KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:34 2014 Check: 00 .. Name: ENSTTRP00000001710/1-419 Len: 484 Check: 4546 Weight: 1.00 Name: ENSBTAP00000006468/1-417 Len: 484 Check: 2317 Weight: 1.00 Name: bmy_21751T0/1-300 Len: 484 Check: 5607 Weight: 1.00 Name: BACU011245/1-429 Len: 484 Check: 852 Weight: 1.00 // 1 50 ENSTTRP00000001710/1-419 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006468/1-417 ---------- ---------- ---------- ---------- ---------- bmy_21751T0/1-300 LARRDVAGSG WRWGGWPALV LGEVRGAADP GQDPGPDPGL TRPDPARRIE BACU011245/1-429 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001710/1-419 -----MASPR TRKVLKEIRV QDENNVCFEC GAFNPQWVSV TYGIWICLEC ENSBTAP00000006468/1-417 -----MASPR TRKVLKEVRA QDENNVCFEC GAFNPQWVSV TYGIWICLEC bmy_21751T0/1-300 PSARAMASPR TRKVLKEVRV QDENN----C GAFNPQWVSV TYGIWICLEC BACU011245/1-429 -----MASPR TRKVLKEVRV QDENNVCFEC GAFNPQWVSV TYGIWICLEC 101 150 ENSTTRP00000001710/1-419 SGKHRGLGVH LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000006468/1-417 SGKHRGLGVH LSFVRSVTMD KWKDVELEKM KAGGNARFRE FLESQEDYDP bmy_21751T0/1-300 SGKHRGLGVH LSFVRSVTMD KWKDAELEKM KAGGNAKFRE FLECQEDYDP BACU011245/1-429 SGKHRGLGVH LSFVRSVTMD KWKDAELEKM KAGGNAKFRE FLECQEDYDP 151 200 ENSTTRP00000001710/1-419 XXXXXXXXXX XXXXXXXXXV ATLAEGREWS LESSPAQNWT PPQPKTLRSS ENSBTAP00000006468/1-417 CWSLQEKYSS RAAALFRDRV AALAEGKEWS LESSPAQSWT PPQPRTLLSS bmy_21751T0/1-300 CWSLQEKYSS KAAALFRDKV AALAEGREWS LESSPAQNWT PPQPKTLPSS BACU011245/1-429 CWSLQEKYSS KAAALFRDKV AALAEGRGWS PESSPAQSWT PPRPRTLPSS 201 250 ENSTTRP00000001710/1-419 AHRASGQLQN STPSADKAFE DWLNDDLGSY QGAQENRYVG FGNTVPPPKR ENSBTAP00000006468/1-417 AHRASGQVQN STASGDKAFE DWLNDDLGSY QGAQENRYVG FGNTVPPPKR bmy_21751T0/1-300 AHRASGQLRN STTCADKAFE DWLNDDLGSY QGAQENRYVG FGNTVPPPKR BACU011245/1-429 AHRASGQLRN STTSADKAFE DWLNDDLGSY QGAQENRYVG FGNTVPPPKR 251 300 ENSTTRP00000001710/1-419 EDDFLNSAMS SLYSGWSSFA TGASRFASAA KEGATKFGSQ ASQKFWGSKQ ENSBTAP00000006468/1-417 EDDFLNSAMS SLYSGWSSFA TGASRFASAA KEGATKFGSQ ASQK------ bmy_21751T0/1-300 EDDFLNSAVS SLYSGWSSFA TGASRFASAA KEGVSSLSCH AAAQ------ BACU011245/1-429 EDDFLNSAMS SLYSGWSSFA TGASRFASAA KEGATKFGSQ ASQKFWGSKQ 301 350 ENSTTRP00000001710/1-419 QPELASELGH SLNESVLKPA QEKVKEGKIF DDVSSGFSEL AAK--GVGSR ENSBTAP00000006468/1-417 ----ASELGH SLNESVLKPA QEKVKEGKIF DDVSSGFSEL ASKVQGVGSR bmy_21751T0/1-300 ---------- ---------- ---------- ---------- ---------A BACU011245/1-429 QPELASELGH GLNEGVLKPA QEKVKEGKIF DDVSSGFSEL AAKVQGVGSR 351 400 ENSTTRP00000001710/1-419 GWRDVTTFFS GRAEDPLD-S PEGRSCQNSG GDSSQGTTDR NFWEAFGSTD ENSBTAP00000006468/1-417 GWRDVTTFFS GRAEDSSDRP PEGPSYQNSG GDNSQNTLDQ SFWESFGSTD bmy_21751T0/1-300 RWL------- ---------- ---------- ---------- --WETMGS-- BACU011245/1-429 GWRDVTTFFS GRAEDPLDRA PEGRSCQNSG GDSSHGATDR NFWETFGSTD 401 450 ENSTTRP00000001710/1-419 PAGAHRSPGS NSWTCADPSA DKRSSDGWDA WGSDPASAPS N-GGGDVGGR ENSBTAP00000006468/1-417 PARAHRSPSS DSWTCADASA DKRSSDSWDV WGSGSASASN NRISDNSDGG bmy_21751T0/1-300 ---------- ---------- ---------- ---------- ---------- BACU011245/1-429 PARAHRSPSG NSWTCADPSA DKRSSDGWDA WGPGPASASS NRDSDDMGGG 451 500 ENSTTRP00000001710/1-419 EAWGAGVEG- -----IKEAA PPAAVDDGWD NQDW ENSBTAP00000006468/1-417 EAWGGDGEG- -RAKVAKKAT PPPTVDDGWD NQDW bmy_21751T0/1-300 ---------- ---------- ---------- ---- BACU011245/1-429 EAWGRGAEGR TRARAVKEAA PPAAVDDGWD NQDW