KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:02 2014 Check: 00 .. Name: ENSP00000378792/1-603 Len: 670 Check: 9261 Weight: 1.00 Name: ENSBTAP00000006604/1-585 Len: 670 Check: 6572 Weight: 1.00 Name: bmy_19857T0/1-664 Len: 670 Check: 1947 Weight: 1.00 Name: BACU009363/1-587 Len: 670 Check: 629 Weight: 1.00 Name: ENSTTRP00000000448/1-600 Len: 670 Check: 3753 Weight: 1.00 // 1 50 ENSP00000378792/1-603 --------MS PGLLTTRKEA LMAFRDVAVA FTQKEW---- ---KLL---- ENSBTAP00000006604/1-585 ---------- ---------A LMAFRDVAVA FTQKEW---- ---KLL---- bmy_19857T0/1-664 MVMEAPLGPD VPDFGGRTGL GQTLRLALIG VGRTTWVSGI GARRLLGELE BACU009363/1-587 ---------- ---------- -MAFKDVAVA FTQKEW---- ---KLL---- ENSTTRP00000000448/1-600 --------MA PGLLTTRDEA LMAFKDVAVA FTQKEW---- ---KLL---- 51 100 ENSP00000378792/1-603 -------SSA QR--TLYREV MLENYSHLVS LGI---AFSK PKLIEQLEQG ENSBTAP00000006604/1-585 -------SPA QR--TLYRDV MLENYSHMVS LGI---AFPK PKLIIQLEQG bmy_19857T0/1-664 GPGGSQTSPG LRGASLCPDL RLQKLCGSSG AGALPGAWGG ASGVQPTGQG BACU009363/1-587 -------SPA QR--TLYRDV MLENYSHMVS LGI---AFPK PKLITQLEQG ENSTTRP00000000448/1-600 -------SPA QR--TLYRDV MLENYSHMVS LGI---AFPK PKLIIQLEQG 101 150 ENSP00000378792/1-603 DEPWRE---- ---------- ---ENEHLLD ---------- ------LCP- ENSBTAP00000006604/1-585 DEPWRE---- ---------- ---ESECLLD ---------- ------LCAA bmy_19857T0/1-664 REEWVELPFL NQNSSHNWSK GMSPGERRLK VFWTFFQVPV VILTDTFSPA BACU009363/1-587 DEPWRE---- ---------- ---ESESLLD ---------- ------LCPA ENSTTRP00000000448/1-600 DEPWRE---- ---------- ---ESESLLD ---------- ------LCP- 151 200 ENSP00000378792/1-603 EPRTEFQPSF PHLVAFSSSQ LLRQYALSGH PTQIFPSSSA GGDFQLEAPR ENSBTAP00000006604/1-585 EGRKEFQPCL SCPVTFSSPQ ILHHYMLCGH ALQIFPGSSA ESHFLLDAPS bmy_19857T0/1-664 EPGTEFQPHL SCPVSFSSPQ FLHQYVLCGH SPQIFPGSSA GSHFLLEAPS BACU009363/1-587 EPGTEFQPHL SCPVSFSSPQ FLHQYVLCGH SPQIFPGSSA GSHFLLEAPS ENSTTRP00000000448/1-600 EPRTEFQPHL SCPVSFSSPQ CLHQYVLCGH FPQIFPGSSA GSHFLLEAPS 201 250 ENSP00000378792/1-603 CSSEKGESGE TEGPDSSL-R KRPSRISRTF FSPHQGDPVE WVEGNREGGT ENSBTAP00000006604/1-585 CLNEKAKDGE REGSGTVFGR LQLSGTSRAF FSSSQGQPVD -QGGSSSGRI bmy_19857T0/1-664 CSSDKAEDGE REGSCTVFGR LRLSGTSRAF FSPSQGQPVD -QEGNSGGGI BACU009363/1-587 CSSDKAEDGE REGSCTVFGR LQLSGTSRAF FSPPQGQPVD -QEGNSGGGI ENSTTRP00000000448/1-600 CSSNKAEDGE REGSCTVFGR LRLSGTSRAF FSPSQGQPVD -QEGNSGGGI 251 300 ENSP00000378792/1-603 DLRLAQRMSL GGSDTMLKGA DTSESGAVIR GNYRLGLSKK SSLFSHQKHH ENSBTAP00000006604/1-585 D----QGMIS DEADAVLTET NISESGAVIC ENYRLGFSRK SSLFSLQKHH bmy_19857T0/1-664 D----QEVIP EEADAMLTGA DISESGAVIC EKYRLGLSTK SSLFSPQKLH BACU009363/1-587 D----EEMIP EEADAMLTGA DISESGAVIC EKYRLGLSTK SSLFSPQKLH ENSTTRP00000000448/1-600 D----QGVIP EETDAMLTGA DISESGTVIC EKYRLGLSTK SSLFSLQKLH 301 350 ENSP00000378792/1-603 VCPECGRGFC QRSDLIKHQR THTGEKPYLC PECGRRFSQK ASLSIHQRKH ENSBTAP00000006604/1-585 VCPECGRNFC QKSDLVKHQR THSGEKPFSC RECGRGFGRR SSLTVHQRKH bmy_19857T0/1-664 VCPECGRSFY QRSDLIKHQR THTGEKPYSC RECGRGFGRK SSLTIHQRKH BACU009363/1-587 VCPECGRSFY QRSDFIKHQR THTGEKPYSC RECGRGFGRK SSLTIHQRKH ENSTTRP00000000448/1-600 VCPECGRSFY QRSDLIKHQR THTGEKPYSC RECGRGFGRK SSLTIHQRKH 351 400 ENSP00000378792/1-603 SGEKPYVCRE CGRHFRYTSS LTNHKRIHSG ERPFVCQECG RGFRQKIALL ENSBTAP00000006604/1-585 SGEKPYVCRE CGRHFRYTSS LTNHKRIHSG ERPFVCQQCG RGFRQKIALI bmy_19857T0/1-664 SGEKPYMCRE CGRHFRYTSS LTNHKRIHSG ERPFVCQECG RGFRQKIALI BACU009363/1-587 SGEKPYMCRE CGRHFRYTSS LTNHKRIHSG ERPFVCQECG RGFRQKIALI ENSTTRP00000000448/1-600 SGEKPYVCRE CGRHFRYTSS LTNHKRIHSG ERPFVCQECG RGFRQKIALI 401 450 ENSP00000378792/1-603 LHQRTHLEEK PFVCPECGRG FCQKASLLQH QSSHTGERPF LCLECGRSFR ENSBTAP00000006604/1-585 LHQRTHLEEK PFVCPECGRG FCQKASLLQH RSSHSGERPF VCLECGRGFR bmy_19857T0/1-664 LHQRTHLEEK PFVCPECGRG FCQKASLLQH RSSHSAERPF LCLECGRGFR BACU009363/1-587 LHQRTHLEEK PFVCPECGRG FCQKASLLQH RSSHSAERPF LCLECGRGFR ENSTTRP00000000448/1-600 LHQRTHLEEK PFVCPECGRG FCQKASLLQH RSSHSAERPF LCLECGRGFR 451 500 ENSP00000378792/1-603 QQSLLLSHQV THSGEKPYVC AECGHSFRQK VTLIRHQRTH TGEKPYLCPQ ENSBTAP00000006604/1-585 QQSLLLSHQV THSGEKPYVC AECGHSFRQK VTLIRHQRTH TGEKPYLCSE bmy_19857T0/1-664 QQSLLLSHQV THSGEKPYVC AECGHSFRQK VTLIRHQRTH TGEKPYMCSE BACU009363/1-587 QQSLLLSHQV THSGEKPYVC AECGHSFRQK VTLIRHQRTH TGEKPYMCSE ENSTTRP00000000448/1-600 QQSLLLSHQV THSGEKPYVC AECGHSFRQK VTLIRHQRTH TGEKPYMCSE 501 550 ENSP00000378792/1-603 CGRGFSQKVT LIGHQRTHTG EKPYLCPDCG RGFGQKVTLI RHQRTHTGEK ENSBTAP00000006604/1-585 CGRGFSQKVS LMGHQRTHTG EKPYVCSECG RGFGQKVTLI RHQRTHTGEK bmy_19857T0/1-664 CGRGFSQKVS LMGHQRTHTG EKPYVCPECG RGFGQKVTLI RHQRTHTGEK BACU009363/1-587 CGRGFSQKVS LMGHQRTHTG EKPYVCPECG RGFGQKVTLI RHQRTHTGEK ENSTTRP00000000448/1-600 CGRGFSQKVS LMGHQRTHTG EKPYVCPECG RGFGQKVTLI RHQRTHTGEK 551 600 ENSP00000378792/1-603 PYLCPKCGRA FGFKSLLTRH QRTHSEEELY VDRVCGQGLG QKSHLISDQR ENSBTAP00000006604/1-585 PFLCPECGRT FGFKSLLTRH KRIHSGEEAD VYRVCEQRLG LKIQLTSDQR bmy_19857T0/1-664 PYLCSECGRT FGFKSLLTRH QRTHLGEAAD VYRVCEQRLG QKTHLTSDQR BACU009363/1-587 PYLCSECGRT FGFKSLLTRH QRTHSGEEAD VYRVCEQRLG QKTHLTSDQR ENSTTRP00000000448/1-600 PYLCSECGRT FGFKSLLTRH QRTHSGEEAD VYGVCEQRLG QKTHLTSDQR 601 650 ENSP00000378792/1-603 THSGEKPCIC DECGRGFGFK SALIRHQRTH SGEKPYVCRE CGRGFSQKSH ENSBTAP00000006604/1-585 THSGEKPCVC DECGRGFGFK SALIRHQRTH SGEKPYVCRD CGRGFSQKSH bmy_19857T0/1-664 TYSGEKPCVC DECGRGFGFK SALIRHQRTH SGEKPYVCRE CGRGFSQKSH BACU009363/1-587 TYSGEKPCVC DECGRGFGFK SALIRHQRTH SGEKPYVCRE CGRGFSQKSH ENSTTRP00000000448/1-600 TYSGEKPCVC DECGRGFGFK SALIRHQRTH SGEKPYVCRE CGRGFSQKSH 651 700 ENSP00000378792/1-603 LHRHRRTKSG HQLLPQEVF- ENSBTAP00000006604/1-585 LHRHRKTKSG HHLLP----- bmy_19857T0/1-664 LHRHKRTKSG HH-LPQELFS BACU009363/1-587 LHRHKRTKSG HH-LPQELFA ENSTTRP00000000448/1-600 LHRHKRTKSG HHLLPQELFS