KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:41 2014 Check: 00 .. Name: ENSP00000372023/1-586 Len: 592 Check: 5732 Weight: 1.00 Name: ENSBTAP00000006518/1-534 Len: 592 Check: 4578 Weight: 1.00 Name: bmy_01639T0/1-513 Len: 592 Check: 5756 Weight: 1.00 Name: BACU003363/1-349 Len: 592 Check: 1710 Weight: 1.00 Name: ENSTTRP00000011213/1-580 Len: 592 Check: 6138 Weight: 1.00 // 1 50 ENSP00000372023/1-586 MSRESDVEAQ QSHGSSAC-- ----SQPHGS VTQSQGSSSQ SQGISSSSTS ENSBTAP00000006518/1-534 MSRETNVERQ QPRGSASPQS QGGFSQSQGP SSQPHSSSSQ SQGTSS---- bmy_01639T0/1-513 MSRETDVECH QPHGSASPQS QGGFSQSHGP SSQPHGSSSQ SQGTSSSSTS BACU003363/1-349 MSRETDVECH QPHGSASPQS QGGFSQSHGP SSQPQGSSSQ SQGTSSSSTS ENSTTRP00000011213/1-580 MSRETDVECH QPHGSASPQS QGGFSQSHG- ------SSSQ SQGTSSSSTS 51 100 ENSP00000372023/1-586 TMPNSSQSSH SSSGTLSSLE TVSTQELYSI PEDQEPEDQE PEEPTPAPWA ENSBTAP00000006518/1-534 ------QSSH SSSGTLSSLD TVSTQELYSI PEDQE----- PEEPVPAPWA bmy_01639T0/1-513 TVPTSSQSSH SSSGTLSSLD TVSTQELYSI PEDQE----- PEEPVPAPWA BACU003363/1-349 TVPTSSQSSH SSSGTLSSLD TVSTQELYSI PEDQE----- PEEPVPASWA ENSTTRP00000011213/1-580 TVPTSSQSSH SSSGTLSSLD TVSTQELYSI PEDQE----- PEEPVPAPWA 101 150 ENSP00000372023/1-586 RLWALQDGFA NLETESGHVT QSDLELLLSS DPPASASQSA GIRGVRHHPR ENSBTAP00000006518/1-534 RLWALQDGFS NL-------- ---------- ---------- ---------- bmy_01639T0/1-513 RLWALQDGFS NL-------- ---------- ---------- ---------- BACU003363/1-349 RLWALQDGFS NL-------- ---------- ---------- ---------- ENSTTRP00000011213/1-580 RLWALQDGFS NLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 ENSP00000372023/1-586 PVCSLKCVND NYWFGRDKSC EYCFDEPLLK RTDKYRTYSK KHFRIFREVG ENSBTAP00000006518/1-534 -----DCIND SYWFGRDRNC EYCFDEPLLK STDKYRTYSK KHFRIFREMG bmy_01639T0/1-513 ---------- ---------- -----EPINT GLTARSTF-- ---------G BACU003363/1-349 -----ECVND SYWFGRDRNC EYCFDEPLLK RTDKYRTYSK KHFRIFR--- ENSTTRP00000011213/1-580 XXXXXXCVND SYWFGRDRNC EYCFDEPLLK RTDKYRTYSK KHFRIFREMG 201 250 ENSP00000372023/1-586 PKNSYIAYIE DHSGNGTFVN TELVGKGKRR PLNNNSEIAL SLSRNKVFVF ENSBTAP00000006518/1-534 PKNSYIAYIE DHSGNGTFVN RELVGKGRRL PLSNNSEIAL SVWSNKVFVF bmy_01639T0/1-513 SSDSYIAYIE DHSGNGTFVN RELVGKGRRL PLNNNSEIAL SVWSNKVFVF BACU003363/1-349 ---SMVRYI- ---------- ---------- ---------- ---------- ENSTTRP00000011213/1-580 PKNSYIAYIE DHSGNGTFVN KDLVGKGRRL PLNNNSEIAL SVWSNKVFVF 251 300 ENSP00000372023/1-586 FDLTVDDQSV YPKALRDEYI MSKTLGSGAC GEVKLAFERK TCKKVAIKII ENSBTAP00000006518/1-534 FDLTVDDQSV YPKELRDEYI MSKTLGSGAC GEVKLAFERK TCKKVAIKII bmy_01639T0/1-513 FDLTVDDQSV YPKELRDEYI MSKTLGSGAC GEVKLAFERK TCKKVAIKII BACU003363/1-349 ---------- ---------- ------NGAC GEVKLAFERK TCKKVAIKII ENSTTRP00000011213/1-580 FDLTVDDQSV YPKELRDEYI MSKTLGSGAC GEVKLAFERK TCKKVAIKII 301 350 ENSP00000372023/1-586 SKRKFAIGSA READPALNVE TEIEILKKLN HPCIIKIKNF FDAEDYYIVL ENSBTAP00000006518/1-534 SKRKFAIGSE READPALDVE TEIEILKKLN HPCIIKIKDF FDAEDYYIVL bmy_01639T0/1-513 SKRKFAIGSE READPALNVE TEIEILKKLN HPCIIKIKDF FDAEDYYIVL BACU003363/1-349 SKRKFAIGSE READPALNVE TEIEILKKLN HPCIIKIKDF FDAEDYYIVL ENSTTRP00000011213/1-580 SKRKFAIGSE READPALNVE TEIEILKKLN HSCIIKIKDF FDAEDYYIVL 351 400 ENSP00000372023/1-586 ELMEGGELFD KVVGNKRLKE ATCKLYFYQM LLAVQYLHEN GIIHRDLKPE ENSBTAP00000006518/1-534 ELMEGGELFD RVVGHKRLKE ATCKLYFYQM LLAVQYLHEN GIIHRDLKPE bmy_01639T0/1-513 ELMEGGELFD RVVGNKRLKE ATCKLYFYQM LLAVQYLHEN GIIHRDLKPE BACU003363/1-349 ELMEGGELFD RVVGNKRLKE ATCKLYFYQM LLAVQYLHEN GIIHRDLKPE ENSTTRP00000011213/1-580 ELMEGGELFD RVVGNKRLKE ATCKLYFYQM LLAVQYLHEN GIIHRDLKPE 401 450 ENSP00000372023/1-586 NVLLSSQEED CLIKITDFGH SKILGETSLM RTLCGTPTYL APEVLVSVGT ENSBTAP00000006518/1-534 NVLLSSPKED CLIKITDFGQ SKILGETSLM RTLCGTPTYL APEVLNSFGT bmy_01639T0/1-513 NVLLSSQKED CLIKITDFGQ SKILGETSLM RTLCGTPTYL APEVLNSFGT BACU003363/1-349 NVLLSSQKED CLIK------ ---------- ---------- ---------- ENSTTRP00000011213/1-580 NVLLSSQKED CLIKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 451 500 ENSP00000372023/1-586 AGYNRAVDCW SLGVILFICL SGYPPFSEHR TQVSLKDQIT SGKYNFIPEV ENSBTAP00000006518/1-534 AGYNRAVDCW SLGVILFICL SGYPPFSEHK TQVSLKDQIT SGKYNFIPEV bmy_01639T0/1-513 AGYNRAVDCW SLGVILFICL SGYPPFSEHK THVSLKDQIT SGKYNFIPEV BACU003363/1-349 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011213/1-580 XXXXXXXXXX XXXXXXXXXL SGYPPFSEHK THVSLKDQIT SGKCNFIPEV 501 550 ENSP00000372023/1-586 WAEVSEKALD LVKKLLVVDP KARFTTEEAL RHPWLQDEDM KRKFQDLLSE ENSBTAP00000006518/1-534 WAEVSEKALD LVKKLLIVDP KARFTTEEAL RHPWLQDEDM KRKFNNLLSE bmy_01639T0/1-513 WAEVSEKALD LVKKLLIVDP KARFTTEEAL RHPWLQDEDM KRKFKNLLFE BACU003363/1-349 ---------- ---------- ---------- ------DEDM KRKFKNLLFE ENSTTRP00000011213/1-580 WSEVSEEALD LVKKLLIVDP KARFTTEEAL RHPWLQDEDM KRKFKNLLFE 551 600 ENSP00000372023/1-586 ENESTALPQV LAQPSTSRKR PREGEAEGAE TTKRPAVCAA VL ENSBTAP00000006518/1-534 EDKLMAVTQV PAQPSTSRKR LLEGEAESAD PTKRLAVCAA VS bmy_01639T0/1-513 EEKSMTLPQV PAQPSTSRKR LLEGEAEDAD PTKRLAVCAA VS BACU003363/1-349 EEKSMTLPQV PAQPSTSRKR LLEGEAEDAD PTKRLAVCAA VS ENSTTRP00000011213/1-580 EEKSMTLPQV PAQPSTSQKR LLEGEAEDAD PTKRLAVCAA VS