRA-- ---------- ---------- ENSP00000262482/1-350 MHPAAFPLPV VVAAVLWGAA PTRGLIRATS DHNASMDFAD LPALFGATLS ENSBTAP00000006464/1-295 ---------- ---------- ---------- ---------- ---------- BACU001289/1-349 MHPAAFPLPV VVATVLWGAA PTRGLIRAIS DHNASMDFAD LPALFGAALS ENSTTRP00000001218/1-294 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_08642T0/1-292 -----GFLVE AHPDNACSPI APPPPAPVNG SVFIALLRRF DCNFDLKVAE ENSP00000262482/1-350 QEGLQGFLVE AHPDNACSPI APPPPAPVNG SVFIALLRRF DCNFDLK--- ENSBTAP00000006464/1-295 ----QGFLVE AHPDNACSPI APPPPAPVNG SVFIALLRRF DCNFDLK--- BACU001289/1-349 QEGLQGFLVE AHPDNACSPI APPPPAPVNG SVFIALLRRF DCNFDLK--- ENSTTRP00000001218/1-294 -----GFLVE AHPDNACSPI APPPPAPVNG SVFIALLRRF DCNFDLK--- 101 150 bmy_08642T0/1-292 CGVGAGRLRV LNAQRAGYGA AVVHNVNSNE LLNMVWNSGG MGQERQMPGL ENSP00000262482/1-350 ---------V LNAQKAGYGA AVVHNVNSNE LLNMVWNS-- ---------- ENSBTAP00000006464/1-295 ---------V LNAQKAGYGA AVVHNVNSNE LLNMVWNS-- ---------- BACU001289/1-349 ---------V LNAQRAGYGA AVVHNVNSNE LLNMVWNS-- ---------- ENSTTRP00000001218/1-294 ---------V LNAQKAGYGA AVVHNVNSNE LLNMVWNS-- ---------- 151 200 bmy_08642T0/1-292 PKDSYGRLGP KCNALIPAEE IQQQIWIPSV FIGERSSEYL RALFVYEKGA ENSP00000262482/1-350 ---------- --------EE IQQQIWIPSV FIGERSSEYL RALFVYEKGA ENSBTAP00000006464/1-295 ---------- --------EE IQQQIWIPSV FIGERSSEYL RALFVYEKGA BACU001289/1-349 ---------- --------EE IQQQIWIPSV FIGERSSEYL RALFVYEKGA ENSTTRP00000001218/1-294 ---------- --------EE IQQQIWIPSV FIGERSSEYL RALFVYEKGA 201 250 bmy_08642T0/1-292 RVLLVPDNSF PLGYYLIPFT GIVGLLVLAM GAVMIVRCIQ HRKRLQRNRL ENSP00000262482/1-350 RVLLVPDNTF PLGYYLIPFT GIVGLLVLAM GAVMIARCIQ HRKRLQRNRL ENSBTAP00000006464/1-295 RVLLVPDNSF PLGYYLIPFT GIVGLLVLAM GAVMIVRCIQ HRKRLQRNRL BACU001289/1-349 RVLLVPDNSF PLGYYLIPFT GIVGLLVLAM GAVMIVRCIQ HRKRLQRNRL ENSTTRP00000001218/1-294 RVLLVPDNSF PLGYYLIPFT GIVGLLVLAM GAVMIVRCIQ HRKRLQRNRL 251 300 bmy_08642T0/1-292 TKEQLKQIPT HDYQKG---- ---------E EGGGEQAFPT I-SLVLKELE ENSP00000262482/1-350 TKEQLKQIPT HDYQKGDQYD VCAICLDEYE DGDKLRVLPC AHAYHSRCVD ENSBTAP00000006464/1-295 TKEQLKQIPT HDYQKGDQYD VCAICLDEYE DGDKLRVLPC AHAYHSRCVD BACU001289/1-349 TKEQLKQIPT HDYQKGDQYD VCAICLDEYE DGDKLRVLPC AHAYHIRCVD ENSTTRP00000001218/1-294 TKEQLKQIPT HDYQKGDQYD VCAICLDEYE DGDKLRVLPC AHAYHIRCVD 301 350 bmy_08642T0/1-292 P--------- ---------- ---RRKEAEM AGR------- ---------- ENSP00000262482/1-350 PWLTQTRKTC PICKQPVHRG PGDEDQEEET QGQEEGDEGE PRDHPASERT ENSBTAP00000006464/1-295 PWLTQTRKTC PICKQPVHRG PGDDEQEEES QGQEGDEEGE PRDQPASERT BACU001289/1-349 PWLTQTRKTC PICKQPVHRG PGDEEQEEET QGQEGDEEGE PRDHPASERT ENSTTRP00000001218/1-294 PWLTQTRKTC PICKQPVHRG PGDEEQEEET QGQEGDEEGE PRDHPASERT 351 400 bmy_08642T0/1-292 ----CQLEMP -------PFL LFLRIHTMRT GQD------- -- ENSP00000262482/1-350 PLLGSSPTLP TSFGSLAPAP LVFPGPSTDP PLSPPSSPVI LV ENSBTAP00000006464/1-295 PLLGSSPTPP SSFGSIAPAP LVFPGSSTDP SPS-TSSAAI LV BACU001289/1-349 PLLGSTPTPP TSFGSLAPAP LALPGSSTDP SPS-TSAAAI LV ENSTTRP00000001218/1-294 PLLGCTPTPP TSFGSLAPAP LVLPGSSTDP SPS-TSAAAI LV