KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:38 2014 Check: 00 .. Name: ENSP00000352248/1-324 Len: 353 Check: 542 Weight: 1.00 Name: ENSBTAP00000006504/1-324 Len: 353 Check: 385 Weight: 1.00 Name: ENSTTRP00000015279/1-290 Len: 353 Check: 9815 Weight: 1.00 Name: bmy_21994T0/1-334 Len: 353 Check: 2657 Weight: 1.00 Name: BACU015204/1-273 Len: 353 Check: 849 Weight: 1.00 // 1 50 ENSP00000352248/1-324 MFCGDYVQGT IFPAPNFNPI MDAQMLGGAL QGFDCDKDML INILTQRCNA ENSBTAP00000006504/1-324 MFCGDYVQGT IFPAPNFNPV LDAELLGGAL QGFGCDKDLL IDILTQRCNT ENSTTRP00000015279/1-290 ---------- ---------- ---------- ----CDKDLL IDILTQRCNA bmy_21994T0/1-334 ---------- ---------M MDAQMLGGAL QGFGCDKDLL IDILTQRCNA BACU015204/1-273 ---------- ---------M MDAQMLGGAL QGFGCDKDLL IDILTQRCNA 51 100 ENSP00000352248/1-324 QRMMIAEAYQ SMYGRDLIGD MREQLSDHFK DVMAGLMYPP PLYDAHELWH ENSBTAP00000006504/1-324 QRLLIAEAYL GAFSRDLVGD LKEKLSNHFK DVMVGLMYPP PSYDAHELWH ENSTTRP00000015279/1-290 QRLVIAEAYL STFGRDLVSD LKEKLSNHFK EVMVGLMYPP PSYDAHELWH bmy_21994T0/1-334 QRLVIAEAYL STFGRDLVSD LKEKLSDHFK AVMVGLMYPP PSYDAHELWH BACU015204/1-273 QRLVIAEAYL STFGRDLVSD LKEKLSDHFK EVMVGLMYPP PSYDAHELWH 101 150 ENSP00000352248/1-324 AMKGVGTDEN CLIEILASRT NGEIFQMREA YCLQYSNNLQ EDIYSETSGH ENSBTAP00000006504/1-324 AMKGAGTDEN CLIDILASRT NGEIFQMREA YYLQYSRDLQ EDIYSETSGH ENSTTRP00000015279/1-290 AMKGAGTDEN CLIDILASRT NGEIFQMREA YYLQYSRDLQ EDIYSETSGH bmy_21994T0/1-334 AMKGAGTDEN CLIDILASRT NGEIFQMREA YYLQYSRDLQ EDIYSETSGH BACU015204/1-273 AMKGAGTDEN CLIDILASRT NGEIFQMREA YYLQYSRDLQ EDIYSETSGH 151 200 ENSP00000352248/1-324 FRDTLMNLVQ GTREEGYTDP AMAAQDAM-- ---------- ---------- ENSBTAP00000006504/1-324 FRDMLVSLVQ GTREEGYTDP ATATQDAM-- ---------- ---------- ENSTTRP00000015279/1-290 FRDTLVNLVQ GTREEGYTDP ATAAQDAM-- ---------- ---------- bmy_21994T0/1-334 FRDTLVNLVQ GTREEGYTDP ATAAQDAMVT GQPWGDRGTL GTPAWGRGAT BACU015204/1-273 FRDTLVNLVQ GTREEGYTDP ATAAQDAM-- ---------- ---------- 201 250 ENSP00000352248/1-324 -------VLW EACQQKTGEH KTMLQMILCN KSYQQLRLVF QEFQNISGQD ENSBTAP00000006504/1-324 -------VLW EACQQRTGEH KTLLQLMLCN KSYQQLCLVF QEFQNISGQD ENSTTRP00000015279/1-290 -------VLW ESCQKRTGEH KTLLQMILCN KSYQQLWLVF QEFQTISGQD bmy_21994T0/1-334 WRPVMFQVLW ETCQQRTGEH KTLLQMILCN KSYQQLWLVF QEFQTISGQD BACU015204/1-273 -------VLW ETCQQRTGEH KTLLQMILCN KSYQQLWL-- ---------- 251 300 ENSP00000352248/1-324 MVDAINECYD GYFQELLVAI VLCVRDKPAY FAYRLYSAIH DFGFHNKTVI ENSBTAP00000006504/1-324 IVDAINECYD GYFRELLVAT VLCIRDKPAY FAYRLYSAIH DFGFHNKTVI ENSTTRP00000015279/1-290 IVDAINECYD GSFQELLVAI VLCVRDKPGY FAYRLYSAIH DFGFHNKTVI bmy_21994T0/1-334 IVDAINECYD GSFQELLVAI VLCVRDKPAY FAYRLYSAIH DFGFHNKTVI BACU015204/1-273 ---------- ---------- VLCVRDKPAY FAYRLYSAIH DFGFHNKTVI 301 350 ENSP00000352248/1-324 RILIARSEID LLTIRKRYKE RYGKSLFHDI RNFASGHYKK ALLAICAGDA ENSBTAP00000006504/1-324 RILIARSEID LMTIRKRYKE RYGKSLFHDI KNFASGHYEK ALLAICAGDA ENSTTRP00000015279/1-290 RILIARSEID LMTIRKRYKE RYGKSLFHDI KHFASGHYEK ALLAICAGDA bmy_21994T0/1-334 RILIARSEID LMTIRKRYKE RYGKSLFHDI KHFASGHYEK ALLAICAGDA BACU015204/1-273 RILIARSEID LMTIRKRYKE RYGKSLFHDI KHFASGHYEK ALLAICAGDA 351 400 ENSP00000352248/1-324 EDY ENSBTAP00000006504/1-324 DDY ENSTTRP00000015279/1-290 DDY bmy_21994T0/1-334 DDY BACU015204/1-273 DDY