KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:03 2014 Check: 00 .. Name: ENSP00000333680/1-270 Len: 299 Check: 8844 Weight: 1.00 Name: ENSTTRP00000004992/1-258 Len: 299 Check: 7228 Weight: 1.00 Name: ENSBTAP00000006606/1-250 Len: 299 Check: 2590 Weight: 1.00 Name: bmy_01032T0/1-169 Len: 299 Check: 8896 Weight: 1.00 Name: BACU013433/1-293 Len: 299 Check: 2398 Weight: 1.00 // 1 50 ENSP00000333680/1-270 MENQPVRWRA LPG-LPR--- ---------- ---------- -----PPGLP ENSTTRP00000004992/1-258 MESRPPWWRA PPGHAPR--- ---------- ---------- -----LLGLF ENSBTAP00000006606/1-250 ---------- ----APV--- ---------- ---------- -----LMGTW bmy_01032T0/1-169 ---------- ---------- ---------- ---------- ---------- BACU013433/1-293 -MTELTWGRS PLRASSHVNR VEREGARSPA HQLRVVSDLC FYPTWLLDLW 51 100 ENSP00000333680/1-270 AAPWLLLGVL LLPGTLRLAG GQSVTHTGLP IMASLANTAI SFSCRITYPY ENSTTRP00000004992/1-258 LLPWTL---- ------QLAG GQSVTHTGLP IVVSLANKAV SFGCRITYPY ENSBTAP00000006606/1-250 GLKLSLCPFP ------SPAE ERSVTHTGLP ILVSLANRAV SFSCSITYPY bmy_01032T0/1-169 ---------- ---------- GQSVTHTGLP IVVSLANKAV SFSCRITYPY BACU013433/1-293 EREWLEAWGL GS----SSPG GQSVTHTGLP IVVSLANKAV SFSCRITYPY 101 150 ENSP00000333680/1-270 TPQFKVFTVS YFHEDLQGQR SPKKPTNCHP GLGTENQSHT LDCQVTLVLP ENSTTRP00000004992/1-258 TPTFKHFTVS YFYVDLLGRT SSEEKTSCKP GPGRENQTHT EECQITPKLP ENSBTAP00000006606/1-250 TPKFKDFRVS YFHVDLQGQT SSEKKISCQP GPGSENQTHT TACPIFLKLP bmy_01032T0/1-169 TPKFKDFTVS YFHVDLQGQK SSEEKTSCKP GPGRENQTNT KECQITPNLP BACU013433/1-293 TPKFKDFTVS YFHVDLQGQR SSEEKTSCKP GPGRENQTNT KECQITPKLP 151 200 ENSP00000333680/1-270 GASATGTYYC SVHWPHSTVR GSGTFILVRD AGYREPPQSP QKLLLFGFTG ENSTTRP00000004992/1-258 DAAATGTYYC SVRWPGSRVT GNGTFILVRD TGYREPPQGL QDLLLLCFIG ENSBTAP00000006606/1-250 NSSATGTYYC SVHWQDSRMI GEGTFILVRD TGYQEPPQSP QKLLLFCFVG bmy_01032T0/1-169 DASATGTYYC SVRWPDSMVT GNGTFILVRG TGYREPRQGP QVLLLFCFIG BACU013433/1-293 GVSATGTYYC SVRWPDSTVT GNGTFILVRG TGYREPPQGP QKLLLVCFIG 201 250 ENSP00000333680/1-270 LLSVLSVVGT ALLLWNKKRM RGPGKDPTRK CPDPRSASSP KQHPSESVYT ENSTTRP00000004992/1-258 LLXXXXXXXX XXXXXXXRQT QAPRKHTAQK --GPSAASSR EQPPPESVYT ENSBTAP00000006606/1-250 ILAVLSILAT ALLLWKKRQI WALWKHAAKR CPGPSATSSP GQPPSESVYT bmy_01032T0/1-169 ILTVLSILAT ALLLWKKVGA AGTR----QR CPHPT----- ---------- BACU013433/1-293 ILTVLSILAT ALLLWKKRQM QAPRKHTAQK CPGPSAASSR EQPPSESIYT 251 300 ENSP00000333680/1-270 ALQRRETEVY ACIENEDGSS PTAKQSPLSQ ERPHRFEDDG ELNLVYENL ENSTTRP00000004992/1-258 DLQRRETEVY DCIQSEASSP PSN-QDLLSQ EKQHGSEGDG EFNLVYENL ENSBTAP00000006606/1-250 DLQRRETEVY DCIQSEAGSP PTS-QGLLSQ EKQHKFEGDG EFNLVYENL bmy_01032T0/1-169 ---------- ---HCGLGLP P--------- ---------- --------- BACU013433/1-293 DLQRRETEVY DCIQSEASSP PSP-QDLLSQ EKQHRFEGDS EFNLVYENL