KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:56 2014 Check: 00 .. Name: BACU018361/1-1286 Len: 1380 Check: 826 Weight: 1.00 Name: ENSP00000363779/1-1332 Len: 1380 Check: 4717 Weight: 1.00 Name: bmy_22418T0/1-1098 Len: 1380 Check: 8746 Weight: 1.00 Name: ENSBTAP00000006570/1-1191 Len: 1380 Check: 2298 Weight: 1.00 // 1 50 BACU018361/1-1286 MRNLKLFQSL EFRDIQAPGK PQCFSLRTEQ DTVLIGSAHG LIEVDPVARE ENSP00000363779/1-1332 MRNLKLFRTL EFRDIQGPGN PQCFSLRTEQ GTVLIGSEHG LIEVDPVSRE bmy_22418T0/1-1098 MRNLKLFRSL EFRDIQAPGK PQCFSLRTEQ DTVLLGSEHG LIEVDPVTRE ENSBTAP00000006570/1-1191 MRNLKLLRSL EFRDIQAQGK PRCLCLRAEQ ATVLIGSEHG LVEVDPVTRE 51 100 BACU018361/1-1286 VKNEIPLVTE GFLPEDGSGC IVGVQELLDH ESACVATASG DVLLCNLNTH ENSP00000363779/1-1332 VKNEVSLVAE GFLPEDGSGR IVGVQDLLDQ ESVCVATASG DVILCSLSTQ bmy_22418T0/1-1098 VKNHTPLVAE GFLPEHGSGC IVGIQELLDH ESVCVATASG DVLLCNLNTH ENSBTAP00000006570/1-1191 VKHEIPLVAE GFLPEDGSGC IIGIQDLLDQ ESVCVATASG DVLLCNLNTH 101 150 BACU018361/1-1286 QLECVGSVAS GISVMSWSPD QELVLLATGQ QTLIMMTKEF EPIMEQQIHQ ENSP00000363779/1-1332 QLECVGSVAS GISVMSWSPD QELVLLATGQ QTLIMMTKDF EPILEQQIHQ bmy_22418T0/1-1098 QLECVGSVAS GISVMSWSPD QELVLLATGQ QTLIMMTKEF EPIMEQQIHQ ENSBTAP00000006570/1-1191 QLECVGSVAS GISVMSWSPD QELLLLATGQ QTLIMMTKDF EPIMEQQIHQ 151 200 BACU018361/1-1286 DDFGESKFIT VGWGRKETQF HGSEGRQAAF QLQMVRLDNI YHSALS---- ENSP00000363779/1-1332 DDFGESKFIT VGWGRKETQF HGSEGRQAAF QMQM------ HESALPWDDH bmy_22418T0/1-1098 DDFGESKFIT VGWGRKETQF HGSEGRQAAF QMQM------ HESALPWDDH ENSBTAP00000006570/1-1191 DDFGESKFIT VGWGRKETQF HGSEGRQAAF QMQM------ HESALPWDDH 201 250 BACU018361/1-1286 ---------- --FAVVVFLP LSTTQGLERS ECGAGSLLYS QPVS------ ENSP00000363779/1-1332 RPQVTWRGDG QFFAVSVVCP ETGARKVRVW NREFALQSTS EPVAGLGPAL bmy_22418T0/1-1098 RPQVTWRGDG QFFAXSVVCP ETGARKVRVW SREFALQSTS EPVAGLGPAL ENSBTAP00000006570/1-1191 SPQVTWRGDG QFFAVSVVCP ETGARKVRVW SREFALQSTS EPVAGLGPAL 251 300 BACU018361/1-1286 LWQDWDLLWL GSEWEKKPCN ----FFPENF LVLGW----- ---------E ENSP00000363779/1-1332 AWKPSGSLIA ST--QDKPNQ QDIVFFEKNG LLHGHFTLPF LKDEVKVNDL bmy_22418T0/1-1098 AWKPSGSLIA ST--QDKPNQ QDVVFFEKNG LLHGHFTLPF LKDEVKVNDL ENSBTAP00000006570/1-1191 AWKPSGSLIA ST--QDKPNQ QDVVFFEKNG LLHGQFTLPF FKDEVKVNGL 301 350 BACU018361/1-1286 WWY----LLN VGVYKTQR-D NYFFSFGFQL WTVGNYHWYL KQSLPFSTCG ENSP00000363779/1-1332 LWNADSSVLA VWLEDLQREE SSIPKTCVQL WTVGNYHWYL KQSLSFSTCG bmy_22418T0/1-1098 LWNADSTVLA VWLEDLQREE NSTLKTYVQL WTVGNYHWYL KQSLPFGTCG ENSBTAP00000006570/1-1191 FWNADSTVLA VWLEELQREE NSSLKTYVQL WTVGNYHWYL KQSLPFDTCG 351 400 BACU018361/1-1286 KSKIVSLMWD PVTLYRLHVL CQGWHYLCYD WHWTTDRSSG ENLSDMANVA ENSP00000363779/1-1332 KSKIVSLMWD PVTPYRLHVL CQGWHYLAYD WHWTTDRSVG DNSSDLSNVA bmy_22418T0/1-1098 KSKIVSLMWD PVTPYRLHVL CQGWHYLCYD WHWTTDRSSG ENLSDMANVA ENSBTAP00000006570/1-1191 KSKIVSLLWD PVSPYRLHVL CQGWHYLCYD WHWTTDRSSG DNLSDMANVA 401 450 BACU018361/1-1286 VVDGNALFYK LNIHVSHPLS LSHADRVLVT VFRQSVVPPP MCTYRLLLPH ENSP00000363779/1-1332 VIDGN----- ---------- -----RVLVT VFRQTVVPPP MCTYQLLFPH bmy_22418T0/1-1098 VVDGN----- ---------- -----RVLVT VFRQSVVPPP MCTYRLLLPH ENSBTAP00000006570/1-1191 VIDGN----- ---------- -----RVLVT VFRQSVVPPP MCTYRLQLPH 451 500 BACU018361/1-1286 PVNQIMFSAH PKKSNDLAVL DASNQISVYK CGKMFVVYYD SICIFFSLGD ENSP00000363779/1-1332 PVNQVTFLAH PQKSNDLAVL DASNQISVYK C--------- --------GD bmy_22418T0/1-1098 PVNQIMFSAH PKKSNDLAVL DASNQISVYK C--------- --------GD ENSBTAP00000006570/1-1191 SVNQVMFSAR PEKSNDLAVL DASNQISVYK C--------- --------GD 501 550 BACU018361/1-1286 SPSVDSTVKL GAVGGNGFNI SLRTPHLDKR YTIQFENSED EEVNPLKLSL ENSP00000363779/1-1332 CPSADPTVKL GAVGGSGFKV CLRTPHLEKR YKIQFENNED QDVNPLKLGL bmy_22418T0/1-1098 SPSVDSTVKL GAVGGNGFNI SLGTPHLDKR YTIQFENSED EEVNPLKLSL ENSBTAP00000006570/1-1191 SPSIDCTVKL GAVGGNGFKI SLRTPHLDKR YKIPIEDSEA EEVNPLKFSL 551 600 BACU018361/1-1286 LTWVQEDIFL AVSHSQSSPQ SVIHHLTVAP SETDDEQGQL NISSSVTVDG ENSP00000363779/1-1332 LTWIEEDVFL AVSHSEFSPR SVIHHLTAAS SEMDEEHGQL NVSSSAAVDG bmy_22418T0/1-1098 LAWVQEDVFL AVSHSQSSPW SVLHHLTVAP SETDDEQGQL NISSSVTVDG ENSBTAP00000006570/1-1191 LAWVQEDVFL AVSHSQSGPQ SAIHHLTVAP SETDDKQGQL NISSSVTVDG 601 650 BACU018361/1-1286 VIISLCCNSK TKSVALQLAG GQILKYLWEK LTLRA---VT QELIALSRRS ENSP00000363779/1-1332 VIISLCCNSK TKSVVLQLAD GQIFKYLWES PSLAIKPWKN SGGFPVRFPY bmy_22418T0/1-1098 VIISLCCNSK TKSVALQVAG GQILKYLWES PSLAVEPWKN PDGFPVRFPY ENSBTAP00000006570/1-1191 VIISLCCNPK TKSVALQVAG GQIFKYLWES PSLAVEPWKN PGGLPVRFPY 651 700 BACU018361/1-1286 VCFGELFVIS YFISLQECVL GLTDRCRFFI SDTEVASNIT SFAVYDEFLL ENSP00000363779/1-1332 PCTQTELAM- --IGEEECVL GLTDRCRFFI NDIEVASNIT SFAVYDEFLL bmy_22418T0/1-1098 PCTQTELAM- --VGGEECVL GLTDRCRFFI NDTEVASNIT SFAVYDEFLL ENSBTAP00000006570/1-1191 PCTQTELAM- --VGGEECIL GLTDRCRFFI NDTEVASNIT SFAVYDEFLL 701 750 BACU018361/1-1286 LTTHSHTCQC FCLRDASLKT LQAGLSSSHV SNGESLRKVE RGSRIVTVVP ENSP00000363779/1-1332 LTTHSHTCQC FCLRDASFKT LQAGLSSNHV SHGEVLRKVE RGSRIVTVVP bmy_22418T0/1-1098 LTTHSHTCQC FCLRDASLKT LHSGLSSSHV PNGESLRKVE RGSRIVTVVP ENSBTAP00000006570/1-1191 VTTHSHTCQC FCLRDASLKT LQAGLSSSHV PNGESLRKVE RGSRIVTVVP 751 800 BACU018361/1-1286 QDTKLILQMP RGNLEVVHHR ALVLAQIRKW LDKLMFKEAF ECMRKLRINL ENSP00000363779/1-1332 QDTKLVLQMP RGNLEVVHHR ALVLAQIRKW LDKLMFKEAF ECMRKLRINL bmy_22418T0/1-1098 QDTKLILQMP RGNLEVVHHR ALVLAQIRKW LDKLMFKEAF ESMRKLRINL ENSBTAP00000006570/1-1191 QDTKLILQMP RGNLEVVHHR ALVLAQIRKW LDKLMFKEAF ECMRKLRINL 801 850 BACU018361/1-1286 NLIHDHNPKV FLENVETFII QIDSVNHINL FFTELKEEDV TKTMYPPPVT ENSP00000363779/1-1332 NLIYDHNPKV FLGNVETFIK QIDSVNHINL FFTELKEEDV TKTMYPAPVT bmy_22418T0/1-1098 NLIHDHNPKV FLENVETFIR QIDSVNHINL FFTELKEEDV TKTMYPPPVT ENSBTAP00000006570/1-1191 NLIHDHNPKV FLENVETFIR QIDSVNHINL FFTELKEEDV TKTMYPPPVP 851 900 BACU018361/1-1286 STVQLSSDPD GKKVDLICDA MRAAMENINP HKYCLSILTS HVKKTTPELE ENSP00000363779/1-1332 SSVYLSRDPD GNKIDLVCDA MRAVMESINP HKYCLSILTS HVKKTTPELE bmy_22418T0/1-1098 STVQLSSDPD KKKVDLICDA MRAAMENINP HKYCLSILTS HVKKTTPELE ENSBTAP00000006570/1-1191 STVPLSSDPD EKKVDLICDA MRAAMENINP HKYCLSILTS HVKKTTPELE 901 950 BACU018361/1-1286 IVLQKVHELQ GSAAPVPDAV SAEEALKYLL LLVDVNELYD HSLGTYDFDL ENSP00000363779/1-1332 IVLQKVHELQ GNAPSDPDAV SAEEALKYLL HLVDVNELYD HSLGTYDFDL bmy_22418T0/1-1098 IVLQKVHELQ GSAAPVPDAV SAEEALKYLL LLVDVNELYD HSLGTYDFDL ENSBTAP00000006570/1-1191 IALQKVHKLQ GSAPPVPDTV SAEEALKYLL LLVDVNELYD HSLGTYDFDL 951 1000 BACU018361/1-1286 VLMVAEKSQK DPKEYLPFLN TLKKMETNYQ RFTIDKYLKR YEKAIGHLSK ENSP00000363779/1-1332 VLMVAEKSQK DPKEYLPFLN TLKKMETNYQ RFTIDKYLKR YEKAIGHLSK bmy_22418T0/1-1098 VLMVAEKSQK DPKEYLPFLN TLKKMETNYQ RFTIDKYLKR YEKAIGHLSK ENSBTAP00000006570/1-1191 VLMVAEKSQK DPKEYLPFLN TLKKMEMNYQ RFTIDKHLKR YEKAIGHLSK 1001 1050 BACU018361/1-1286 CGPEYFPECL NLIKDKNLYN EALKLYPPNS QQYKDISIAY GEHLLQEHLC ENSP00000363779/1-1332 CGPEYFPECL NLIKDKNLYN EALKLYSPSS QQYQDISIAY GEHLMQEHMY bmy_22418T0/1-1098 CGPEYFPECL NLIKDKNLYN EALKLYPPNS QQYKDISIAY GEHLLQEHLC ENSBTAP00000006570/1-1191 CGPEYFPECL NLIKDKNLYN EALKLYPPNS QQYKDISIAY GEHLLQEHLH 1051 1100 BACU018361/1-1286 EPAGLVFARC GAHEKALSAF LACGSWQQAL CVAAQLHLTK DQLAGLGRR- ENSP00000363779/1-1332 EPAGLMFARC GAHEKALSAF LTCGNWKQAL CVAAQLNFTK DQLVGLGRTL bmy_22418T0/1-1098 EPAGLVFARC GAHEKALNAF LACGSWQQAL CVAAQLHLTK DQLAGLGRTL ENSBTAP00000006570/1-1191 EPAGLVFARC GAHEKALSAF LACGSWQQAL CAAAQLHLTA EQLAGLGRTL 1101 1150 BACU018361/1-1286 --KLAEQRKH GDAATVLEQY AQDYEEAVLL LLEGAAWEEA LRLVHKYNRP ENSP00000363779/1-1332 AGKLVEQRKH IDAAMVLEEC AQDYEEAVLL LLEGAAWEEA LRLVYKYNRL bmy_22418T0/1-1098 AGKHAIRFSQ ITSLMAL--- ---------- CLXGFVWQ-- ---------- ENSBTAP00000006570/1-1191 AGKLVEQRKH SDAATVLEQY AQDHEEAVLV LLEGAAWEEA LRLVHKYNRP 1151 1200 BACU018361/1-1286 DIIETNVKPS ILEAQKNYMA FLDSQTATFS RHKARLLVVR ELKEQAQQVH ENSP00000363779/1-1332 DIIETNVKPS ILEAQKNYMA FLDSQTATFS RHKKRLLVVR ELKEQAQQAG bmy_22418T0/1-1098 ---------- ---------- --------FC RHXS------ ---------- ENSBTAP00000006570/1-1191 DIIETNIKPS ILEGEKNYMA FLDSQTATFS RHKKRLLVVR ELKEQAQPVS 1201 1250 BACU018361/1-1286 LDDETPHGQE SDLFSETSSV MSSSDMSGKY SHSNSRISAR SSKNRRKAER ENSP00000363779/1-1332 LDDEVPHGQE SDLFSETSSV VSGSEMSGKY SHSNSRISAR SSKNRRKAER bmy_22418T0/1-1098 -GGSTPW--- ------CTVM CTGGG----- ---------- ---------- ENSBTAP00000006570/1-1191 LDDEAPHGPE SDLFSETSSV MSGSNLSGRY SHSNSRISA- ---------- 1251 1300 BACU018361/1-1286 KKHSLKEGSP LEDLALLEAL SEVVQGTEKL KDEIYHILKI LFLFEFDEQG ENSP00000363779/1-1332 KKHSLKEGSP LEDLALLEAL SEVVQNTENL KDEVYHILKV LFLFEFDEQG bmy_22418T0/1-1098 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006570/1-1191 ---------- ---------- ---------- ---------- ---------- 1301 1350 BACU018361/1-1286 RELQKAFEDT LQLMERSIPE IWALTPQQSS ATPVSFP--- ---------- ENSP00000363779/1-1332 RELQKAFEDT LQLMERSLPE IWTLTYQQNS ATPVLGPNST ANSIMASYQQ bmy_22418T0/1-1098 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006570/1-1191 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU018361/1-1286 ---------- ---------- ---------- ENSP00000363779/1-1332 QKTSVPVLDA ELFIPPKINR RTQWKLSLLD bmy_22418T0/1-1098 ---------- ---------- ---------- ENSBTAP00000006570/1-1191 ---------- ---------- ----------