KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:50 2014 Check: 00 .. Name: ENSP00000230036/1-840 Len: 845 Check: 6259 Weight: 1.00 Name: ENSBTAP00000006557/1-839 Len: 845 Check: 3158 Weight: 1.00 Name: ENSTTRP00000000260/1-811 Len: 845 Check: 4564 Weight: 1.00 Name: bmy_10270T0/1-786 Len: 845 Check: 552 Weight: 1.00 Name: BACU017605/1-703 Len: 845 Check: 4035 Weight: 1.00 // 1 50 ENSP00000230036/1-840 MSAFRLWPGL LIMLGSLCHR GSPCGLSTHV EIGHRALEFL QLHNGRVNYR ENSBTAP00000006557/1-839 MSAFRFWSGL LMLLGFLCPR SSPCGISTHI EIGHRALEFL HLQDGSINYK ENSTTRP00000000260/1-811 MSTFRFWSGV LIALGSLCPR SSPCGISTHV EIGHRALELL HLQDRTVNYK bmy_10270T0/1-786 MSTFRFWSGV LIALGSLCPR SSPCGISTHI EIGHRALEFL HLQDRTVNYK BACU017605/1-703 ------MAG- ---------- ---------- --RHRALEFL NLQDRTVNYK 51 100 ENSP00000230036/1-840 ELLLEHQDAY QAGIVFPDCF YPSICKGGKF HDVSESTHWT PFLNASVHYI ENSBTAP00000006557/1-839 ELLLRHQDAY QAGSVFPDSF YPSICERGQF HDVSESTHWT PFLNASVHYI ENSTTRP00000000260/1-811 ELLLEHQDAY QAGTVFPDAF YPRICGRGQF HEVSESTHWT PFLNASIHYI bmy_10270T0/1-786 ELLLEHQDAY QAGTVFPDAF YPRICERGQF HEVSESTHWT PFLNASVHYI BACU017605/1-703 ELLLEHQDAY QAGTVFPDAF YPRICERG-- ---------- ---------- 101 150 ENSP00000230036/1-840 RENYPLPWEK DTEKLVAFLF GITSHMAADV SWHSLGLEQG FLRTMGAIDF ENSBTAP00000006557/1-839 RKNYPLPWDE DTEKLVAFLF GITSHMVADV NWHSLGIEQG FLRTMAAIDF ENSTTRP00000000260/1-811 RENYPLPWDK DTEKLVAFLF GITSHMVADV SWHSLGIEQG FLRTMGAIDF bmy_10270T0/1-786 RENYPLPWDK DTEKLVAFLF GITSHMVADV SWHSLGIEQG FLRTMGAIDF BACU017605/1-703 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000230036/1-840 HGSYSEAHSA GDFGGDVLSQ FEFNFNYLAR RWYVPVKDLL GIYEKLYGRK ENSBTAP00000006557/1-839 HNSYPEAHPA GDFGGDVLSQ FEFKFNYLSR HWYVPAEDLL GIYKELYGRV ENSTTRP00000000260/1-811 HGSYSEAHPA GDFGGDVLSQ FEFNFNYLSR HWYVPVDDLL EIYKKLYGRE bmy_10270T0/1-786 HGSYSEAHPA GDFGGDVLSQ FEFNFNYLSR HWYVPVEDLL EIYKKLYGRA BACU017605/1-703 ---------- ----GDVLSQ FEFNFNYLSR HWYVPVEDLL EIYKKLYGRE 201 250 ENSP00000230036/1-840 VITENVIVDC SHIQFLEMYG EMLAVSKLYP TYSTKSPFLV EQFQEYFLGG ENSBTAP00000006557/1-839 VITKKAIVDC SYLQFLEMYA EMLAISKLYP TYSVKSPFLV EQFQEYFLGG ENSTTRP00000000260/1-811 VITKNAIVDC SYLQFLEMYG EMLAASKLYT TYSRKSPFLV EQFQEYFLGG bmy_10270T0/1-786 VITKNAIVDC SYLQFLETYG EMLAISKLYP TYSRKSPFLV EQFQEYFLGG BACU017605/1-703 VITKNAIVDC SYLQFLEMYG EMLAISKLYP TYSRKSPFLV EQFQEYFLGG 251 300 ENSP00000230036/1-840 LDDMAFWSTN IYHLTSFMLE NGTSDCNLPE NPLFIACGGQ QNHTQGS-KM ENSBTAP00000006557/1-839 LEDMAFWSTN IYHLTSYMLK NGTSNCNLPE NPLFITCGGQ QNNTHGS-KV ENSTTRP00000000260/1-811 LDDMAFWSTN IYRLTSFMLK NGTSNCNLPE NPLFIACGIQ KNHTHSS-KV bmy_10270T0/1-786 LDDMAFWSTN IYRLTSFMLK NGTSNCNLPE NPLFITCGSQ QNNTHGSTKV BACU017605/1-703 LDDMAFWSTN IYRLTSFMLK NGTSNCNLPE NPLFITCGSQ QNNTHGSSKV 301 350 ENSP00000230036/1-840 QKNDFHRNLT TSLTESVDRN INYTERGVFF SVNSWTPDSM SFIYKALERN ENSBTAP00000006557/1-839 QKNGFHKNVT AALTKNIGKH INYTKRGVFF SVDSWTMDSL SFMYKSLERS ENSTTRP00000000260/1-811 QKNVFHRNVT AALTKDIGKN INYTKRGAFF SVDSWTVDSL SFMYQSLERS bmy_10270T0/1-786 QKNDFHRNVT AALTKDIGKN INYTKRGVFF SVDSWTTDSV SFMYQSLERS BACU017605/1-703 QKNDFHRNVT AALTKDIGKN INYTKRGVLF SVDSWTMDSL SFMYQSLERS 351 400 ENSP00000230036/1-840 IRTMFIGGSQ LSQKHVSSPL ASYFLSF--- -PYARLGWAM TSADLNQDGH ENSBTAP00000006557/1-839 IREMFIGSSQ -PLTHVSSPS ASYYLSF--- -PYTRLGWAM TSADLNQDGY ENSTTRP00000000260/1-811 IQEMFTGSSP -PLNHVSSPS ASYYLSF--- -PYTRLGWAM TSADLNQDGH bmy_10270T0/1-786 IQEMFTGSSQ -PQKHVSSPS ASYYLSF--- -PYTRLGWAM TSADLNQDGH BACU017605/1-703 IQEMFTGSSQ -PQKHVSSPS ASYYLSFPYX XPYTRLGWAM TSADLNQDGH 401 450 ENSP00000230036/1-840 GDLVVGAPGY SRPGHIHIGR VYLIYGNDLG LPPVDLDLDK EAHRILEGFQ ENSBTAP00000006557/1-839 GDLVVGAPGY SHPGRIHVGR VYLIYGNDLG LPPVDLDLDK EAHEILEGFQ ENSTTRP00000000260/1-811 GDLVMGAPGY SCPGHVHVGR VYLIYGSDLG LPLVDLDLDK EAHVILEGFQ bmy_10270T0/1-786 GDLVMGAPGY SRPGHIHVGR VYLIYGNDLG LPLVDLDLDK EAHGILEGFQ BACU017605/1-703 GDLVMGAPGY SRPGHIHVGR VYLIYGNDLG LPLVDLDLDK EAHGILEGFQ 451 500 ENSP00000230036/1-840 PSGRFGSALA VLDFNVDGVP DLAVGAPSVG SEQLTYKGAV YVYFGSKQGG ENSBTAP00000006557/1-839 PSGRFGSAVA VLDFNVDGVP DLAVGAPSVG SEKLTYTGAV YVYFGSKQGQ ENSTTRP00000000260/1-811 PSGRFGSAVA VLDFNKDGVP DLAVGAPSVG SEKLTYTGAV YIYFGSKQGR bmy_10270T0/1-786 PSGRFGSAVA VLDFNKDGVP DLAVGAPSVG SEKLTYTGAV YIYFGSKQGR BACU017605/1-703 PSGRFGSAVA VLDFNKDGMP DLAVGAPSVG SEKLTYTGAV YIYFGSKQGR 501 550 ENSP00000230036/1-840 MSSSPNITIS CQDIYCNLGW TLLAADVNGD SEPDLVIGSP FAPGGGKQKG ENSBTAP00000006557/1-839 LSSSPNVTIS CQDTYCNLGW TLLAADVNGD SEPDLVIGSP FAPGGGKQKG ENSTTRP00000000260/1-811 LSSSPNITIS CPDTYCNLGW TLLAADVNGD SEPDLVIGSP FAPGGGKQKG bmy_10270T0/1-786 LSSSPNITIS CPDTYCNLGW TLLAADVNGD SEPDLVIGSP FAPGGGKQKG BACU017605/1-703 LSSSPNITIS CLDTYCNLGW TLLAADVNGD SEPDLVIGSP FAPGGGRQKG 551 600 ENSP00000230036/1-840 IVAAFYSGPS LSDKEKLNVE AANWTVRGEE DFSWFGYSLH GVTVDNRTLL ENSBTAP00000006557/1-839 IVAAFYSGSS YSSQEKLNVE AANWMVKGEE DFAWLGYSLH GVNVNNRTLL ENSTTRP00000000260/1-811 IVAAFYSGSS HSDKEELNVE AANWMVRGDE DFAWLGYSLH GVSVNNRTLL bmy_10270T0/1-786 IVAAFYSGSS HSDKEELNVE AANWMVRGEE DFAWLGYSLH AVSVNNRTLL BACU017605/1-703 IVAVFYSGSS HSDKEELNVE AANWMVRGEE DFAWLGYSLH AVSVNNRTLL 601 650 ENSP00000230036/1-840 LVGSPTWKNA SRLGHLLHIR DEKKSLGRVY GYFPPNGQSW FTISGDKAMG ENSBTAP00000006557/1-839 LAGSPTWKDT SSQGHLFRTR DEKQSPGRVY GYFPPICQSW FTISGDKAMG ENSTTRP00000000260/1-811 LAGSPTWKNT SSLDHLFHTR DEKQNPGRVF GYFPPNCQSW FTISGDKAMG bmy_10270T0/1-786 LAGSPTWKNA SSLGHLFRAH DEKQSPGRVS GYFPPNCQTW FTISGDKAMG BACU017605/1-703 LAGSPTWKNA SSLGHLFRTR DEKQSPGRVS GYFPPNCQSW FTISGDKAMG 651 700 ENSP00000230036/1-840 KLGTSLSSGH VLMNGTLKQV LLVGAPTYDD VSKVAFLTVT LHQGGATRMY ENSBTAP00000006557/1-839 KLGTSLSSGH VMVNGTRTQV LLVGAPTQDV VSKVSFLTMT LHQGGSTRMY ENSTTRP00000000260/1-811 KLGTSLSSGH VMMNGTRTQV LLVGAPTQDV AAKMAFLTTT LRQGGSTRMY bmy_10270T0/1-786 KLGTSLSSGH VMMNGTRTQV LLVGAPTQDV TAKMAFLTTT LHQGGSTRMY BACU017605/1-703 KLGTSLSSGH VMMNGTRTQV LLVGAPTQDV LLKMAFLTTT LHQGGSTRMY 701 750 ENSP00000230036/1-840 ALTSDAQPLL LSTFSGDRRF SRFGGVLHLS DLDDDGLDEI IMAAPLRIAD ENSBTAP00000006557/1-839 ELTPDSQPSL LSTFSGNRRF SRFGGVLHLS DLDNDGSDEI IVAAPLRITD ENSTTRP00000000260/1-811 KLPPDLQPSL LSTFSGDRRF SRFGGVLHLS DLDNDGLDEI IMAAPLRITD bmy_10270T0/1-786 ELPPDSQPSL LSTFSGDRRF SRFGGVLHLS DLDNDGLDEI IMAAPLRITD BACU017605/1-703 ELPPDSQPSL LSTFNGDRRF SRFGGVLHLS DLDNDGLDEI IMAAPLRITD 751 800 ENSP00000230036/1-840 VTSGLIGGED GRVYVYNGKE TTLGDMTGKC KSWITPCPEE KAQYVLISPE ENSBTAP00000006557/1-839 ATAGLMGEED GRVYVFNGKQ ITVGDVTGKC KSWVTPCPEE KAQYVLISPE ENSTTRP00000000260/1-811 VTSGLMGGED GRVYVYNGKQ VTLGDMTGKC KSWVAPCPEE KAQYVLISPE bmy_10270T0/1-786 VTSGLMGGED GRVYVYNGKQ VTLGDMTGKC KSWVAPCPEE K--------- BACU017605/1-703 VTSGLMGGED GRVYVYNGKQ ITLGDMTGKC KSWVAPCPEE K--------- 801 850 ENSP00000230036/1-840 ASSRFGSSLI TVRSKAKNQV VIAAGRSSLG ARLSGALHVY SLGSD ENSBTAP00000006557/1-839 AGSRFGSSVI TVRSKEKNQV IIAAGRSSLG ARLSGVLHIY RLGQD ENSTTRP00000000260/1-811 AGSRFGSSMI TVRSKKK--- ---------- ---------- ----- bmy_10270T0/1-786 ---------- ---------- ---------- ---------- ----- BACU017605/1-703 ---------- -------NQV VIAAGKSSLG ARLSGALHVY SLGQD