KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:46 2014 Check: 00 .. Name: ENSP00000261396/1-1156 Len: 1243 Check: 6285 Weight: 1.00 Name: BACU009566/1-653 Len: 1243 Check: 37 Weight: 1.00 Name: ENSTTRP00000009155/1-1155 Len: 1243 Check: 3067 Weight: 1.00 Name: ENSBTAP00000006535/1-1156 Len: 1243 Check: 8898 Weight: 1.00 Name: bmy_20897T0/1-1241 Len: 1243 Check: 7990 Weight: 1.00 // 1 50 ENSP00000261396/1-1156 MFPAAPSPRT PGTGSRRGPL AGLGPGSTPR TASRKGLPLG SAVSSPVLFS BACU009566/1-653 MFPAVSSPRT PGPGARRGPL GGVGPGSTPR ATSRKGLALG SLVSSPVLFS ENSTTRP00000009155/1-1155 MFPAVSSPRT PGPGARRGPL GGVGPGSTPR ATSRKGLALG SSLSSPVLFS ENSBTAP00000006535/1-1156 MFPAVSSPRT PGTGTRRGPL GGVGPGSTPR ATSRKGLTLG SSLSSPVLFS bmy_20897T0/1-1241 MFPAVSSPRT PGPGARRGPL GGVGPGSTPR ATSRKGLALG SLVSSPVLFS 51 100 ENSP00000261396/1-1156 PVGRRSSLSS RGTPTRMFPH HSITESVNYD VKTFGSSLPV KVMEALTLAE BACU009566/1-653 PAGRRSSLSS RGTPTRIFPH HSITESVNYD VKTFGSSLPV KVMEALTLAE ENSTTRP00000009155/1-1155 PAGRRSSLSS RGTPTRIFPH HSITESVNYD VKTFGSSLPV KVMEALTLAD ENSBTAP00000006535/1-1156 PAGRRSSLSS RGTPTRIFPH HSITESVNYD VKTFGSSLPV KVIEALTLTE bmy_20897T0/1-1241 PAGRRSSLSS RGTPTRIFPH HSITESVNYD VKTFGSSLPV KVMEALTLAE 101 150 ENSP00000261396/1-1156 VDDQLTINID EGGWACLVCK EKLIIWKIAL SPITKLSVCK ELQLPPSDFH BACU009566/1-653 VDDQLTVHID EGGWACLVCR EKLIIWKIAL SPITKLSVCK ELQLPPTDFH ENSTTRP00000009155/1-1155 VDDQLTVHID EGGWACLVCK EKLIIWKIAL SPITKLSVCK ELQLPPTDFH ENSBTAP00000006535/1-1156 VDDQLTVHID EGGWACLVCK EKLIIWKIAL SPITKLSVCK ELQLPPSDFH bmy_20897T0/1-1241 VDDQLTVHID EGGWACLVCK EKLIIWKIAL SPITKLSVCK ELQLPPTDFH 151 200 ENSP00000261396/1-1156 WSADLVALSY SSPSGEAHST QAVAVMVATR EGSIRYWPSL AGEDTYTEAF BACU009566/1-653 WSANLVALSY SATSGEAHST QAVAVMVATR EGSIRYWPSL ASEDTYTETS ENSTTRP00000009155/1-1155 WSANLVALSY SATSGEAHST QAVAVMVATR EGSIRYWPRL ASEDTYTETS ENSBTAP00000006535/1-1156 WSADLVALSY SATSGEAHST QAVTVMVATR EGSIRYWPSL ASEDTYTETF bmy_20897T0/1-1241 WSANLVALSY SATSGEAHST QAVAVMVATR EGSIRYWPSL ASEDTYTETS 201 250 ENSP00000261396/1-1156 VDSGGDKTYS FLTAVQGGSF ILSSSGSQLI RLIPESSGKI HQHILPQGQG BACU009566/1-653 VDLGGDKTYS FLTTVQGGSF ILSSSGGQLI RLIPESVGKI HQHILPQGQG ENSTTRP00000009155/1-1155 VDLGGDKTCS FLTTVQGGSF ILSSSGGQLI RLIPESVGKI HQHILPQGQG ENSBTAP00000006535/1-1156 IDLGGDKTYS FLTAVQGGSF ILSSSGGQLI RLIPESIGKI HQHILPQGQG bmy_20897T0/1-1241 VDLGGDKTYS FLTTVQGGSF ILSSSGGQLI RLIPESVGKI HQHILPQGQG 251 300 ENSP00000261396/1-1156 MLSGIGRKVS SLFGILSPSS DLTLSSVLWD RERSSFYSLT SSNISKWELD BACU009566/1-653 VLSGIGRKVS SLLGILSPSS DLILSSVLWD RERSSFYSLT SSNISKWELD ENSTTRP00000009155/1-1155 VLSGIGRKVS SLLGILSSSS DLIXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000006535/1-1156 VLSGIGRKVS SLLGILSPSS DLILSSVLWD RERASFYSLT SSNISKWELD bmy_20897T0/1-1241 VLSGIGRKVS SLLGILSPSS DLILSSVLWD RERSSFYSLT SSNISKWELD 301 350 ENSP00000261396/1-1156 DSSEKHAYSW DINRALKENI TDAIWGSESN YEAIKEGVNI RYLDLKQNCD BACU009566/1-653 DSSEKQAHSW DINRVLKENI IDAIWGSESN YEAIKEGVNI RYLDLKQNCD ENSTTRP00000009155/1-1155 XXXXXXXXXX XXXXXXXXXX XXXXXGSESN YEAIKEGVNI RYLDLKQNCD ENSBTAP00000006535/1-1156 DSSEKQAHSW DINRVLKENI IDAIWGSESN YEAIKEGVNI RYLDLKQNCD bmy_20897T0/1-1241 DSSEKQAHSW DINRVLKENI IDAIWGSESN YEAIKEGVNI RYLDLKQNCD 351 400 ENSP00000261396/1-1156 GLVILAAAWH SADNPCLIYY SLITIEDNGC QMSDAVTVEV TQYNPPFQSE BACU009566/1-653 GLLILAAAWH LADKPCLVYY SLVTVEDNGY QMSDAVTVEV TQYNPPFQSE ENSTTRP00000009155/1-1155 GLLILSAAWH LADKPCLVYY SLVTVEDNGY QMSDAVTVEV TQYNPPFQSE ENSBTAP00000006535/1-1156 GLLILAAAWH LADSPCLVYY SLITVEDNGY QMSDAVTVEV TQYNPPFQSE bmy_20897T0/1-1241 GLLILAAAWH LADKPCLVYY SLVTVEDNGY QMSDAVTVEV TQYNPPFQSE 401 450 ENSP00000261396/1-1156 DLILCQLTVP NFSNQTAYLY NESAVYVCST GTGKFSLPQE KIVFNAQGDS BACU009566/1-653 DLIICQLMVP NFSNQTAYLY TESAVYVCST GTGKFSLPQE KIVFNTQGDS ENSTTRP00000009155/1-1155 DLIMCQLMVP NFSNQTAYLY TESAVYVCST GTGKFSLPRE KIVFNTQGDS ENSBTAP00000006535/1-1156 DLTICRLMVP NFSNQTACLY TENAVYMCST GTGKFSLPQE KIVFNTQGDS bmy_20897T0/1-1241 DLIICQLTVP NFSNQTAYLY TESAVYVCST GTGKFSLPQE KIAFNTQGDS 451 500 ENSP00000261396/1-1156 VLGAGACGGV PIIFSRNSGL VSITSRENVS ILAEDLEGSL ASSVAGPNSE BACU009566/1-653 ILGAGSCGGV PILFSRNSGL VSITSRENVS VLVEDLEDSL ASSVAGPGNE ENSTTRP00000009155/1-1155 ILGAGSCGGV PILFSRNSGL VSITSRENVS VLAEDLEDSL ASSVAGPGNE ENSBTAP00000006535/1-1156 ILGAGSCGGI PILFSRNSGL VSITSRENVS ILAEDLEDSL ASSVAGPGNE bmy_20897T0/1-1241 ILGAGSCGGV PILFSRNSGL VSITSRENVS VLVEDLEDSL ASSVAGPGNE 501 550 ENSP00000261396/1-1156 SMIFETTTKN ETIAQEDKIK LLKAAFLQYC RKDLGHAQMV VDELFSSHSD BACU009566/1-653 SVVFDTSTKN ETIAREDKTK LLKAAFLQYC RKDLGGAQTL VDELFSSHSD ENSTTRP00000009155/1-1155 SVVFDTSTKN ETIAREDKTK LLKAAFLQYC RKDLGHAQMI VDELFSSHSD ENSBTAP00000006535/1-1156 SVVFDTSTKN ETIAQEDKTK LLKAAFLQFC RKDLGHAQMI VDELFCSHSD bmy_20897T0/1-1241 SVVFDTSTKN ETIAREDKTK LLKAAFLQYC RKDFSRAQTL VDELFSSHSA 551 600 ENSP00000261396/1-1156 LDSDSELDRA VTQISVDLMD DYPASDPR-- WAESVPEEAP GFSNTSLIIL BACU009566/1-653 SDSDCELDRA VTQISVDLAD DYPASDPRST WVQ------- ---------- ENSTTRP00000009155/1-1155 SDSNCELDRA VTQISVDLVD DYPASDPR-- WAESVPEEAP GFSNTSLIIL ENSBTAP00000006535/1-1156 LDSDCELDKA VTQISVDLLD DYPASDPR-- WAESVPEEAP GFSNTSLIIL bmy_20897T0/1-1241 SDSDCELDRA VAQTSVDLAD DYPASDPR-- WAESVPEEAP GFSNTSLIIL 601 650 ENSP00000261396/1-1156 HQLEDKMKAH SFLMDFIHQV GLFGRLGSFP VRGTPMATRL LLCEHAEKLS BACU009566/1-653 ---------- QYVFDYSP-- ---------P AR-------- ---------- ENSTTRP00000009155/1-1155 HQLEDKMKAH SFLMDFIHQV GLFGRLGTFP VRGLPMATRL LLCEHAEKLA ENSBTAP00000006535/1-1156 HQLEDKMKAH SFLMDFIHQV GLFRRLSTFP VRGMPMATRL LLCEHAEKLA bmy_20897T0/1-1241 HQLEDKMKAH SFLMDFIHQV GLFGRLGTFP VRGLPMATRL LLCEHAEKLA 651 700 ENSP00000261396/1-1156 AAIVLKNHHS RLSDLVNTAI LIALNKREYE IPSNLTPADV FFREVSQVDT BACU009566/1-653 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 AAIVLKNHHS RLSDLVNTAI LMALNKRDCD IPCNLTPADV FFREVSQVDS ENSBTAP00000006535/1-1156 AAIILKNHHS RLPDLMNTVI LMALNKRDCD VPSNLTPADV FFREASQVDT bmy_20897T0/1-1241 AAIVLKNHHS RLSDLVNTAI LMALNKRDCD IPCNLTPADV FFREVSQVDT 701 750 ENSP00000261396/1-1156 ICECLLEHEE QVLRDAPMDS IEWAEVVINV NNILKDMLQA ASHYRQNRNS BACU009566/1-653 ---------- ---------- ---------- ---------- ----RQDESP ENSTTRP00000009155/1-1155 VWECLLEHEE QVLKDTALEP VEWAEVAISV NSILKDMLQA ASHYRQNRNS ENSBTAP00000006535/1-1156 ICECLLEHEE QVLKDTSMES VEWAEVVINV NSILKDMLQA ASHYRQNRNS bmy_20897T0/1-1241 ICECLLEHEE QVLKDTSLES VEWAEVVISV NSILKDMLQA ASHYRQNRSS 751 800 ENSP00000261396/1-1156 LYRREESLEK EPEYVPWTAT SGPGGIRTVI IRQHEIVLKV AYPQADSNLR BACU009566/1-653 FF----PYGL HPPSKPPS-- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 LYRREEPVEK EPEYIPWTAT SGPAGIRTAI VRQHGIVLKM VYPQADSNLR ENSBTAP00000006535/1-1156 LYRREESGGK EPEYIPWTAT SGPAGIRTAI MRQHRTVLKM VYPQADSNLR bmy_20897T0/1-1241 LYRREEPLEK EPEYIPWTAT SGPAGIRTAI VRQHGIVLKM VYPQADSNLR 801 850 ENSP00000261396/1-1156 NIVTEQLVAL IDCFLDGYVS QLKSVDKSSN RERYDNLEME YLQKRSDLLS BACU009566/1-653 ---------- --CCEQG--- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 NILTEQLVAL IDCFLDGYVS QLKSVDRSSD QERYNNLEME YLQKRSDLLS ENSBTAP00000006535/1-1156 NVLTEQLVAL IDGFLDGYVS QLKSVDKSSD QERYSSLEME YLQKRSDLLS bmy_20897T0/1-1241 NILTEQLVAL IDCFLDGYVS QLKSVDRSSD QERYNNLEME YLQKRSDLLF 851 900 ENSP00000261396/1-1156 PL-------- ---------- ---------- ---------- ---LSLGQYL BACU009566/1-653 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 PL-------- ---------- ---------- ---------- ---LTLGQYP ENSBTAP00000006535/1-1156 PL-------- ---------- ---------- ---------- ---LTLGQYP bmy_20897T0/1-1241 PLPCGDCLPS QTFIGTARPQ GRADKGRSRV GRGGTALQRR TRDVTLGQYP 901 950 ENSP00000261396/1-1156 WAASLAEKYC DFDILVQMCE QTDNQSRLQR YMTQFADQ-- ---------- BACU009566/1-653 WPGTWL--YC AF------CG SLQDSGR--- ---------- ---------- ENSTTRP00000009155/1-1155 WAASLAEKYC DFDILVQMCE QTDNQARLQR YMTQFADQ-- ---------- ENSBTAP00000006535/1-1156 WAASLAEKYC DFDILVQMCE QTDNQTRLQR YMTQFADQ-- ---------- bmy_20897T0/1-1241 WAASLAEKYC DFDILVQMCE QTDNQTRLQR YMTQFADQVT NPGGVGSGSF 951 1000 ENSP00000261396/1-1156 --NFSDFLFR WYLEKGKRGK LLSQPISQHG QLANFLQAHE HLSWLHEINS BACU009566/1-653 ---------- ---------- ---------- ---PFLTNSE VFHWV----- ENSTTRP00000009155/1-1155 --NFSDFLFR WYLEKGKRGK LLSQPISQHG QLANFLQAHE HLSWLHEINS ENSBTAP00000006535/1-1156 --NFSDFLFR WYLEKGKRGK LLSQPISQHG QLANFLQAHE HLSWLHEINS bmy_20897T0/1-1241 RINFSDFLFR WYLEKGKRGK LLSQPISQHG QLANFLQAHE HLSWLHEINS 1001 1050 ENSP00000261396/1-1156 QELEKAHATL LGLANMETRY FAKKKTLLGL SKLAALASDF SEDMLQEKIE BACU009566/1-653 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 QELEKAHATL LGLANMETRY FAKKKTLLGL SKLAALASDF PEDTLQGKIE ENSBTAP00000006535/1-1156 QELEKAHATL LGLANRETRY FAKKKTLLGL SKLAALASDF SEDTLQEKIE bmy_20897T0/1-1241 QELEKAHATL LGLANMETRY FAKKKTLLGL SKLAALASGF SDDTLQGKIE 1051 1100 ENSP00000261396/1-1156 EMAEQERFLL HQETLPEQLL AEKQLNLSAM PVLTAPQLIG ---------- BACU009566/1-653 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 EMAEQERFLL HQETLPEQLL AEKQLSLSAM PVLTAPQLIG ---------- ENSBTAP00000006535/1-1156 EMAEQERFLL HQETLPEQLL AEKRLSLSAM PVLTASQLIG ---------- bmy_20897T0/1-1241 EMAEQERFLL HQETLPEQLL GEKQLSLGAM PVLTAPQLIG KAVQMQKRCH 1101 1150 ENSP00000261396/1-1156 ---------- ---------- LYICEENRRA NEYDFKKALD LLEYIDEEED BACU009566/1-653 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009155/1-1155 ---------- ---------- LYICEENRRA NEYDFKKALD LLEYIDEEED ENSBTAP00000006535/1-1156 ---------- ---------- LYICEENRRA NEYDFKKALD LLEYIDEEED bmy_20897T0/1-1241 RITLNCSNYV TKKADNSKTS LYICEENRRA NEYDFKKALD LLEYIDEEED 1151 1200 ENSP00000261396/1-1156 ININDLKLEI LCKALQRDNW SSSDGKDDPI EVSKDSIFVK ILQKLLKDGI BACU009566/1-653 ---------- ---------- ----GHD--- ---------- ---------- ENSTTRP00000009155/1-1155 ININNLKLEI LCKALQRDNW SSSDGKDDPI EVSKDSIFVK ILQKLLKDGI ENSBTAP00000006535/1-1156 VNINDLKLEI LCKALQRDNW SSSDGKDDPI EVSKDSIFVK ILQKLLKDGI bmy_20897T0/1-1241 ININDLKLEI LCKALQRDNW SSSDGKDDPI EVSKDSIFVK ILQKLLKDGI 1201 1250 ENSP00000261396/1-1156 QLSEYLPEVK DLLQADQLGS LKSNPYFEFV LKANYEYYVQ GQI BACU009566/1-653 ---------- ---------- ---------- ---------- --- ENSTTRP00000009155/1-1155 QLSEYLPEVK DLLQSDQLGS LKSNPYFEF- LKANYEYYVQ GQM ENSBTAP00000006535/1-1156 QLSEYLPEVK ELLQADQLGS LKSNPYFEFV LKANYEYYVQ GQM bmy_20897T0/1-1241 QLSEYLPEVK DLLQADQLGS LKSNPYFEFV LKANYEYYVQ GQM