KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:35 2014 Check: 00 .. Name: ENSP00000216367/1-527 Len: 560 Check: 1969 Weight: 1.00 Name: ENSBTAP00000006488/1-527 Len: 560 Check: 1903 Weight: 1.00 Name: bmy_06160T0/1-544 Len: 560 Check: 7132 Weight: 1.00 Name: BACU015318/1-467 Len: 560 Check: 9695 Weight: 1.00 Name: ENSTTRP00000007250/1-527 Len: 560 Check: 2521 Weight: 1.00 // 1 50 ENSP00000216367/1-527 MAPERLRSRA LSAFKLRGLL LRG------- ----EAIKYL TEALQSISEL ENSBTAP00000006488/1-527 MAPERLRSRA LSAFKLRGLM LRG------- ----EAVKYL TEALQSINEI bmy_06160T0/1-544 MAPERLRSRV LSAFKLRGLL LRGTLKQTEF INVSEAIKYL TEALQSINEV BACU015318/1-467 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007250/1-527 MAPERLRSRA LSAFKLRGLL LRG------- ----EAIKYL TEALQSINEV 51 100 ENSP00000216367/1-527 ELEDKLEKII NAVEKQPLSS NMIERSVVEA AVQECSQSVD ETIEHVFNII ENSBTAP00000006488/1-527 ELEDALEKII DAVEKQPLSS NMIERSVVEA AVQECSQSVD ETIDHIFNII bmy_06160T0/1-544 ELEDALEKII DAVEKQPLSS NMIERSVVEA AVQECSQSVD ETVEHIFNII BACU015318/1-467 ---------- ---------- -MIERSVVEA AVQECSQSVD ETVEHIFNII ENSTTRP00000007250/1-527 ELEDALEKII DAVEKQPLSS NMIERSVVEA AVQECSQSVD EAVEHIFNII 101 150 ENSP00000216367/1-527 GAFDIPRFVY NSERKKFLPL LMTNHPAPNL FGTPRDKAEM FRERYTILHQ ENSBTAP00000006488/1-527 GAFDIPRFVY NSERKKFLPL LMTNHPAPNL FGTARDKAEL FRERYTILHQ bmy_06160T0/1-544 GAFDMPRLVY NSERKKFLPL LMTNHPTPNL FGTARDKAEL FRERYTILHQ BACU015318/1-467 GAFDIPRLVY NSERKKFLPL LMTNHPAPNL FGTARDKAEL FRERYTILHQ ENSTTRP00000007250/1-527 GAFDIPRLVY NSERKKFLPL FMTNHPAPNL FGTARDKAEL FRERYTILHQ 151 200 ENSP00000216367/1-527 RTHRHELFTP PVIGSHPDES GSKFQLKTIE TLLGSTTKIG DAIVLGMITQ ENSBTAP00000006488/1-527 RTHRHELFTP PVIGSHPDES GSKFQLKTIE TLLGSTSKIG DVIVLGMITQ bmy_06160T0/1-544 RTHRHELFTP PVIGSHPDES GSKFQLKTVE TLLGSTTKIG DVIILGMITQ BACU015318/1-467 RTHRHELFTP PVIGSHPDES GSKFQLKTVE TLLGSTTKIG DVIILGMITQ ENSTTRP00000007250/1-527 RTHRHELFTP PVIGSHPDES GSKFQLKTVE TLLGSTTKIG DVIILGMITQ 201 250 ENSP00000216367/1-527 LKEGKFFLED PTGTVQLDLS KA-------- ---------- ----QFHSGL ENSBTAP00000006488/1-527 LKEGKFFLED PTGTIQLDLS KA-------- ---------- ----QFHSGL bmy_06160T0/1-544 LKEGKFFLED PTGTVQLDLS KAISFTFIFL NLIEVELFSS IIVYQFHSGL BACU015318/1-467 LKEGKFFLED PTGTVQLDLS KA-------- ---------- ----QFHSGL ENSTTRP00000007250/1-527 LKEGKFFLED PTGTVQLDLI KA-------- ---------- ----QFHSGL 251 300 ENSP00000216367/1-527 YTEACFVLAE GWFEDQVFHV NAFGFPPTEP SSTTRAYYGN INFFGGPSNT ENSBTAP00000006488/1-527 YTESCFVLAE GWFEDQVFHV NAFGFPPTEP SSTTRAYYGN TNFFGGPSNT bmy_06160T0/1-544 YTESCFVLAE GWFEDQVFHV NAFGFPPTEP SSTTRAYYGN INFFGGPSNT BACU015318/1-467 YTESCFVLAE GWFEDQVFHV NAFGFPPTEP SSTTRAYYGN INFFGGPSNT ENSTTRP00000007250/1-527 YTESCFVLAE GWFEDQVFHV NAFGFPPTEP SSTTRAYYGN INFFGGPSNT 301 350 ENSP00000216367/1-527 SVKTSAKLKQ LEEENKDAMF VFLSDVWLDQ VEVLEKLRIM FAGYSPAPPT ENSBTAP00000006488/1-527 SVKTSAKLKQ LEDENKDAMF VFISDVWLDQ VEVLEKLHIM FSGYSPAPPT bmy_06160T0/1-544 SVKTSAKLKQ LEDENKDAMF VFISDVWLDQ VEVLEKLHTM FSGYSPAPPT BACU015318/1-467 SVKTSAKLKQ LEDENKDAMF VFISDVWLDQ VEILEKLHTM FSGYSPAPPT ENSTTRP00000007250/1-527 SVKTSAKLKQ LEDENKDAMF VFISDVWLDQ VEVLEKLHTM FSGYSPAPPT 351 400 ENSP00000216367/1-527 CFILCGNFSS APYGKNQVQA LKDSLKTLAD IICEYPDIHQ SSRFVFVPGP ENSBTAP00000006488/1-527 CFILCGNFSS APYGKNQVQA LKDSLKTLAD IICEYPNIHQ SSRFVFVPGP bmy_06160T0/1-544 CFILCGNFSS VPYGKNHVQA LKDSLKTLAD IICEYPNIHQ SSRFVFVPGP BACU015318/1-467 CFILFGNFSS VPYGKNHVQA LKDSLKTLAD IICEYPNIHQ SSRFVFVPGP ENSTTRP00000007250/1-527 CFILCGNFSS VPYGKNQVQA LKDSLKTLAD IICEYPNIHQ SSRFVFVPGP 401 450 ENSP00000216367/1-527 EDPGFGSILP RPPLAESITN EFRQRVPFSV FTTNPCRIQY CTQEITVFRE ENSBTAP00000006488/1-527 EDPGFGSILP RPPFAESITN EFRQRVPFSV FTTNPCRIQY CTQEIIVFRE bmy_06160T0/1-544 EDPGFGSILP RPPFAESITN EFRQRVPFSV FTTNPCRIQY CTQEIIVFRE BACU015318/1-467 EDPGFGSILP RPPFAESITN EFRQRVPFSV FTTNPCRIQY CTQEIIVFRE ENSTTRP00000007250/1-527 ADPGFGSILP RPPFAESITN EFRQRVPFSV FTTNPCRIQY CTQEIIVFRE 451 500 ENSP00000216367/1-527 DLVNKMCRNC VRFPSSNLAI PNHFVKTILS QGHLTPLPLY VCPVYWAYDY ENSBTAP00000006488/1-527 DLVNKMCRNC VRFPSSNLDI PNHFVKTVLS QGHLTPLPLY VCPVYWAYDY bmy_06160T0/1-544 DLVNKMCRNC VRFPSSNLDI PNHFVKTILS QGHLTPLPLY VCPVYWAYDY BACU015318/1-467 DLVNKMCRNC VRFPSSNLDI PNHFVKTILS QGHLTPLPLY VCPVYWAYDY ENSTTRP00000007250/1-527 DLVNKMCRNC VRFPSSNLDI PNHFVKTILS QGHLTPLPLY VCPVYWAYDY 501 550 ENSP00000216367/1-527 ALRVYPVPDL LVIADKYDPF TTTNTECLCI NPGSFPRSGF SFKVFYPSNK ENSBTAP00000006488/1-527 ALRVYPVPDL LVIADKYDPF TLTNTECLCI NPGSFPRSGF SFKVFYPSNK bmy_06160T0/1-544 ALRVYPVPDL LVIADKYDPF TLTNTECLCI NP-------- NLEIASESSS BACU015318/1-467 ALRVYPVPDL LVIADKYDPF TLTNTECLCI NPGSFPRSGF SFKVFYPSSK ENSTTRP00000007250/1-527 ALRVYPVPDL LVIADKYDPF TLTNTECLCI NPGSFPRSGF SFKVFYPSSK 551 600 ENSP00000216367/1-527 TVEDSKLQGF ENSBTAP00000006488/1-527 VVEDSKLQGF bmy_06160T0/1-544 F--------F BACU015318/1-467 IVEDSKLQGF ENSTTRP00000007250/1-527 IVEDSKLQGF