KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:49 2014 Check: 00 .. Name: BACU011406/1-830 Len: 832 Check: 5712 Weight: 1.00 Name: ENSP00000434849/1-513 Len: 832 Check: 1401 Weight: 1.00 Name: ENSBTAP00000006543/1-510 Len: 832 Check: 5647 Weight: 1.00 Name: bmy_07548T0/1-551 Len: 832 Check: 1766 Weight: 1.00 Name: ENSTTRP00000009405/1-515 Len: 832 Check: 1624 Weight: 1.00 // 1 50 BACU011406/1-830 MWATRGVLRP WALGLAWSPG TRAYGGGGGV SYTQGQSPEP RTREYFYYVD ENSP00000434849/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006543/1-510 ---------- ---------- ---------- ---------- ---------- bmy_07548T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009405/1-515 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011406/1-830 HQGQLFLDDS KLKNFITCFK DPQFLVTFFC RLRPNRSGRY EASFPFLSPC ENSP00000434849/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006543/1-510 ---------- ---------- ---------- ---------- ---------- bmy_07548T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009405/1-515 ---------- ---------- ---------- ---------- ---------- 101 150 BACU011406/1-830 GRERNFLRCE DRPVVFTHLL AAGPGPPRLS YCGGGEALAV PFEPARLLPL ENSP00000434849/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006543/1-510 ---------- ---------- ---------- ---------- ---------- bmy_07548T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009405/1-515 ---------- ---------- ---------- ---------- ---------- 151 200 BACU011406/1-830 ASNGRLYHPA PERAGGVGLL RSALAFELSA CFEYAPGAPE LPSHEAHPIG ENSP00000434849/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006543/1-510 ---------- ---------- ---------- ---------- ---------- bmy_07548T0/1-551 ---------- ---------- --------ML GTGLTTCVSG GASHRGQTVG ENSTTRP00000009405/1-515 ---------- ---------- ---------- ---------- ---------- 201 250 BACU011406/1-830 RLLRRLQLRG LRPVPQEMAP GAPALLLLSL LSLPGLPPRA TGCPAACRCY ENSP00000434849/1-513 ---------- -------MAL RAPALLPLLL LLL---PLRA AGCPAACRCY ENSBTAP00000006543/1-510 ---------- -------MAP GAPALLLLSL LSLPGLPPRA AACPAACRCY bmy_07548T0/1-551 RLLRRLQLRG LRPVPQEMAP GAPALLLLSL LSLPGLPPRA TGCPAACRCY ENSTTRP00000009405/1-515 ---------- -------MAP GAPALLLLSL LSLPGLPPRA AACPAACRCY 251 300 BACU011406/1-830 SATVECGALR LRLVPPGIPP GTQTLFLQDN SIARLEPGTL APLASLRRLY ENSP00000434849/1-513 SATVECGALR LRVVPLGIPP GTQTLFLQDN NIARLEPGAL APLAALRRLY ENSBTAP00000006543/1-510 SATVECGALR LRVVPPGIPP GTQTLFLQDN SIARLEPGIL APLASLRHLY bmy_07548T0/1-551 SATVECGALR LRLVPPGIPP GTQTLFLQDN SIARLEPGTL APLASLRRLY ENSTTRP00000009405/1-515 SATVECGALR LRLVPSGIPP GTQTLFLQDN SIARLEPGTL APLASLRRLY 301 350 BACU011406/1-830 LHNNSLRALE PGAFRAQSRL LELALTGNRV RGLRVGAFAG LAQLRVLYLA ENSP00000434849/1-513 LHNNSLRALE AGAFRAQPRL LELALTSNRL RGLRSGAFVG LAQLRVLYLA ENSBTAP00000006543/1-510 LHNNSLHALE SGAFRTQSRL LELALTGNRL RGLRVGAFAG LAQLRVLYLA bmy_07548T0/1-551 LHNNSLRALE PGAFRAQSRL LELALTGNRL RGLRVGAFAG LAQLRVLYLA ENSTTRP00000009405/1-515 LHNNSLRALE PGAFRAQSRL LELALTGNQL RGLRVGAFAG LAQLRVLYLA 351 400 BACU011406/1-830 GNQLVQLLDF TFLHLQRLQE LHLQENSIEL LEDQALAGLS SLALLDLSRN ENSP00000434849/1-513 GNQLARLLDF TFLHLPRLQE LHLQENSIEL LEDQALAGLS SLALLDLSRN ENSBTAP00000006543/1-510 GNQLVQLLDF TFLHLQRLQE LHLQENSIEL LEDQALAGLS SLALLDLSRN bmy_07548T0/1-551 GNQLVQLLDF TFLHLQRLQE LHLQENSIEL LEDQALAGLS SLALLDLSRN ENSTTRP00000009405/1-515 GNQLVQLLDF TFLHLQRLQE LHLQENSIEL LEDQALAGLS SLALLDLSRN 401 450 BACU011406/1-830 QLGTISQEAL QPLASLQVLR LTENPWRCDC ALHWLGTWIK EGGQRLLSSR ENSP00000434849/1-513 QLGTISREAL QPLASLQVLR LTENPWRCDC ALHWLGAWIK EGGQRLLTSR ENSBTAP00000006543/1-510 QLGTISREAL QPLASLQVLR LTENPWRCDC ALHWLGAWIK EGGQRLLSSR bmy_07548T0/1-551 QLGTISQEAL QPLASLQVLR LTENPWRCDC ALHWLGTWIK EGGQRLLSSR ENSTTRP00000009405/1-515 QLGTISQEAL QPLASLQVLR LTENPWRCDC ALHWLGTWIK EGGQRLLSSR 451 500 BACU011406/1-830 DKKITCAEPP RLALQSLLEV SGSSLICIPP SVHVEPLEVT ANLGEDLRVA ENSP00000434849/1-513 DRKIMCAEPP RLALQSLLDV SHSSLICIPP SVHVQPLELT ANLGEDLRVA ENSBTAP00000006543/1-510 DKKILCAEPP RLALQSLLEV SGSSLICIPP SVHVEPLEVT ANLGEDLRVA bmy_07548T0/1-551 DKKITCAEPP RLALQSLLEV SGSSLICIPP SVHVEPLEVT ANLGEDLRVA ENSTTRP00000009405/1-515 DKKITCAEPP RLALQSLLEV SGSSLICIPP SVHVEPLEVT ANLGEDLRIA 501 550 BACU011406/1-830 CQASGYPQPL VTWRKVAQPR EGPPQAQAQP EGGVPGPGGP GASDTGSGML ENSP00000434849/1-513 CQASGYPQPL VTWRKVPQPR EGRPRAQAQL EGGLLGLGGH SASDTGSGML ENSBTAP00000006543/1-510 CQASGYPQPL VTWRKVAQPR EGAPRAQAQP EVGWRGTGGL GASDTGSGML bmy_07548T0/1-551 CQASGYPQPL VTWRKVAQPR EGPPQAQAQP EGGVPGPGGP GASDTGSGML ENSTTRP00000009405/1-515 CQASGYPQPL VTWRKVAQPR EGPPQAQAQP GGGVPGPGGP GASDTGSGML 551 600 BACU011406/1-830 FLTNITLAHA GKYECEASNA GGAARLPFQL LVNLSQQLLL APA--PPRGR ENSP00000434849/1-513 FLSNITLAHA GKYECEASNA GGAARVPFRL LVNASRQQPQ QPAQPPPPAA ENSBTAP00000006543/1-510 FLTNITLAHA GKYECEASNA GGAARVPFQL LVNVSRQQQL APA--PPPAG bmy_07548T0/1-551 FLTNITLAHA GKYECEASNA GGAARLPFQL LVNLSQQLLL APA--PPRAG ENSTTRP00000009405/1-515 FLTNITLAHA GKYECEASNA GGAARLPFQL LVNLSQQLLL APA--PPRAG 601 650 BACU011406/1-830 GPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000434849/1-513 RPAGSEPRPE AGSMAFRALG VATQTAIAAA IALLALTALL LVAMICRRRR ENSBTAP00000006543/1-510 GPVSHEPLPE TGSMAFRALG LATQTAIAAA IALLALTALL LATMICRRRR bmy_07548T0/1-551 GPVSHEPLPE AGGMAFRALG LATQTAIATA IALLALTALL LATMICRRRR ENSTTRP00000009405/1-515 DPVSHEHLPE VGGMAFRALG LATQTAIATA IALLALTALL LATMICRRRR 651 700 BACU011406/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000434849/1-513 RRKKARGPPG EGALFVNDYL DGPCTFAQLE ELRDERGHEM FVIN------ ENSBTAP00000006543/1-510 RRKKAPGPSG EGALFVNDYS DGPCTFAQLE ELRDERGHEM FVID------ bmy_07548T0/1-551 RRKKAPGPPG EGALFVNDYS DGPCTFAQLE ELRDERGHEM FVID------ ENSTTRP00000009405/1-515 RRKKAPGPPG EGALFVNDYS DGPCTFAQLE ELRDERGHEM FVID------ 701 750 BACU011406/1-830 XXXXXXXXXX XXXXXXXXXX XXXXSPPAPS RSSPRARRKR PRAQRPESRR ENSP00000434849/1-513 ---------- ---------- ---------- -------RSK PLFAEGPAEA ENSBTAP00000006543/1-510 ---------- ---------- ---------- -------RSK PLFAEGPAEA bmy_07548T0/1-551 ---------- ---------- ---------- -------RSK PLFAEGPAEA ENSTTRP00000009405/1-515 ---------- ---------- ---------- -------RSK PLFAEGPAEA 751 800 BACU011406/1-830 ASRCSRLPPT RSVAEGGRGG RTLMTRAMRI GRPGSPRACS SVISKAWKLR ENSP00000434849/1-513 PADCG---PE QGAGPG---- -------LRV PPPV------ -----AYEIH ENSBTAP00000006543/1-510 AE--A---P- -GVAQG---- -------LPL QPPS------ -----AYEIH bmy_07548T0/1-551 AEGAA---P- -GIAQG---- -------LPL QPPA------ -----AYEIR ENSTTRP00000009405/1-515 AEGAA---P- -GVAQG---- -------LPL QPPA------ -----AYEIR 801 850 BACU011406/1-830 SVASRVWGSW ALGGAEAPAD PCRWKFWGAN GG ENSP00000434849/1-513 C--------- ---------- ---------- -- ENSBTAP00000006543/1-510 C--------- ---------- ---------- -- bmy_07548T0/1-551 C--------- ---------- ---------- -- ENSTTRP00000009405/1-515 C--------- ---------- ---------G GA