KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:04 2014 Check: 00 .. Name: BACU013227/1-530 Len: 852 Check: 3462 Weight: 1.00 Name: ENSP00000335082/1-838 Len: 852 Check: 1376 Weight: 1.00 Name: ENSBTAP00000006615/1-840 Len: 852 Check: 4731 Weight: 1.00 Name: bmy_08351T0/1-770 Len: 852 Check: 3471 Weight: 1.00 Name: ENSTTRP00000005193/1-837 Len: 852 Check: 7555 Weight: 1.00 // 1 50 BACU013227/1-530 MNIDVEFHIR HNYPWSKLPA NVRQSLGNSQ REYEKQVVLY SIRNQLRYRN ENSP00000335082/1-838 MNIDVEFHIR HNYPWNKLPA NVRQSLGNSQ REYEKQVVLY SIRNQLRYRN ENSBTAP00000006615/1-840 MNIDVEFHIR HNYPWSKLPA NVRQSLGNSQ REYEKQVVLY SIRNQLRYRN bmy_08351T0/1-770 MNIDVEFHIR HNYPWSKLPA NVRQ------ ---------- ---------- ENSTTRP00000005193/1-837 MNIDV-FHIR HNYPWSKLPA NVRQSLGNSQ REYEKQVVLY SIRNQLRYRN 51 100 BACU013227/1-530 NLVKHVKKDE RKYYEELLKY SRDHLMLYPY HLSDIMVKGL RITPFLYYTG ENSP00000335082/1-838 NLVKHVKKDE RRYYEELLKY SRDHLMLYPY HLSDIMVKGL RITPFSYYTG ENSBTAP00000006615/1-840 NLVKHVKKDE RKYYEELLKY SRDHLMLYPY HLSDIMVKGL RITPFSYYTG bmy_08351T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005193/1-837 NLVKHVKKDE RKYYEELLKY SRDHLMLYPY HLSDIMVKGL RITPFLYYTG 101 150 BACU013227/1-530 IME------- ---------- ---------- ---------- -----KFFRR ENSP00000335082/1-838 IMEDIMNSEK SYDSLPNFTA ADCLRLLGIG RNQYIDLMNQ CRSSKKFFRR ENSBTAP00000006615/1-840 IMEDIMNSEK SYDSLPNFTA ADCLRLLGIG RNQYIDLMNQ CRSSKKFFRR bmy_08351T0/1-770 ---DIMNSEK SYDSLPNFTA ADCLRLLGIG RNQYIDLMNQ CRSSKKFFRR ENSTTRP00000005193/1-837 IMEDIMNSEK SYDSLPNFTA ADCLRLLGIG RNQYIDLMNQ CRSSKKFFRR 151 200 BACU013227/1-530 KTARDLLPVK PVEIAIEAWW VVQAAYITED DIKICTLPEK CAIDKIIDAG ENSP00000335082/1-838 KTARDLLPIK PVEIAIEAWW VVQAGYITED DIKICTLPEK CAVDKIIDSG ENSBTAP00000006615/1-840 KTARDLLPVK PVEIAIEAWW VVQAAYITED DIKICTLPEK CAIDKIIDAG bmy_08351T0/1-770 KTARDLLPVK PVEIAIEAWW VVQAAYITED DIKICTLPEK CAIDKIIDAG ENSTTRP00000005193/1-837 KTARDLLPVK PVEIAIEAWW VVQAAYITED DIKICTLPEK CAIDKIIDAG 201 250 BACU013227/1-530 PQLSGSLDYN VVHSLYNKGF IYLDVPISDD SCIA------ ---------- ENSP00000335082/1-838 PQLSGSLDYN VVHSLYNKGF IYLDVPISDD SCIAVPPLEG FVMNRVQGDY ENSBTAP00000006615/1-840 PQLSGSLDYN VVHSLYNKGF VYLDVPISDD SCIAVPPLEG FVMNRVQGDY bmy_08351T0/1-770 PQLSGSLDYN VVHSLYNKGF IYLDVPISDD SCIAVPPLEG FVMNRVQGDY ENSTTRP00000005193/1-837 PQLSGSLDYN VVHSLYNKGF IYLDVPISDD SCIAVPPLEG FVMNRVQGDY 251 300 BACU013227/1-530 ---------- ---------- ---------- ---------- ---------- ENSP00000335082/1-838 FETLLYKIFV SIDEHTNVAE LANVLEIDLS LVKNAVSMYC RLGFAHKKGQ ENSBTAP00000006615/1-840 FETLLYKIFV SIDEHTNVAE LANVLEIDLS LVKNAVSMYC RLGFAHKKGQ bmy_08351T0/1-770 FETLLYKIFV SIDEHTNVAE LANVLEIDLS LVKNAVSMYC RLGFAHKKGQ ENSTTRP00000005193/1-837 FETLLYKIFV SIDEHTNVAE LANVLEIDLS LVKNAVSMYC RLGFAHKKGQ 301 350 BACU013227/1-530 ---------- ---------- ---------- ---------- ---------- ENSP00000335082/1-838 VINLDQLHSS WKNVPSVNRL --KSTLDPQK MLLSWDGGES RSPVQEASSA ENSBTAP00000006615/1-840 VINLDQLHSS WKNVPSVNRL NNRSTLDPQK MLLSWDGGES RSPVQEASSA bmy_08351T0/1-770 VINLDQLHSS WKNVPSVNRL --KNTLDPQK MLLSWDGGES RSPVQEASSA ENSTTRP00000005193/1-837 VINLDQLHSS WKNVPSVNRL --KSTLDPQK MLLSWDGGES RSPVQEASSA 351 400 BACU013227/1-530 ---------- --DTASISSL SLSTGYTKRI AFLFDSTLTA FLMMGNLSPN ENSP00000335082/1-838 TDTDTNSQED PADTASVSSL SLSTGHTKRI AFLFDSTLTA FLMMGNLSPN ENSBTAP00000006615/1-840 TDTDTNSQED PADTASINSL NLSTGYTKRI AFLFDSTLTA FLMMGNLSPN bmy_08351T0/1-770 TDTDTNSQED P-DTASISSL SLSTGYTKRI AFLFDSTLTA FLMMGNLSPN ENSTTRP00000005193/1-837 TDTDTNSQED PADTASISSL SLSTGYTKRI AFLFDSTLTA FLMMGNLSPN 401 450 BACU013227/1-530 LKSHAVTMFE VGKLSDESLD SFLIELEK-- ---------- ---------- ENSP00000335082/1-838 LKSHAVTMFE VGKLSDESLD SFLIELEKVQ STGEGEAQRY FDHALTLRNT ENSBTAP00000006615/1-840 LKSHAVTMFE VGKLSDESLD SFLIELEKVQ STGEGEAQRY FDHALTLRNT bmy_08351T0/1-770 LKSHAVTMFE VGKLSDESLD SFLIELEKVQ STGEGEAQRY FDHALTLRNT ENSTTRP00000005193/1-837 LKSHAVTMFE VGKLSDESLD SFLIELEKVQ STGEGEAQRY FDHALTLRNT 451 500 BACU013227/1-530 ---------- ---------- ---------- ---------- ---------- ENSP00000335082/1-838 ILFLRHNKDL VAQTAQPDQP NY-------- ----GFPLDL LRCESLLGLD ENSBTAP00000006615/1-840 ILFLRHNKDL VAQTAQPDQP SY-------- ----GFPLDL LRCESLLGLD bmy_08351T0/1-770 ILFLRHNKDL VAQTAQPDQP NYVFHSMYVV DHNSGFPLDL LRCESLLGLD ENSTTRP00000005193/1-837 ILFLRHNKDL VAQTAQPDQP NY-------- ----GFPLDL LRCESLLGLD 501 550 BACU013227/1-530 ---------- ---------- ---------- ----HIGPAI PEVSSVWFKL ENSP00000335082/1-838 PATCSRVLNK NYTLLVSMAP LTNEIRPVSS CTPQHIGPAI PEVSSVWFKL ENSBTAP00000006615/1-840 PATCSRVLNK NYTLLVSMAP LTNEIRPVSS CTPQHIGPAI PEVSSVWFKL bmy_08351T0/1-770 PATCSRVLNK NYTLLVSMAP LTNEIRPVSS CTPQHIGPAI PEVSSVWFKL ENSTTRP00000005193/1-837 PATCSRVLNK NYTLLVSMAP LTNEIRPVSS CTPQHIGPAI PEVSSVWFKL 551 600 BACU013227/1-530 YIYHITRQGP PSLLLSKGTR LRKLPDIFQG YDRLLITSWG HDPGVVPTSN ENSP00000335082/1-838 YIYHVTGQGP PSLLLSKGTR LRKLPDIFQS YDRLLITSWG HDPGVVPTSN ENSBTAP00000006615/1-840 YIYHITRQGP PSLLLSKGTR LRKLPDIFQG YDRLLITSWG HDPGVVPTSN bmy_08351T0/1-770 YIYHITRQGP PSLLLSKGTR LRKLPDIFQG YDRLLITSWG HDPGVVPTSN ENSTTRP00000005193/1-837 YIYHITRQGP PSLLLSKGTR LRKLPDIFQG YDRLLITSWG HDPGVVPTSN 601 650 BACU013227/1-530 VLTMLNDALT HSAVLIQGHG LHGIGETVHI PFPFDETELR GEFTRVNMGV ENSP00000335082/1-838 VLTMLNDALT HSAVLIQGHG LHGIGETVHV PFPFDETELQ GEFTRVNMGV ENSBTAP00000006615/1-840 VLTMLNDALT HSAVLIQGHG LHGIGETVHI PFPFDETELQ GEFTRVNMGV bmy_08351T0/1-770 VLTMLNDALT HSAVLIQGHG LHGIGETVHI PFPFDETELR GEFTRVSMGV ENSTTRP00000005193/1-837 VLTMLNDALT HSAVLIQGHG LHGIGETVHI PFPFDETELR GEFTRVNMGV 651 700 BACU013227/1-530 HRALQMLRNK VDLQHFCGYV TMLNASSQLA NRKLSDASDE RGEPDLASGS ENSP00000335082/1-838 HKALQILRNR VDLQHLCGYV TMLNASSQLA DRKLSDASDE RGEPDLASGS ENSBTAP00000006615/1-840 HKALQTLRNK VDLQHFCGYV TMLNASSQLA NRKLSDASDE RGEPDLASGS bmy_08351T0/1-770 HKALQMLRNK VDLQHFCGYV TMLNASSQLA NRKLSDASDE RGEPDLASGS ENSTTRP00000005193/1-837 HKALQMLRNK VDLQHFCGYV TMLNASSQLA NRKLSDASDE RGEPDLASGS 701 750 BACU013227/1-530 DVNGSTESFE MVIEEATIDS ATKQNSVATT EADWVPLELC FGIPLFSSEL ENSP00000335082/1-838 DVNGSTESFE MVIEEATIDS ATKQTSGATT EADWVPLELC FGIPLFSSEL ENSBTAP00000006615/1-840 DVNGSTESFE MVIEEAALDS AAKQNSVATA EADWVPLELC FGIPLFSSEL bmy_08351T0/1-770 DVNGSTESFE MVIEEATIDS ATKQNSVATT EADWVPLELC FGIPLFSSEL ENSTTRP00000005193/1-837 DVNGSTESFE MVIEEATIDS ATKQNSVATT EADWVPLELC FGIPLFSSEL 751 800 BACU013227/1-530 NQKVCRKIAT HGLCRKESV- -FIADVSKIT VQV------- ---------- ENSP00000335082/1-838 NRKVCRKIAA HGLCRKESLQ NLLHSSRKLS LQVLNFVHSF QEGASILDIH ENSBTAP00000006615/1-840 NQKVCRKIAT HGLCRKESLQ NLLHSSRKLS LQVLNFVHSF QEGASTLDVH bmy_08351T0/1-770 NQKVCRKIAT HGLCRKESLQ NLLHSSRKLS LQVLNFVHSF QEGASTLDIH ENSTTRP00000005193/1-837 NQKVCRKIAT HGLCRRESLQ NLLHSSRKLS LQVLNFVHSL QEGASTLDIH 801 850 BACU013227/1-530 -----PGMLA LGLRQSAEVV LKAESRRLRT ---------- ---------- ENSP00000335082/1-838 TEPSFSSLLS QSSCADMGVP LPAKNLIFKD GVLSEWSGRS PSSLLIANLH ENSBTAP00000006615/1-840 TEASFPSLLS QSSCADMGVP LPAKNLVFKD GILTEWSGRS PSSLLIANLH bmy_08351T0/1-770 NEASFPSLLS QSSCADLGVP LPAKNLIFKD GILTEWSGRS PSSLLIANLH ENSTTRP00000005193/1-837 TEASFPSLLS QSSCADMGVP LPAKNLIFKD GILTEWSGRS PSSLLIANLH 851 900 BACU013227/1-530 -- ENSP00000335082/1-838 LQ ENSBTAP00000006615/1-840 LQ bmy_08351T0/1-770 LQ ENSTTRP00000005193/1-837 LQ