KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:41 2014 Check: 00 .. Name: ENSTTRP00000006396/1-732 Len: 766 Check: 76 Weight: 1.00 Name: BACU019217/1-736 Len: 766 Check: 5166 Weight: 1.00 Name: ENSP00000395220/1-752 Len: 766 Check: 9539 Weight: 1.00 Name: bmy_15625T0/1-470 Len: 766 Check: 3339 Weight: 1.00 Name: ENSBTAP00000006517/1-752 Len: 766 Check: 7965 Weight: 1.00 // 1 50 ENSTTRP00000006396/1-732 MSKNSEFINL SFLLDHEKEM ILGVLKRDEY LKKVEDKRIR KLKSELLEAK BACU019217/1-736 MSKNSEFINL SFLLDHEKEM ILGVLKRDEY LKKVEDKRIR KLKNELLEAK ENSP00000395220/1-752 MSKNSEFINL SFLLDHEKEM ILGVLKRDEY LKKVEDKRIR KLKNELLEAK bmy_15625T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006517/1-752 --ENMCCVFL SFVLNWTRKG ELCFLFNYGL LQDIEYKRRG KLKNELLEAK 51 100 ENSTTRP00000006396/1-732 RRSGKTQQET GRVCAHCQRN LGLIFDRGDP CPACSLRVCS QCRVSGLDGS BACU019217/1-736 RRSGKTQQET SRVCAHCQRN LGLIFDRGDP CQACSLRVCG QCRVSGLDGS ENSP00000395220/1-752 RRSGKTQQEA SRVCVHCHRN LGLIFDRGDP CQACSLRVCR ECRVAGPNGS bmy_15625T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006517/1-752 RRSGKTQQET TRVCAHCQRN LGLIFDRGDP CQACSLRVCS QCRVSGLDGS 101 150 ENSTTRP00000006396/1-732 WRCTVCAKVA QLRIVTGEWF FEEKAKRFKH VSVLGTDVVR QSILRRSPXX BACU019217/1-736 WRCTICAKVA QLRIVTGEWF FEEKAKRFKH VSVLGTDVVR QSILRRSPGA ENSP00000395220/1-752 WKCTVCDKIA QLRIITGEWF FEEKAKRFKQ VNVLGTDVVR QSILRRSPGA bmy_15625T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006517/1-752 WRCTICARVA QLRIVTGEWF FEEKAKRFKH VNVLGTDVVR QSILRRSPGD 151 200 ENSTTRP00000006396/1-732 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEKGFLLSK FRSATRGEIV BACU019217/1-736 EEIQSQEQTH QNAEKSDTSL SAGRKASHDG PRKKGFLLSK FRSANRREIV ENSP00000395220/1-752 EEVQSQEQTR QDAEKSDTSP VAGKKASHDG PKRKGFLLSK FRSATRGEII bmy_15625T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006517/1-752 GEIQSQEQTH QNTEKSDALP SSGQKASHDG PRRKGFLLSK FRSATKGEII 201 250 ENSTTRP00000006396/1-732 TSKTESGRSY SLDLDSQNFR SLKSAPGSDR GSTGSSGSNE QEAGPGTPKS BACU019217/1-736 TSKTESGRSY SLDLDSQNFR SLKSAPGSDR GSTGSSDFNE QEAGPGTPRS ENSP00000395220/1-752 TPKTDTGRSY SLDLDGQHFR SLKSPPGSDR GSTGSSDLND QEPGPRTPKS bmy_15625T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006517/1-752 TPKTESGRSY SLDLDSHNFW SLKSALGSDR GSTGSSDFNE PEAGPGTPKS 251 300 ENSTTRP00000006396/1-732 IRSSGVTPVT QRSPAPSTRS VTSVSSREHG FENSMDLAAT ESTSEDHTKS BACU019217/1-736 FRSNGVTPVT QRSPAPSTRS VTSVSSREHG FENSMDLAAI ESTSEGLTKS ENSP00000395220/1-752 SRSNGVTPGT QSSPAPSTRT VTSVISREYG FENSMDLAAI EGTSQELTKS bmy_15625T0/1-470 ---------- ---------- ---------- ----MDFAAI ESTSEDLTKS ENSBTAP00000006517/1-752 VRSNGMTPGT PRSPAPSTRS VTSVSSRERG FENSTDLAAI ESTSEDLTKT 301 350 ENSTTRP00000006396/1-732 HHRKTSGAPS IAVSTASLSS DRSRSELDLN GSFTEDLEDT VSIRSKSVPG BACU019217/1-736 HHRRTSGTPS IAVSRASLSS DRSRSELDLI VSFTEDLEDT VSIRSKSVPG ENSP00000395220/1-752 HRRNTSGTPS IAVSGTSLSS DQSRSELDLS ESFTEDSEDT VSIRSKSVPG bmy_15625T0/1-470 RHRRTSGTPS IAVSRASLSS DRSRSELDLS GSFTEDLEDT VSIRSKSVPG ENSBTAP00000006517/1-752 HRRKPSSTPS IAVSRASLSS DRSRSELDLS GSFTEDLEDT ISIRSKSVPG 351 400 ENSTTRP00000006396/1-732 TSDKDLXXXX XXXXX----- ----XXXXXX XXXXXXXXXX XXXXXXXXXX BACU019217/1-736 ALDKDLVSDL YAIKNIYIYS FWLHRVLVAA SGIFSCSTRT LSCGMHAGSS ENSP00000395220/1-752 ALDK---DSL EETEE----- ----SIDALV SSQLSTNTHR LASGLSTSSQ bmy_15625T0/1-470 ALDXDL-DYL EETEE----- ----GIDDLA SSRFSANTHS LASGLSTNSQ ENSBTAP00000006517/1-752 ALDKDL-DSL EEMED----- ----GIDDLV SSRFSSNTHS LASGLSTNSQ 401 450 ENSTTRP00000006396/1-732 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019217/1-736 SPTRDRTRAP CIGSVESYPL DHQGSPDLYA -------IEV CKALLKDTCY ENSP00000395220/1-752 AGSDRKWTYL NVPDADSDTT SLNSMMSVYS ETGDYGNVKV SGEILLHISY bmy_15625T0/1-470 AGSDRKWTYL SVPDADSDTT SLNSMMSVYS ETGDYGNVKV SGEILLHISY ENSBTAP00000006517/1-752 AGSDRKWTYL SVPDADSDTT SLNSMMSVYS ETGDYGNVKV SGEILLHISY 451 500 ENSTTRP00000006396/1-732 XXXXXX---- ---------- ---------Y VKSYLLPDKS RNNKRKTRIR BACU019217/1-736 -HENFDVF-- ---------- ---------Y VKSYLLPDKS RNNKLKTKIR ENSP00000395220/1-752 CYKTGGLYIF VKNCRNLAIG DEKKQRTDAY VKSYLLPDKS RNNKRKTKIR bmy_15625T0/1-470 CYKTGGLYIF VKNCRNLAIG DEKKQRTDAY VKSYLLPDKS RNNKRKTKIR ENSBTAP00000006517/1-752 SYETGGLYIF VKNCRNLAIG DEKKQRTDAY VKSYLLPDKS RNNKRKTKIR 501 550 ENSTTRP00000006396/1-732 TGTNPEFNET LKYTISHAQL ETRTLQLSVW HYDRFGRNSF LGEVEIPFDS BACU019217/1-736 TGTNPEFNET LKYTISQRQL ETRTLQLSVW HYDRFGRNSF LGEVEIPFDS ENSP00000395220/1-752 TGTNPEFNET LKYTISHTQL ETRTLQLSVW HYDRFGRNSF LGEVEIPFDS bmy_15625T0/1-470 TGTNPEFNET LKYTISHSQL ETRTLQLSVW HYDRFGRNSF LGEVEIPFDS ENSBTAP00000006517/1-752 TGTNPEFNET LKYTISHAQL ETRTLQLSVW HYDRFGRNSF LGEVEIPFDS 551 600 ENSTTRP00000006396/1-732 WNFENPSDEW FVLQPKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019217/1-736 WNFENPSDEW FVLQPKVGNA SRCESNSYTS NEQNCRHRPE ESEDFQLSSD ENSP00000395220/1-752 WNFENPTDEW FVLQPKVEFA PDIGLQYKGE LTVVLRYIPP EENLMLPPEQ bmy_15625T0/1-470 WNFENPSDEW FVLQPKVEFA ADIGLQYKGE LTVILRYIPP EENLTLPLGQ ENSBTAP00000006517/1-752 WNFENPSDEW FVLQPKVECA ADISLQYKGE LTVMLRYIPP EEKLMPPLGQ 601 650 ENSTTRP00000006396/1-732 XXXXXXXXXX X--XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019217/1-736 NLKRRTRTSG IFFIHCNKHI HAHVPSTKSC SSKNKTWSLV SQSTTKCI-S ENSP00000395220/1-752 LQGNKTFKKG K--KKESPVI SGGILEVFIK EAKNLTAVKS GGTSDSFVKG bmy_15625T0/1-470 LQGKKTFKRG K--KKDSPVI SGGILEVFIK EAKNLTAVKS GGTSDSFVKG ENSBTAP00000006517/1-752 FQGKKTFKRG K--KKDPSII SGGILEVFIK EAKNLTAVKS GGTSDSFVKG 651 700 ENSTTRP00000006396/1-732 YLLPDDSKAT KHKTLVIKKS VNPQWNHTFV FTGLHPQDIK NVCLELTVWD BACU019217/1-736 YLLPDDSKAT KQKTLVIKKS VNPQWNHTFM FTGLHPQDLK NVCLELTVWD ENSP00000395220/1-752 YLLPDDSKAT KHKTLVIKKS VNPQWNHTFM FSGIHPQDIK NVCLELTIWD bmy_15625T0/1-470 YLLPDDSKAT KHKTLVIKKS VNPQWNHTFM FTGLHPQDLK NVCLELTVWD ENSBTAP00000006517/1-752 YLLPDDSKAT KHKTLVIKKS LNPQWNHTFV FSGLHPQDIK HVCLELTIWD 701 750 ENSTTRP00000006396/1-732 KEAFSSNIFL GGVRLNSGSG VSHGKTVDWM DSQGEEQRLW QKMVDNPGTL BACU019217/1-736 KEAFSSNIFL GGVRLNSGSG VSHGQTVGWM DSQGEEQRLW QKMTDNPGTP ENSP00000395220/1-752 KEAFSSNIFL GGVRLNSGSG VSHGKNVDWM DSQGEEQRLW QKMANNPGTP bmy_15625T0/1-470 KEAFSSNIFL GGVRLNSGSG VSHGQTVGWM DSQGEEQRLW QKMADNPGTP ENSBTAP00000006517/1-752 KEAFSSNIFL GGVRLNSGSG VSHGKNVDWM DSQGEEQRLW QKMADNPGTP 751 800 ENSTTRP00000006396/1-732 VEGVLMLRAS MGKSKL BACU019217/1-736 VEGVLMLRAS MGKSKL ENSP00000395220/1-752 FEGVLMLRSS MGKCRL bmy_15625T0/1-470 VEGVLMLRAS MGKSKL ENSBTAP00000006517/1-752 VEGVLMLRAS MGKTKL