KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:29:58 2014 Check: 00 ..
Name: ENSTTRP00000013862/1-968 Len: 1209 Check: 4977 Weight: 1.00
Name: bmy_08081T0/1-930 Len: 1209 Check: 5772 Weight: 1.00
Name: BACU006810/1-1084 Len: 1209 Check: 1503 Weight: 1.00
Name: ENSP00000265388/1-923 Len: 1209 Check: 7549 Weight: 1.00
Name: ENSBTAP00000006573/1-923 Len: 1209 Check: 7332 Weight: 1.00
//
1 50
ENSTTRP00000013862/1-968 ---------- ---------- ---------- ---------- ----------
bmy_08081T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU006810/1-1084 MMRALGLFME RGPGVWIQQH GTRAEIHDLY SPSYSPSPSH QFEFALQVKL
ENSP00000265388/1-923 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000006573/1-923 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000013862/1-968 ---------- ---------- ---------- ---------- ----------
bmy_08081T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU006810/1-1084 GGNLATTEGS SELKNQTKEG DILSTTVDTP QMVELMRLVH GGPKGVYVEE
ENSP00000265388/1-923 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000006573/1-923 ---------- ---------- ---------- ---------- ----------
101 150
ENSTTRP00000013862/1-968 ---------- ---------- ---------- ---------- ----------
bmy_08081T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU006810/1-1084 WRSRKGEERP RIHCQGEESC TGGNFHGEPL CPGNGQRGDG ASQGAAVADK
ENSP00000265388/1-923 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000006573/1-923 ---------- ---------- ---------- ---------- ----------
151 200
ENSTTRP00000013862/1-968 ---------- ---------- --------ME GAKPTLQLVY QAVQALYHDP
bmy_08081T0/1-930 ---------- ---------- --------ME GAKPTLQLVY QAVQALYHDP
BACU006810/1-1084 VRKREGRAAG EASGENTGAI AAATTATTME GAKPTLQLVY QAVQALYHDP
ENSP00000265388/1-923 ---------- ---------- --------ME GAKPTLQLVY QAVQALYHDP
ENSBTAP00000006573/1-923 ---------- ---------- --------ME GAKPTLQLVY QAVQALYHDP
201 250
ENSTTRP00000013862/1-968 DPSGKERASF WLGELQRS-- ---------- ---------- ----------
bmy_08081T0/1-930 DPSGKERASF WLGELQRSEN IELLLIAKAK YIFKTKQNQG SNWVVWHKRC
BACU006810/1-1084 DPSGKERASF WLGELQRS-- ---------- ---------- ----------
ENSP00000265388/1-923 DPSGKERASF WLGELQRS-- ---------- ---------- ----------
ENSBTAP00000006573/1-923 DPSGKERASF WLGELQRS-- ---------- ---------- ----------
251 300
ENSTTRP00000013862/1-968 ---------- ------VHAW EISDQLLQIR QDVESCYFAA QTMKMKIQTS
bmy_08081T0/1-930 LEKQFLRLFF CLIYFQVHAW EISDQLLQIR QDVESCYFAA QTMKMKIQTS
BACU006810/1-1084 ---------- ------VHAW EISDQLLQIR QDVESCYFAA QTMKMKIQTS
ENSP00000265388/1-923 ---------- ------VHAW EISDQLLQIR QDVESCYFAA QTMKMKIQTS
ENSBTAP00000006573/1-923 ---------- ------VHAW EISDQLLQIR QDVESCYFAA QTMKMKIQTS
301 350
ENSTTRP00000013862/1-968 FYELPTDSHA SLRDSLLTHI QNLKDLSPVI VTQLALAIAD LALQMPSWKG
bmy_08081T0/1-930 FYELPTDSHA SLRDSLLTHI QNLKDLSPVI VTQLALAIAD LALQMPSWKG
BACU006810/1-1084 FYELPTDSHA SLRDSLLTHI QNLKDLSPVI VTQLALAIAD LALQMPSWKG
ENSP00000265388/1-923 FYELPTDSHA SLRDSLLTHI QNLKDLSPVI VTQLALAIAD LALQMPSWKG
ENSBTAP00000006573/1-923 FYELPTDSHA SLRDSLLTHI QNLKDLSPVI VTQLALAIAD LALQMPSWKG
351 400
ENSTTRP00000013862/1-968 CVQTLVEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_08081T0/1-930 CVQTLVEKYS NDVTSLPFLL EILTVLPEEV HSRSLRIGAN RRTEIIEDLA
BACU006810/1-1084 CVQTLVEKYS NDVTSLPFLL EILTVLPEEV HSRSLRIGAN RRTEIIEDLA
ENSP00000265388/1-923 CVQTLVEKYS NDVTSLPFLL EILTVLPEEV HSRSLRIGAN RRTEIIEDLA
ENSBTAP00000006573/1-923 CVQTLVEKYS NDVTSLPFLL EILTVLPEEV HSRSLRIGAN RRTEIIEDLA
401 450
ENSTTRP00000013862/1-968 XXXXXXXXXX MTCVEKAGTD EKMLMKVFRC LGSWFNLGVL DSNFMANNKL
bmy_08081T0/1-930 FYSSTVVSLL MTCVEKAGTE EKMLMKVFRC LGSWFNLGVL DSNFMANNKL
BACU006810/1-1084 FYSSTVVSLL MTCVEKAGTE EKMLMKVFRC LGSWFNLGVL DSNFMANNKL
ENSP00000265388/1-923 FYSSTVVSLL MTCVEKAGTD EKMLMKVFRC LGSWFNLGVL DSNFMANNKL
ENSBTAP00000006573/1-923 FYSSTVVSLL MTCVEKAGTD EKMLMKVFRC LGSWFNLGVL DSNFMANNKL
451 500
ENSTTRP00000013862/1-968 LALLFEVL-- ---------- ---QQDKTSS NLHEAASDCV CSALYAIENV
bmy_08081T0/1-930 LALLFEVLLN DQTSYFPTPA TSQQQDKTSS NLHEAASDCV CSALYAIENV
BACU006810/1-1084 LALLFEVL-- ---------- ---QQDKTSS NLHEAASDCV CSALYAIENV
ENSP00000265388/1-923 LALLFEVL-- ---------- ---QQDKTSS NLHEAASDCV CSALYAIENV
ENSBTAP00000006573/1-923 LALLFEVL-- ---------- ---QQDKTSS NLHEAASDCV CSALYAIENV
501 550
ENSTTRP00000013862/1-968 ETNLPLAMQL FQGVLTLETA YHMAVAREDL DKVLNYCRIF TELCETFLEK
bmy_08081T0/1-930 ETNLPLAMQL FQGVLTLETA YHMAVAREDL DKVLNYCRIF TELCETFLEK
BACU006810/1-1084 ETNLPLAMQL FQGVLTLETA YHMAVAREDL DKVLNYCRIF TELCETFLEK
ENSP00000265388/1-923 ETNLPLAMQL FQGVLTLETA YHMAVAREDL DKVLNYCRIF TELCETFLEK
ENSBTAP00000006573/1-923 ETNLALAMQL FQGVLTLETA YHMAVAREDL DKVLNYCRIF TELCETFLEK
551 600
ENSTTRP00000013862/1-968 IVCTPGQGLG DLRTLELLLI CAGHPQYEVV EISFNFWYRL GEHLYKTNDE
bmy_08081T0/1-930 IVCTPGQGLG DLRTLELLLI CAGHPQYEVV EISFNFWYRL GEHLYKTNDE
BACU006810/1-1084 IVCTPGQGLG DLRTLELLLI CAGHPQYEVV EISFNFWYRL GEHLYKTNDE
ENSP00000265388/1-923 IVCTPGQGLG DLRTLELLLI CAGHPQYEVV EISFNFWYRL GEHLYKTNDE
ENSBTAP00000006573/1-923 IVCTPGQGLG DLRTLELLLI CAGHPQYEVV EISFNFWYRL GEHLYKTNDE
601 650
ENSTTRP00000013862/1-968 VIHGIFKAYI QRLLHALARH CQLEPDHEGV PEETDDFGEF RMRVSDLVKD
bmy_08081T0/1-930 VIHGIFKAYI QRLLHALARH CQLEPDHEGV PEETDDFGEF RMRVSDLVKD
BACU006810/1-1084 VIHGIFKAYI QRLLHALARH CQLEPDHEGV PEETDDFGEF RMRVSDLVKD
ENSP00000265388/1-923 VIHGIFKAYI QRLLHALARH CQLEPDHEGV PEETDDFGEF RMRVSDLVKD
ENSBTAP00000006573/1-923 VIHGIFKAYI QRLLHALARH CQLEPDHEGV PEETDDFGEF RMRVSDLVKD
651 700
ENSTTRP00000013862/1-968 LIFLIGSMEC FAQLYSTLKE GNPPWEVTEA VLFIMAAIAK SVDPKKPFSN
bmy_08081T0/1-930 LIFLIGSMEC FAQLYSTLKE GNPPWEVTEA VLFIMAAIAK SVDP------
BACU006810/1-1084 LIFLIGSMEC FAQLYSTLKE GNPPWEVTEA VLFIMAAIAK SVDP------
ENSP00000265388/1-923 LIFLIGSMEC FAQLYSTLKE GNPPWEVTEA VLFIMAAIAK SVDP------
ENSBTAP00000006573/1-923 LIFLIGSMEC FAQLYSTLKE GNPPWEVTEA VLFIMAAIAK SVDP------
701 750
ENSTTRP00000013862/1-968 DLCHCSLFFS QNLTSEIGNS EYLPSKLREN NPTLVEVLEG VVRLPETVHT
bmy_08081T0/1-930 ---------- ---------- --------EN NPTLVEVLEG VVRLPETVHT
BACU006810/1-1084 ---------- ---------- --------EN NPTLVEVLEG VVRLPETVHT
ENSP00000265388/1-923 ---------- ---------- --------EN NPTLVEVLEG VVRLPETVHT
ENSBTAP00000006573/1-923 ---------- ---------- --------EN NPTLVEVLEG VVRLPETVHT
751 800
ENSTTRP00000013862/1-968 AVRYTSIELV GEMSEVVDRN PQFLDPVLGY LMKGLCEKPL ASAAAKAIHN
bmy_08081T0/1-930 AVRYTSIELV GEMSEVVDRN PQFLDPVLGY LMKGLCEKPL ASAAAKAIHN
BACU006810/1-1084 AVRYTSIELV GEMSEVVDRN PQFLDPVLGY LMKGLCEKPL ASAAAKAIHN
ENSP00000265388/1-923 AVRYTSIELV GEMSEVVDRN PQFLDPVLGY LMKGLCEKPL ASAAAKAIHN
ENSBTAP00000006573/1-923 AVRYTSIELV GEMSEVVDRN PQFLDPVLGY LMKGLCEKPL ASAAAKAIHN
801 850
ENSTTRP00000013862/1-968 ICSVCRDHMA QHFHGLLEIA RSLDSFMLSP EAAVGLLKGT ALVLARLPLD
bmy_08081T0/1-930 ICSVCRDHMA QHFHGLLEIA RSLDSFMLSP EAAVGLLK-- -------EWE
BACU006810/1-1084 ICSVCRDHMA QHFHGLLEIA RSLDSFMLSP EAAVGLLKGT ALVLARLPLD
ENSP00000265388/1-923 ICSVCRDHMA QHFNGLLEIA RSLDSFLLSP EAAVGLLKGT ALVLARLPLD
ENSBTAP00000006573/1-923 ICSVCRDHMA QHFNGLLEIA RSLDSFMLSP EAAVGLLKGT ALVLARLPLD
851 900
ENSTTRP00000013862/1-968 KITECLSELC SVQVMALKKL LSQEPSNGIS SDPTVFLDRL AVIFRHTNPI
bmy_08081T0/1-930 K--------- --KVLSLKNT L--------- ----VFFNW- -----HTNPI
BACU006810/1-1084 KITECLSELC SVQVMALKKL LSQEPSNGIS SDPTVFLDRL AVIFRHTNPI
ENSP00000265388/1-923 KITECLSELC SVQVMALKKL LSQEPSNGIS SDPTVFLDRL AVIFRHTNPI
ENSBTAP00000006573/1-923 KITECLSELC SVQVLALKKL LSQEPSNGIS SDPTVFLDRL AVIFRHTNPV
901 950
ENSTTRP00000013862/1-968 VENGQTHPCQ KVIQEIWPVL SETLNKHRAD NRIVERCCRC LRFAVRCVGK
bmy_08081T0/1-930 VENGQTHPCQ KVIQEIWPVL SETLNKHRAD NRIVERCCRC LRFAVRCVGK
BACU006810/1-1084 VENGQTHPCQ KVIQEIWPVL SETLNKHRAD NRIVERCCRC LRFAVRCVGK
ENSP00000265388/1-923 VENGQTHPCQ KVIQEIWPVL SETLNKHRAD NRIVERCCRC LRFAVRCVGK
ENSBTAP00000006573/1-923 VENGQTHPCQ KVIQEIWPIL SETLNKHRAD NRIVERCCRC LRFAVRCVGK
951 1000
ENSTTRP00000013862/1-968 GSAALLQPLV TQMVNVYHVH QHSCFLYLGS ILVDEYGMEE GCRQGLLDML
bmy_08081T0/1-930 GSAALLQPLV TQMVNVYHVH QHSCFLYLGS ILVDEYGMEE GCRQGLLDML
BACU006810/1-1084 GSAALLQPLV TQMVNVYHVH QHSCFLYLGS ILVDEYGMEE GCRQGLLDML
ENSP00000265388/1-923 GSAALLQPLV TQMVNVYHVH QHSCFLYLGS ILVDEYGMEE GCRQGLLDML
ENSBTAP00000006573/1-923 GSAALLQPLV TQMVNVYQVH QHSCFLYLGS ILVDEYGMEE GCRQGLLDML
1001 1050
ENSTTRP00000013862/1-968 QALCMPTFQL LEQQNGLQNH PDTVDDLFRL ATRFIQRSPV TLLRSQVVIP
bmy_08081T0/1-930 QALCMPTFQL LEQQNGLQNH PDTVDDLFRL ATRFIQRSPV TLLRSQVVIP
BACU006810/1-1084 QALCMPTFQL LEQQNGLQNH PDTVDDLFRL ATRFIQRSPV TLLRSQVVIP
ENSP00000265388/1-923 QALCIPTFQL LEQQNGLQNH PDTVDDLFRL ATRFIQRSPV TLLRSQVVIP
ENSBTAP00000006573/1-923 QALCIPTFQL LEQQNGLQNH PDTVDDLFRL ATRFIQRSPV TLLRSQVVIP
1051 1100
ENSTTRP00000013862/1-968 ILQWAIASTT LDHRDANCSV MRFLRDLIHT GVANDXXXXX XXXXXXXXXX
bmy_08081T0/1-930 ILQWAIASTT LDHRDANCSV MRFLRDLIHT GVANDHEEDF ELRKELIGQV
BACU006810/1-1084 ILQWAIASTT LDHRDANCSV MRFLRDLIHT GVANDHEEDF ELRKELIGQV
ENSP00000265388/1-923 ILQWAIASTT LDHRDANCSV MRFLRDLIHT GVANDHEEDF ELRKELIGQV
ENSBTAP00000006573/1-923 ILQWAIASTT LDHRDANCSV MRFLRDLIHT GVANDHEEDF EVRKELIGQV
1101 1150
ENSTTRP00000013862/1-968 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XTFCRWLENS
bmy_08081T0/1-930 MNQLGQQLVS QLLHTCCFCL PPYTLPDVAE VLWEIMQVDR PTFCRWLENS
BACU006810/1-1084 MNQLGQQLVS QLLHTCCFCL PPYTLPDVAE VLWEIMQVDR PTFCRWLENS
ENSP00000265388/1-923 MNQLGQQLVS QLLHTCCFCL PPYTLPDVAE VLWEIMQVDR PTFCRWLENS
ENSBTAP00000006573/1-923 MNQLGQQLVS QLLHTCCFCL PPYTLPDVAE VLWEIMQVDR PTFCRWLENS
1151 1200
ENSTTRP00000013862/1-968 LKGLPKETTV GAVTVTHKQL TDFHKQVTSA EECKQVCWAL RDFQVVSIAH
bmy_08081T0/1-930 LKGLPKETTV GAVTVTHKQL TDFHKQVTR- ---------- ------YF--
BACU006810/1-1084 LKGLPKETTV GAVTVTHKQL TDFHKQVTR- ---------- ------YL--
ENSP00000265388/1-923 LKGLPKETTV GAVTVTHKQL TDFHKQVTSA EECKQVCWAL RDFTRLFR--
ENSBTAP00000006573/1-923 LKGLPKETTG GAVTVTHKQL TDFHKQVTSA EECKQVCWAL RDFTRLFR--
1201 1250
ENSTTRP00000013862/1-968 TPALCLSPR
bmy_08081T0/1-930 ---------
BACU006810/1-1084 ---------
ENSP00000265388/1-923 ---------
ENSBTAP00000006573/1-923 ---------