KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:55 2014 Check: 00 .. Name: ENSBTAP00000006569/1-1421 Len: 1482 Check: 5901 Weight: 1.00 Name: ENSP00000341198/1-1461 Len: 1482 Check: 8348 Weight: 1.00 Name: BACU017935/1-1172 Len: 1482 Check: 3965 Weight: 1.00 Name: ENSTTRP00000014851/1-1450 Len: 1482 Check: 6339 Weight: 1.00 Name: bmy_19595T0/1-830 Len: 1482 Check: 3421 Weight: 1.00 // 1 50 ENSBTAP00000006569/1-1421 ---------- ---------- ---------- ---------- -SIGSSIRTF ENSP00000341198/1-1461 MAAERGARRL LSTPSFWLYC LLLLGRRAPG AAAARSGSAP QSPGASIRTF BACU017935/1-1172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014851/1-1450 --------RL LSNFSFWLCC MLLLERRASG AAAARSGSPP QSPGSSIRTF bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000006569/1-1421 TPFYFLVEPV DTLSVRGSSV TLNCSAYSEP SPKIEWKKDG TLLNLVSDDR ENSP00000341198/1-1461 TPFYFLVEPV DTLSVRGSSV ILNCSAYSEP SPKIEWKKDG TFLNLVSDDR BACU017935/1-1172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014851/1-1450 TPFYFLVEPV DTLSVRGSSG ILNCSAYSEP SPKIEWKKDG TFLNLVSDDR bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000006569/1-1421 RQLLPDGSLF ISSVVHSKHN KPDEGYYQCV ATVESLGTIV SRTAKLTVAG ENSP00000341198/1-1461 RQLLPDGSLF ISNVVHSKHN KPDEGYYQCV ATVESLGTII SRTAKLIVAG BACU017935/1-1172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014851/1-1450 RQLLPDGSLF ISNVVHSKHN KPDEGYYQCV ATVESL-TIV SRTAKLTVAG bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000006569/1-1421 LPRFASQPEP SSVYVGNSAV LNCEVNADLV PFVRWEQNKQ PLLLDDRVIK ENSP00000341198/1-1461 LPRFTSQPEP SSVYAGNNAI LNCEVNADLV PFVRWEQNRQ PLLLDDRVIK BACU017935/1-1172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014851/1-1450 LPRFSSQPEP SSVYVGNSAI LNCEVNADLV PFVRWEQNRQ PLLLDDRLTK bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000006569/1-1421 LPSGMLVISN ATEGDGGLYR CMVESGGPPK YSEEAELKVL PDPGATSNLV ENSP00000341198/1-1461 LPSGMLVISN ATEGDGGLYR CVVESGGPPK YSDEVELKVL PDPEVISDLV BACU017935/1-1172 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014851/1-1450 LPSGTLVISN ATEGDGGLYR CIVESGGPPK YSDEVELKVL PDPEVTSNLV bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000006569/1-1421 FLKQPSSLIR VIGQSAVLPC VASGLPTPSI RWVKNQETVD TESSGRLVLL ENSP00000341198/1-1461 FLKQPSPLVR VIGQDVVLPC VASGLPTPTI KWMKNEEALD TESSERLVLL BACU017935/1-1172 ---------- ---------- ---------- --MKNEEALD TESSERLVLL ENSTTRP00000014851/1-1450 FLKQPSSLVR VIGQSAVLPC VASGLPTPTI RWMKNEEALD TESSERLVLL bmy_19595T0/1-830 ---------- ---------- ---------- ---------- -------MLS 301 350 ENSBTAP00000006569/1-1421 AGGSLEIDDV TEDDAGTYFC IADNGNETIE AQAELTVQAQ PEFLKQPTNI ENSP00000341198/1-1461 AGGSLEISDV TEDDAGTYFC IADNGNETIE AQAELTVQAQ PEFLKQPTNI BACU017935/1-1172 AGGSLEISDV TEDDAGTYFC MADNGNETIE AQAELTVQAQ PEFLKQPTNI ENSTTRP00000014851/1-1450 AGGSLEISDV TEDDAGTYFC IADNGNETIE AQAELTVQAQ PEFLKQPTNI bmy_19595T0/1-830 LSHSLSLAHS HYSDQ----- ---------- ---------- ---------- 351 400 ENSBTAP00000006569/1-1421 YAHESMDIVF ECEVTGKPTP TVKWVKNGDM VIPSDYFKIV KEHNLQVLGL ENSP00000341198/1-1461 YAHESMDIVF ECEVTGKPTP TVKWVKNGDM VIPSDYFKIV KEHNLQVLGL BACU017935/1-1172 YAHESMDIVF ECEVTGKPTP TVKWVKNGDM VIPSDYFKIV KEHNLQVLGL ENSTTRP00000014851/1-1450 YAHESMDIVF ECEVTGKPTP TVKWVKNGDM VIPSDYFKIV KEHNLQVLGL bmy_19595T0/1-830 ------KVCL LCNVA---IP TLP------- --PTSLTSAT TDHL------ 401 450 ENSBTAP00000006569/1-1421 VKSDEGFYQC IAENDVGNAQ AGAQLIILEH ---------- ---------- ENSP00000341198/1-1461 VKSDEGFYQC IAENDVGNAQ AGAQLIILEH ---------- ---------- BACU017935/1-1172 VKSDEGFYQC IAENDVGNAQ AGAQLIILEH DVAIPTLPPT SLTSATTDHL ENSTTRP00000014851/1-1450 VKSDEGFYQC IAENDVGNAQ AGAQLIILEH ---------- ---------- bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000006569/1-1421 APATAGPLPS APRDVVASLV STRFIKLTWR TPASDPHGDN LTYSVFYTKE ENSP00000341198/1-1461 APATTGPLPS APRDVVASLV STRFIKLTWR TPASDPHGDN LTYSVFYTKE BACU017935/1-1172 APATTGPLPS APRDVVASLV STRFIKLTWR TPASDPHGDN LTYSVFYTKE ENSTTRP00000014851/1-1450 APATTGPLPS APRDVVASLV STRFIKLTWR TPASDPHGDN LTYSVFYTKE bmy_19595T0/1-830 APATTGPLPS APRDVVASLV STRFIKLTWR TPASDPHGDN LTYSVFYTKE 501 550 ENSBTAP00000006569/1-1421 GIARERVENT SRPGEMQVTI QNLMPATVYI FRVMAQNKHG PGESSAPLRV ENSP00000341198/1-1461 GIARERVENT SHPGEMQVTI QNLMPATVYI FRVMAQNKHG SGESSAPLRV BACU017935/1-1172 GVARERVENT SRPGEMQVTI QNLMPATVYI FRVMAQNKHG SGESSAPLRV ENSTTRP00000014851/1-1450 GIARERVENT SRPGEMQVTI QNLMPATVYI FRVMAQNKHG SGESSAPLRV bmy_19595T0/1-830 GIARERVENT SRPGEMQVTI QNLMPATVYI FRVMAQNKHG SGESSAPLRV 551 600 ENSBTAP00000006569/1-1421 ETQPEVQLPG PAPNIRACAT SPTSITVTWE TPLSGNGEIQ NYKLYYMEKG ENSP00000341198/1-1461 ETQPEVQLPG PAPNLRAYAA SPTSITVTWE TPVSGNGEIQ NYKLYYMEKG BACU017935/1-1172 ETQPEVQLPG PAPNIRAYAT SPTSITVTWE TPLSGNGEIQ NYKLYYMEKG ENSTTRP00000014851/1-1450 ETQPEVQLPG PAPNIRAYAT SPTSITVTWE TPLSGNGEIQ NYKLYYMEKG bmy_19595T0/1-830 ETQPEEAL-- -APEK----- --------WF SDIEYPPRCR YRHLPGFVYK 601 650 ENSBTAP00000006569/1-1421 TDKEQDVDVS SHSHTINGLK KYTEYSFRVV AYNKHGPGVS TQDVAVRTFS ENSP00000341198/1-1461 TDKEQDVDVS SHSYTINGLK KYTEYSFRVV AYNKHGPGVS TPDVAVRTLS BACU017935/1-1172 TDKEQDVDVS SHSHTINGLK KYTEYSFRVV AYNKHGPGVS TQDVAVRTFS ENSTTRP00000014851/1-1450 TDKEQDVDVS SHSHTINGLK KYTEYSFRVV AYNKHGPGVS TQDVAVRTFS bmy_19595T0/1-830 LGLEPDVDVS SHSHTINGLK KYTEYSFRVV AYNKHGPGVS TQDVAI---- 651 700 ENSBTAP00000006569/1-1421 DVPSAAPQNL SLEVRNSKSI VIHWQPPPPA AQNGEITGYK VRYRKASRKS ENSP00000341198/1-1461 DVPSAAPQNL SLEVRNSKSI MIHWQPPAPA TQNGQITGYK IRYRKASRKS BACU017935/1-1172 DVPSAAPQNL SLEVRNSKNI VIHWQPPPPA TQNGQITGYK VRYRKASRKS ENSTTRP00000014851/1-1450 DXXXXXXXXX XXXXXXXXSI VIHWQPPPPA TQNGQITGYR VRYRKASRKS bmy_19595T0/1-830 ---------- ---------I VIHWQPPPPA TQNGQITGYK VRYRKASRKS 701 750 ENSBTAP00000006569/1-1421 DVTETLVSGT QLSQLIEGLD RGTEYNFRVA ALTVNGTGPA TDWLSAETFE ENSP00000341198/1-1461 DVTETLVSGT QLSQLIEGLD RGTEYNFRVA ALTINGTGPA TDWLSAETFE BACU017935/1-1172 DVTETLVTGT QLSQLIEGLD RGTEYNFRVA ALTINGTGPA TDWLSAETFE ENSTTRP00000014851/1-1450 DVTETLVTGT QLSQLIEGLD RGTEYNFRVA ALTINGTGPA TDWLSAETFE bmy_19595T0/1-830 DVTETLVTGT QLSQLIEGLD RGTEYNFRVA ALTVNGTGPA TDWLSAETFE 751 800 ENSBTAP00000006569/1-1421 SDLDETRVPE VPSSLHVRPL VTSIVVSWTP PENQNIVVRG YAIGYGIGSP ENSP00000341198/1-1461 SDLDETRVPE VPSSLHVRPL VTSIVVSWTP PENQNIVVRG YAIGYGIGSP BACU017935/1-1172 SDLDETRVPE VPSSLHVRPL VTSIVVSWTP PENQNIVVRG YAIGYGIGSP ENSTTRP00000014851/1-1450 SDLDETRVPE VPSSLHVRPL VTSIVVSWTP PENQNIVVRG YAIGYGIGSP bmy_19595T0/1-830 SDLDETRVPE VPSSLHVRPL VTSIVVSWTP PENQNIVVRG YAI------- 801 850 ENSBTAP00000006569/1-1421 HAQTIKVDYK QRYYTIENLD PSSHYVITLK AFNNVGEGIP LYESAVTRPH ENSP00000341198/1-1461 HAQTIKVDYK QRYYTIENLD PSSHYVITLK AFNNVGEGIP LYESAVTRPH BACU017935/1-1172 HAQTIKVDYK QRYYTIENLD PSSHYVITLK AFNNVGEGIP LYESAVTRPH ENSTTRP00000014851/1-1450 HAQTIKVDYK QRYYTIENLD PSSHYVITLK AFNNVGEGIP LYESAVTRPH bmy_19595T0/1-830 ---------- ---------D PSSHYVITLK AFNNVGEGIP LYESAVTRPH 851 900 ENSBTAP00000006569/1-1421 TDTSEVDLFV INAPYTPVPD PTPMMPPVGV QASILSHDTI RITWADNSLP ENSP00000341198/1-1461 TDTSEVDLFV INAPYTPVPD PTPMMPPVGV QASILSHDTI RITWADNSLP BACU017935/1-1172 T--------- -------VPD PTPMMPPVGV QASILSHDTI RITWADNSLP ENSTTRP00000014851/1-1450 TDTSEVDLFV INAPYTPVPD PTPMMPPVGV QASILSHDTI RITWADNSLP bmy_19595T0/1-830 TDTSEVDLFV INAPYTPVPD PTPMMPPVGV QASILSHDTI RITWADNSLP 901 950 ENSBTAP00000006569/1-1421 KHQKITDSRY YTVRWKTNIP ANTKYKNANA TTLSYLVTGL KPNTLYEFSV ENSP00000341198/1-1461 KHQKITDSRY YTVRWKTNIP ANTKYKNANA TTLSYLVTGL KPNTLYEFSV BACU017935/1-1172 KHQKITDSRY YTVRWKTNIP ANTKYKNANA TTLSYLVTGL KPNTLYEFSV ENSTTRP00000014851/1-1450 KHQKITDSRY YTVRWKTNIP ANTKYKNANA TTLSYLVTGL KPNTLYEFSV bmy_19595T0/1-830 KHQKITDSRY YTVRWKTNIP ANTKYKNANA TTLSYLVTGL KPNTLYEFSV 951 1000 ENSBTAP00000006569/1-1421 MVTKGRRSST WSMTAHGTTF ELVPTSPPKD VTVVSKEGKP RTIIVNWQPP ENSP00000341198/1-1461 MVTKGRRSST WSMTAHGTTF ELVPTSPPKD VTVVSKEGKP KTIIVNWQPP BACU017935/1-1172 MVTKGRRSST WSMTAHGTTF ELVPTSPPKD VTVVSKEGKP RTIIVNWQPP ENSTTRP00000014851/1-1450 MVTKGRRSST WSMTAHGTTF ESAPASPPKD VTVVSKEGKP RTIIVNWQPP bmy_19595T0/1-830 MVTKGRRSST WSMTAHGTTF ELVPTSPPKD VTVVSKEGKP RTIIVNWQPP 1001 1050 ENSBTAP00000006569/1-1421 SEANGKITGY IIYYSTDVNA EIHDWVIEPV VGNRLTHQIQ ELTLDTPYYF ENSP00000341198/1-1461 SEANGKITGY IIYYSTDVNA EIHDWVIEPV VGNRLTHQIQ ELTLDTPYYF BACU017935/1-1172 SEANGKITGY IIYYSTDVNA EIHDWVIEPV VGNRLTHQIQ ELTLDTPYYF ENSTTRP00000014851/1-1450 SEANGKITGY IIYYSTDVNA EIHDWVIEPV VGNRLTHQIQ ELTLDTPYYF bmy_19595T0/1-830 SEANGKITGY IIYYSTDVNA EIHDWVIEPV VGNRLTHQIQ ELTLDTPYYF 1051 1100 ENSBTAP00000006569/1-1421 KIQARNSKGM GPMSEAVQFR TPKADSSDKM ANDQASGSAG KGSRLPDLGS ENSP00000341198/1-1461 KIQARNSKGM GPMSEAVQFR TPKADSSDKM PNDQASGSGG KGSRLPDLGS BACU017935/1-1172 RIQARNSKGM GPMSEAVQFR TPKA------ -----SGSAG KGSRLPDLGS ENSTTRP00000014851/1-1450 KIQARNSKGM GPMSEAVQFR TPKADSSDKM ANDQXXXXXX XXXXXXXXXX bmy_19595T0/1-830 KIQARNSKGM GPMSEAVQFR TPKADSSDKM ANDQ------ ---------- 1101 1150 ENSBTAP00000006569/1-1421 DYKPPMSGSN SPHGSPTSPL DSNMLLVIIV SVGVITIVVV VIIAVFCTRR ENSP00000341198/1-1461 DYKPPMSGSN SPHGSPTSPL DSNMLLVIIV SVGVITIVVV VIIAVFCTRR BACU017935/1-1172 DYKPPMSGSN SPHGSPTSPL DSNMLLVIIV SVGVITIVVV VIVAVFCTRR ENSTTRP00000014851/1-1450 XXXXXXXXSN SPHGSPTSPL DSNMLLVIIV SVGVITIVVV VIIAVFCTRR bmy_19595T0/1-830 -------GSN SPHGSPTSPL DSNMLLVIIV SVGVITIVVV VIIAVFCTRR 1151 1200 ENSBTAP00000006569/1-1421 TTSHQKKKRA ACKSVNGSHK YKGNSKDVKP PDLWIHHERL ELKPIDKSPD ENSP00000341198/1-1461 TTSHQKKKRA ACKSVNGSHK YKGNSKDVKP PDLWIHHERL ELKPIDKSPD BACU017935/1-1172 TTSHQKKKRA ACKSVNGSHK YKGNSKDVKP PDLWIHHERL ELKPIDKSPD ENSTTRP00000014851/1-1450 TTSHQKKKRA ACKSVNGSHK YKGNSKDVKP PDLWIHHERL ELKPIDKSPD bmy_19595T0/1-830 TTSHQKKKRA ACKSVNGSHK YKGNSKDVKP PDLWIHHERL ELKPIDKSPD 1201 1250 ENSBTAP00000006569/1-1421 PNPIMTDTPI PRNSQDITPV DNSMDSNIHQ RRNSYRGHES EDSMSTLAGR ENSP00000341198/1-1461 PNPIMTDTPI PRNSQDITPV DNSMDSNIHQ RRNSYRGHES EDSMSTLAGR BACU017935/1-1172 PNPIMTDTPI PRNSQDITPV DNSMDSNIHQ RRNSYRGHES EDSMSTLAGR ENSTTRP00000014851/1-1450 PNPIMTDTPI PRNSQDITPV DNSMDSNIHQ RRNSYRGHES EDSMSTLAGR bmy_19595T0/1-830 PNPIMTDTPI PRNSQDITPV DNSMDSNIHQ RRNSYRGHES EDSMSTLAGR 1251 1300 ENSBTAP00000006569/1-1421 RGMRPKMMMP FDSQPPQPVI SAHPIHSLDN PHHHFHSSSL ASPARSHLYH ENSP00000341198/1-1461 RGMRPKMMMP FDSQPPQPVI SAHPIHSLDN PHHHFHSSSL ASPARSHLYH BACU017935/1-1172 RGMRPKMMMP FDSQPPQPVI SAHPIHSLDN PHHHFHSSSL ASPARSHLYH ENSTTRP00000014851/1-1450 RGMRPKMMMP FDSQPPQPVI SAHPIHSLDN PHHHFHSSSL ASPARSHLYH bmy_19595T0/1-830 RGMRPKMMMP FDSQPPQPVI SAHPIHSLDN PHHHFHSSSL ASPARSHLYH 1301 1350 ENSBTAP00000006569/1-1421 PGSPWPIGTS MSLSDRANST VESVRNTPST DTMPASSSQT CCTDHQDPEG ENSP00000341198/1-1461 PGSPWPIGTS MSLSDRANST -ESVRNTPST DTMPASSSQT CCTDHQDPEG BACU017935/1-1172 PGSSWPIGTS MSLSDRASST -ESVRNTPST DTMPASSSQT CCTDHQDPEG ENSTTRP00000014851/1-1450 PGSSWPIGTS MSLSDRANST -ESVRN-PST DTMXXXXXXX XXXXXXXXXX bmy_19595T0/1-830 PGSSWPIGTS MSLSDRANST ---------- ---------- ---------- 1351 1400 ENSBTAP00000006569/1-1421 ATSSSYLASS QEEDSGQSLP TAHVRPSHPL KSFAVPAIPP TGPPTYDPAL ENSP00000341198/1-1461 ATSSSYLASS QEEDSGQSLP TAHVRPSHPL KSFAVPAIPP PGPPTYDPAL BACU017935/1-1172 ATSSSYLASS QEEDSGQSLP TAHVRPSHPL KSFAVPAIPP PGPPTYDPAL ENSTTRP00000014851/1-1450 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000006569/1-1421 PSTPLLSQQA LNHHIHAVKT ASIGTLGRSR PPMPVVVPSA PEVQETTRML ENSP00000341198/1-1461 PSTPLLSQQA LNHHIHSVKT ASIGTLGRSR PPMPVVVPSA PEVQETTRML BACU017935/1-1172 PSTPLLSQQA LNHHIHSVKT ASIGTLGRSR PPMPVVVPSA PEVQETTRML ENSTTRP00000014851/1-1450 XXXXXXXXXX LNHHIHSVKT ASIGTL-RSR PPMPVVVPSA PXXXXXXXXX bmy_19595T0/1-830 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000006569/1-1421 EDSESSYEPD ELTKEMAHLE GLMKDLNAIT TA ENSP00000341198/1-1461 EDSESSYEPD ELTKEMAHLE GLMKDLNAIT TA BACU017935/1-1172 EDSESSYEPD ELTKEMAHLE GLMKDLNAIT TA ENSTTRP00000014851/1-1450 XXXXXSYEPD ELTKEMAHLE GLMKDLNAIT TA bmy_19595T0/1-830 ---------- ---------- --------VL SA