KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:34 2014 Check: 00 .. Name: ENSP00000285518/1-364 Len: 365 Check: 5713 Weight: 1.00 Name: ENSBTAP00000006476/1-292 Len: 365 Check: 4754 Weight: 1.00 Name: ENSTTRP00000016190/1-292 Len: 365 Check: 6701 Weight: 1.00 Name: bmy_19434T0/1-165 Len: 365 Check: 4041 Weight: 1.00 Name: BACU013303/1-170 Len: 365 Check: 6109 Weight: 1.00 // 1 50 ENSP00000285518/1-364 MLLSLVLHTY SMRYLLPSVV LLGTAPTYVL AWGVWRLLSA FLPARFYQAL ENSBTAP00000006476/1-292 MLLSLVLHMH SVRCVLPAAV LLGTAPTYVL VWGAWRLLSA LLPSRFYQAV ENSTTRP00000016190/1-292 ---------- ---------- ---------- ---------- ---------- bmy_19434T0/1-165 MLLSLVLHMY SMCCVLPAAV LLGTAPTYVL AWGAWRLLSA FLPSRFYQAV BACU013303/1-170 MLLSLVLHMY SMCCVLPAAV LLGTAPTYVL AWGAWRLLSA FLPSRFYQAV 51 100 ENSP00000285518/1-364 DDRLYCVYQS MVLFFFENYT GVQILLYGDL PKNKENIIYL ANHQSTVDWI ENSBTAP00000006476/1-292 DDRLYCVYQS MVLFFFENYT GVQILLYGDL PKNKENIIYL ANHQSTVDWI ENSTTRP00000016190/1-292 ---------- ---------- ---ILLYGDL PKNKENIIYL ANHQSTVDWI bmy_19434T0/1-165 DDRLYCIYQS MVLFFFENYT GVQILLYGDL PKNKENIIYL ANHQSTVDWI BACU013303/1-170 DDRLYCIYQS MVLFFFENYT GVQILLYGDL PKNKENIIYL ANHQSTVDWI 101 150 ENSP00000285518/1-364 VADILAIRQN ALGHVRYVLK EGLKWLPLYG CYFAQHGGIY VKRSAKFNEK ENSBTAP00000006476/1-292 IADILAVRQS ALGHVRYVLK DGLKWLPLYG CYFSQHGGIY VKRSAKFNEN ENSTTRP00000016190/1-292 VADMLAIRQN ALGHVRYVLK DGLKWLPLYG CYFSQHGGIY VKRSAKFNEK bmy_19434T0/1-165 VADILAIRQN ALGHVRYVLK DGLKWLPLYG CYFYQHGGIY VKRSAKFNEK BACU013303/1-170 VADILAIRQN ALGHVRYVLK DGLKWLPLYG CYFYQHGGIY VKRSAKFNEK 151 200 ENSP00000285518/1-364 EMRNKLQSYV DAGTPMYLVI FPEGTRYNPE QTKVLSASQA FAAQRGLAVL ENSBTAP00000006476/1-292 QMRKKLQRYI NAGTPMYLVI FPEGTRYNPE LTKVISASQA FAAQEGLPVL ENSTTRP00000016190/1-292 EMRKKLQSYI NAGAPMYLVI FPEGTRYNPE LTKVISASQT FAAQEGLPVL bmy_19434T0/1-165 EMRKKLQSYI NAGTP----- ---------- ---------- ---------- BACU013303/1-170 EMRKKLQSYI NAGTPTVNVK ---------- ---------- ---------- 201 250 ENSP00000285518/1-364 KHVLTPRIKA THVAFDCMKN YLDAIYDVTV VYEGK-DDGG QRRESPTMTE ENSBTAP00000006476/1-292 KHVLTPRIKA THVAFDSMKD YLDAVYDVTV AFEGSVDDKG QRKEAPSMAE ENSTTRP00000016190/1-292 KHVLTPRIKA THVAFDSMKN YLDAIYDVTV AFEGTVDDKG QRKEAPSMAE bmy_19434T0/1-165 ---------- ---------- ---------- ---------- ---------- BACU013303/1-170 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000285518/1-364 FLCKECPKIH IHIDRIDKKD VPEEQEHMRR WLHERFEIKD KMLIEFYESP ENSBTAP00000006476/1-292 FLCKECPKIH IHIDRIDKKN IPEEQVSMKR WLHERFEIKD KP-------- ENSTTRP00000016190/1-292 FLCKECPKIH IHIDRIDKKD VPEEQVYMKR WLHERFEIKD KLLIEFYDSL bmy_19434T0/1-165 ---------- ---------- ---------- ---------- ---------- BACU013303/1-170 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000285518/1-364 DPERRKRFPG KSVNSKLSIK KTLPSMLILS GLTAGMLMTD AGRKLYVNTW ENSBTAP00000006476/1-292 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016190/1-292 DPERRNKFPG ESVNSKLSLK KTLPSFLILS GLTAGMLMTE AGRKLYVKTW bmy_19434T0/1-165 ---------- ---------- ---------- ---------- ---------- BACU013303/1-170 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000285518/1-364 IYGTLLGCLW VTIKA ENSBTAP00000006476/1-292 ---------- ----- ENSTTRP00000016190/1-292 VYGTLIGCLW VSIKA bmy_19434T0/1-165 ---------- ----- BACU013303/1-170 ---------- -----