KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:36 2014 Check: 00 .. Name: ENSTTRP00000007274/1-1074 Len: 1092 Check: 6454 Weight: 1.00 Name: bmy_06163T0/1-846 Len: 1092 Check: 1669 Weight: 1.00 Name: ENSP00000298310/1-1076 Len: 1092 Check: 8087 Weight: 1.00 Name: BACU015321/1-1016 Len: 1092 Check: 8377 Weight: 1.00 Name: ENSBTAP00000006491/1-1079 Len: 1092 Check: 3443 Weight: 1.00 // 1 50 ENSTTRP00000007274/1-1074 -----MKTRF ST-----VDL RAVLAEL--N ARLLGMRVNN VYDVDNKTYL bmy_06163T0/1-846 MTRLVVKEKW KNFPCYRIQR KEAVFQISRN SCLLGMRVNN VYDVDNKTYL ENSP00000298310/1-1076 -----MKSRF ST-----IDL RAVLAEL--N ASLLGMRVNN VYDVDNKTYL BACU015321/1-1016 -----MKTRF ST-----VDL RAVLAEL--N ARLLGMRVNN VYDVDNKTYL ENSBTAP00000006491/1-1079 -----MKTRF ST-----VDL RAVLAEL--N ASLLGMRVNN VYDVDNKTYL 51 100 ENSTTRP00000007274/1-1074 IRLQKPDVKA TLLLESGIRI HTTEFEWPKN MMPSSFAMKC RKHLKSRRLV bmy_06163T0/1-846 IRLQKPDFKA TLLLESGIRI HTTEFEWPKN MMPSSFAMKC RKHLKSRRLV ENSP00000298310/1-1076 IRLQKPDFKA TLLLESGIRI HTTEFEWPKN MMPSSFAMKC RKHLKSRRLV BACU015321/1-1016 IRLQKPDFKA TLLLESGIRI HTTEFEWPKN MMPSSFAMKC RKHLKSRRLV ENSBTAP00000006491/1-1079 IRLQKPDFKA TLLLESGIRI HTTEFEWPKN MMPSSFAMKC RKHLKSRRLV 101 150 ENSTTRP00000007274/1-1074 SAKQLGVDRI VDFQFGSDEA AYHLIIELYD RXXXXXXXXX XXXXXXXXXX bmy_06163T0/1-846 SAKQLGVDRI VDFQFGSDEA AYHLIIELYD RGNIVLTDYE YLILNILRFR ENSP00000298310/1-1076 SAKQLGVDRI VDFQFGSDEA AYHLIIELYD RGNIVLTDYE YVILNILRFR BACU015321/1-1016 SAKQLGVDRI VDFQFGSDEA AYHLIIELYD RGNIVLTDYE YLILNILRFR ENSBTAP00000006491/1-1079 SAKQLGVDRI VDFQFGSDEA AYHLIIELYD RGNIVLTDYE YLILNILRFR 151 200 ENSTTRP00000007274/1-1074 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLTEIIASAP KGELLKRVLN bmy_06163T0/1-846 TDESDDVKFA VREHYPVDHA RAAEPFLTLE RLTEIIASAP KGELLKRVLN ENSP00000298310/1-1076 TDEADDVKFA VRERYPLDHA RAAEPLLTLE RLTEIVASAP KGELLKRVLN BACU015321/1-1016 TDESDDVKFA VREHYPIDHA RAAEPLLTLE RLTEIIASAP KGELLKRVLN ENSBTAP00000006491/1-1079 TDESDDVKFA VRERYPIDHA RAAEPLLTLE RLTEILAGAP KGELLKRVLN 201 250 ENSTTRP00000007274/1-1074 PLLPCGPALI EHCLIESGFS GNVKLDEKFE SKDIEKVLVC LQKAEEYMKT bmy_06163T0/1-846 PLLPCGPALI EHCLIENGFS GNVKVDEKFE SKDIEKVLVC LQKAEEYMKT ENSP00000298310/1-1076 PLLPYGPALI EHCLLENGFS GNVKVDEKLE TKDIEKVLVS LQKAEDYMKT BACU015321/1-1016 PLLPCGPALI EHCLIENGFS GNVKVDEKFE SKDIEKVLVC LQKAEEYMKT ENSBTAP00000006491/1-1079 PLLPYGPALI EHCLIENGFP ANVKVDEKFE SKDVEKVLVC LQKAEEYMKT 251 300 ENSTTRP00000007274/1-1074 TSNFSGKGYI IQKREIKPSL EVDKPTEDIF TYEEFHPFLF SQHSQCPYIE bmy_06163T0/1-846 TSNFSG---- ---------- ---------- ---------- ---------- ENSP00000298310/1-1076 TSNFSGKGYI IQKREIKPSL EADKPVEDIL TYEEFHPFLF SQHSQCPYIE BACU015321/1-1016 TSNLSGKGYI IQKREIKPSL EVDKPTEDIL TYEEFHPFLF SQYSQCPYIE ENSBTAP00000006491/1-1079 TSSFNGKGYI IQKREIKPSL EVDKPTEDIL TYEEFHPFLF SQHSQCPYIE 301 350 ENSTTRP00000007274/1-1074 FESFDKAVDE FYSKIEGQKI DLKALQQ--E KQALKKLDNV RKDHENRLEA bmy_06163T0/1-846 -----KAVDE FYSKIEGQKI DLKALQQ--E KQALKKLDNV RKDHENRLEA ENSP00000298310/1-1076 FESFDKAVDE FYSKIEGQKI DLKALQQ--E KQALKKLDNV RKDHENRLEA BACU015321/1-1016 FESFDKAVDE FYSKIEGQKI DLKALQQ--E KQALKKLDNV RKDHENRLEA ENSBTAP00000006491/1-1079 FESFDKAVDE FYSKIEGQKI DLKALQQQKE KQALKKLDNV RKDHENRLEA 351 400 ENSTTRP00000007274/1-1074 LQQAQEIDKL KGELIEMNLQ IVDRAIQVVR SALANQIDWT EIGLIVKEAQ bmy_06163T0/1-846 LQQAQEIDKL KGELIEMNLQ IVDRAIQVVR SALANQIDWT EIGLIVKEAQ ENSP00000298310/1-1076 LQQAQEIDKL KGELIEMNLQ IVDRAIQVVR SALANQIDWT EIGLIVKEAQ BACU015321/1-1016 LQQAQEIDKL KGELIEMNLQ IVDRAIQVVR SALANQIDWT EIGLIVKEAQ ENSBTAP00000006491/1-1079 LQQAQEIDKL KGELIEMNLQ IVDRAIQVVR SALANQIDWT EIGLIVKEAQ 401 450 ENSTTRP00000007274/1-1074 AQGDPVANAI KELKLQTNHV TMLLRNPYLL SEEEDDDVDG DVSTEKNETE bmy_06163T0/1-846 AQGDPVANAI KELKLQTNHV TMLLRNPYLL SEEEDDDVDG ---------- ENSP00000298310/1-1076 AQGDPVASAI KELKLQTNHV TMLLRNPYLL SEEEDDDVDG DVNVEKNETE BACU015321/1-1016 AQGDPVANAI KELKLQTNHV TMLLRNPYLL SEEEDDDVDG DISTEKNETE ENSBTAP00000006491/1-1079 AQGDPVANAI KELKLQTNHV TMLLRNPYLL SEEEDDDVDG DISTEKNEPE 451 500 ENSTTRP00000007274/1-1074 PPKGKKKKQK NKQLQKPQKN RPLLVDVDLS LSAYANAKKY YDHKRYAAKK bmy_06163T0/1-846 ---------- ---------- --IMITRDML L--------- ---------- ENSP00000298310/1-1076 PPKGKKKKQK NKQLQKPQKN KPLLVDVDLS LSAYANAKKY YDHKRYAAKK BACU015321/1-1016 PPKGKKKKQK NKQLQKPQKN RPLLIDVDLS LSAYANAKKY YDHKRYAAKK ENSBTAP00000006491/1-1079 PPKGKKKKQK NKQLQKPQKN RPLLVDVDLS LSAYANAKKY YDHKRYAAKK 501 550 ENSTTRP00000007274/1-1074 TQKTVEAAEK AFKSAEKKTK QTLKEVQTVT SIQKARKIYW FEKFLWFISS bmy_06163T0/1-846 ---------- ------RKHR RLLKLLRR-- ---------- FEKFLWFISS ENSP00000298310/1-1076 TQKTVEAAEK AFKSAEKKTK QTLKEVQTVT SIQKARKVYW FEKFLWFISS BACU015321/1-1016 TQKTVEAAEK AFKSAEKKTK QTLKEVQTVT SIQKARKVYW FEKFLWFISS ENSBTAP00000006491/1-1079 TQKTVEAAEK AFKSAEKKTK QTLKEVQTVT SIQKARKVYW FEKFLWFISS 551 600 ENSTTRP00000007274/1-1074 ENYLIIGGRD QQQNEIIVKR YLTPGDIYVH ADLHGATSCV IKNPTGEPIP bmy_06163T0/1-846 ENYLIIGGRD QQQNEIIVKR YLTP------ ---------- ---------- ENSP00000298310/1-1076 ENYLIIGGRD QQQNEIIVKR YLTPGDIYVH ADLHGATSCV IKNPTGEPIP BACU015321/1-1016 ENYLIIGGRD QQQNEIIVKR YLTPGDIYVH ADLHGATSCV IKNPTGEPVP ENSBTAP00000006491/1-1079 ENYLIIGGRD QQQNEIIVKR YLTPGDIYVH ADLHGATSCV IKNPTGEPIP 601 650 ENSTTRP00000007274/1-1074 PRTLTEAGTM ALCYSAAWDA RVITSAWWVY HHQVSKTAPT GEYLTTGSFM bmy_06163T0/1-846 -----DKSIM YYCVP----- ---------- --QVSKTAPT GEYLTTGSFM ENSP00000298310/1-1076 PRTLTEAGTM ALCYSAAWDA RVITSAWWVY HHQVSKTAPT GEYLTTGSFM BACU015321/1-1016 PRTLTEAGTM ALCYSAAWDA RVITSAWWVY HHQVSKTAPT GEYLTTGSFM ENSBTAP00000006491/1-1079 PRTLTEAGTM ALCYSAAWDA RVITSAWWVY HHQVSKTAPT GEYLTTGSFM 651 700 ENSTTRP00000007274/1-1074 IRGKKNFLPP SHLMMGFSFL F-VDESCIWR HRGERKVXXX XXXXXXXXXX bmy_06163T0/1-846 IRGKKNFLPP SHLMMGFSFL FKVDESCIWR HRGERKVRVQ DEDMETLAIC ENSP00000298310/1-1076 IRGKKNFLPP SYLMMGFSFL FKVDESCVWR HQGERKVRVQ DEDMETLASC BACU015321/1-1016 IR-------- ---------- ---------- ---------- ---------- ENSBTAP00000006491/1-1079 IRGKKNFLPP SHLMMGFSFL FKVDESCVWR HRGERKVKVQ DEDMETLASC 701 750 ENSTTRP00000007274/1-1074 XXXXXXXXXX XX-XGGDSSS EEDKEELHET PVEVELVTQV DQGDITIQSG bmy_06163T0/1-846 TNELISEEME QL-DGGDSSS EEDKEELHGA PVEVELVTQV DQGDITVQSG ENSP00000298310/1-1076 TSELISEEME QL-DGGDTSS DEDKEE-HET PVEVELMTQV DQEDITLQSG BACU015321/1-1016 ---------- ---DGGDSSS EEDKEELHET PAEVELVTQV DQGDITIQSG ENSBTAP00000006491/1-1079 TSELISKEME QLADGGESSS EEDKDELHET PVEVELVTQV DQEDVTIQSG 751 800 ENSTTRP00000007274/1-1074 GDELN-ELIQ EESSEDEGES EEVVKHQEPV GEMKDEGEET LHYPDTSIDL bmy_06163T0/1-846 GDELN-ELIQ EESSEDEGES EEVVKHQEPV GEMQDEGEET LHYPDTSIDL ENSP00000298310/1-1076 RDELNEELIQ EESSEDEGEY EEVRKDQDSV GEMKDEGEET LNYPDTTIDL BACU015321/1-1016 GDELN-ELIQ EESSEDEGES EEVVKHQEPV GEMKDEGEET LHYPDTSIDL ENSBTAP00000006491/1-1079 GNELN-ELIQ EESSEDEGES EGVVKDQEPV GEMKDEGEET LNYPDTSIDL 801 850 ENSTTRP00000007274/1-1074 SHLQSQRSLQ KLASKEESSN MSDSKLQSRR HLSAKERREM KKKKLPSDSG bmy_06163T0/1-846 SHLQSQRSLQ KLASKEESSN MSDSKLQSRR HLSAKERREM KKKKLPSDSG ENSP00000298310/1-1076 SHLQPQRSIQ KLASKEESSN SSDSKSQSRR HLSAKERREM KKKKLPSDSG BACU015321/1-1016 SHLQSQRSLQ KLASKEESSN MSDSKLQSRR HLSAKERREM KKKKLPSDSG ENSBTAP00000006491/1-1079 SHLQSQRSLQ KLSSKEESSN MSDSKLQSRR HLSAKERREM KKKKLPNDSG 851 900 ENSTTRP00000007274/1-1074 DLEMIEGKDK EKENALHIET PQNTSRNVPA VQPMKRGQKS K-KKMKEKYN bmy_06163T0/1-846 DLEMIEGKDK EKENALHIET HQNTSKNVPA VQPMKRGQKS KMKKMKEKYK ENSP00000298310/1-1076 DLEALEGKDK EKESTVHIET HQNTSKNVAA VQPMKRGQKS KMKKMKEKYK BACU015321/1-1016 DLEMIEGKDK EKENVLHIET HQNTSKNVPA VQPMKRGQKS KMKKMKEKYK ENSBTAP00000006491/1-1079 DLEMTEAKDK EKENALHIET HQNTSKNVPV VQPMKRGQKS KMKKMKEKYK 901 950 ENSTTRP00000007274/1-1074 DQDEEERELI MKLLGSAGSN KEEKGKKGKK GKIKDEPVKK QPQKPKGGPR bmy_06163T0/1-846 DQDEEERELI MKLLG----- ---------- ---------- ---------- ENSP00000298310/1-1076 DQDEEDRELI MKLLGSAGSN KEEKGKKGKK GKTKDEPVKK QPQKPRGGQR BACU015321/1-1016 DQDEEERELI MKLLGSAGSN KEEKGKKGKK GKIKDEPVKK QPQKPKGVPR ENSBTAP00000006491/1-1079 DQDEEERELI MKLLGSAGSN KEEKGKKGKK GKIKDEPVKK QPQKPRGGPR 951 1000 ENSTTRP00000007274/1-1074 VSDSIKKETP SLEVTTHELQ DLAVDDPHDD KEEQDLDQQG NEENLFDSLT bmy_06163T0/1-846 ---------- ---------- ---------- -EEQDLDQQG NEENLFDSLT ENSP00000298310/1-1076 VSDNIKKETP FLEVITHELQ DFAVDDPHDD KEEQDLDQQG NEENLFDSLT BACU015321/1-1016 VSDSIKKETP SLEVTTHELQ DLAVDDPHDD KEEQDLDQQG NEETLFDSLT ENSBTAP00000006491/1-1079 VSDSIKKETP SLEITTHELQ DLAVDEPHDD KEEQDVDQQG NEENLFDSLT 1001 1050 ENSTTRP00000007274/1-1074 GQPHPEDVLL FAIPICAPYN TMTNYKYKVK LTPGVQKKGK AAKTALNSFM bmy_06163T0/1-846 GQPHPEDVLL FAIPICAPYN TMTNYKYKVK LTPGIQKKGK AAKTALNSFM ENSP00000298310/1-1076 GQPHPEDVLL FAIPICAPYT TMTNYKYKVK LTPGVQKKGK AAKTALNSFM BACU015321/1-1016 GQPHPEDVLL FAIPICAPYN TMTNYKYKVK LTPGIQKKGK AAKTALNSFM ENSBTAP00000006491/1-1079 GQPHSEDVLL FAIPICAPYT TMTNYKYKVK LTPGVQKKGK AAKTALNSFM 1051 1100 ENSTTRP00000007274/1-1074 HSKEATAREK DLFRSVKDTD LSRNIPGKVK VSAPNLLNVK RK bmy_06163T0/1-846 HSKEATAREK DLFRSVKDTD LSRNIPGKVK VSAPNLLNVK RK ENSP00000298310/1-1076 HSKEATAREK DLFRSVKDTD LSRNIPGKVK VSAPNLLNVK RK BACU015321/1-1016 HSKEATAREK DLFRSVKDTD LSRNIPGKVK VSAPNLLNVK RK ENSBTAP00000006491/1-1079 HSKEATAREK DLFRSVKDTD LSRNIPGKVK VSAPNLLNVK RK