KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:04 2014 Check: 00 .. Name: ENSP00000279392/1-556 Len: 604 Check: 2075 Weight: 1.00 Name: ENSBTAP00000006619/1-544 Len: 604 Check: 2520 Weight: 1.00 Name: ENSTTRP00000005199/1-548 Len: 604 Check: 2975 Weight: 1.00 Name: bmy_00775T0/1-585 Len: 604 Check: 4845 Weight: 1.00 Name: BACU019028/1-529 Len: 604 Check: 8845 Weight: 1.00 // 1 50 ENSP00000279392/1-556 MAREKEMQEF TRSFFRGRPD LSTLTHSIVR RRYLAHSGRS HLEPEEKQAL ENSBTAP00000006619/1-544 MARENEMQEF TRSFFQGHPD LSTLTHSIVR RRFLAHAGRD HLEPEEKQAL ENSTTRP00000005199/1-548 MARENEMQEF TRRFFQGRPD LSTLTHSIVR RRFLAHAGRD HLEPEEKQTL bmy_00775T0/1-585 MARENEMQEF TRSFFQGRPD LSTLTHSIVR RRFLAHAGRD HLEPEEKQAL BACU019028/1-529 MARENEMQEF TRSFFQGRPD LSTLTHSIVR RRFLAHAGRD HLEPEEKQAL 51 100 ENSP00000279392/1-556 KRLVEEELLK MQVDEAASRE DKLDLTKKGK RPPTPCSDPE RKRFRFNSES ENSBTAP00000006619/1-544 KRLVEEELLK MQVDEASAKQ ERLHVGKKAK RSPAPCRDPE RKRFRFNSES ENSTTRP00000005199/1-548 KRLVEEELLK MQVEEAGGRE KRLDVAKKAK RSPIPCRDPA RKRFRFNSES bmy_00775T0/1-585 KRLVEEELLK MQVDEAGGRE KRLDVAKKAK RSPIPCRDPA RKRFRFNSES BACU019028/1-529 KRLVEKELLK MQVDEAGGRE KRLDVAKKAK RSPIPCRDPA RKRFRFNSES 101 150 ENSP00000279392/1-556 ESGSEASSPD YFGPPAKNGV AAEVSPAKEE NPRRASKAVE E--SSDEERQ ENSBTAP00000006619/1-544 EPSSAASSPD RLNPSAKNGM AADVTPAEDE SPNQASKKAT E--SSDDEQQ ENSTTRP00000005199/1-548 EPSSAASSPD CFGLPAKNGM AAEVSPAEDE NPKRASKKAI EESSDEEEQQ bmy_00775T0/1-585 EPSSAASSPD CFGLPAKNGM AAEVSPAEDE NPKRASKKAI EESSDEEEQQ BACU019028/1-529 EPSSAASSPD CFGLPAKNGM AAEVSPAEDE NPKRASKKAI EESSDEEEQQ 151 200 ENSP00000279392/1-556 RDLPAQRGEE SS-------- ---------- ---------- --------EE ENSBTAP00000006619/1-544 RDLTAKIRLE KE-------- ---------- ---------- --------EE ENSTTRP00000005199/1-548 RDLTAKMGKG SS-------- ---------- ---------- --------EE bmy_00775T0/1-585 RDLTAKMGLE KEEVKGSSEE EEEGSARKSK VWKEESSEEE EDEEKEEKEE BACU019028/1-529 RDLTAKMGLE KEE------- ---------- ---------- --------EE 201 250 ENSP00000279392/1-556 EEKGYKGKTR KKPVVK-KQA PGKASVSRKQ AREESEESEA EPVQRTAKKV ENSBTAP00000006619/1-544 EGKESKGRTR KKPGTKTKQA PGKASGSRKQ AKEESEDSEE DPAQGRGKK- ENSTTRP00000005199/1-548 EEEGSKDRTR KKPGTNNKQA PGKASASRKQ AREESEDSE- ERAQGPGKKA bmy_00775T0/1-585 EEKESKGRIR KKPGTKNRQA PGKASASRKQ AREESEDSE- ERAQGPGKKA BACU019028/1-529 EEKESKGRIR KKPGTKNRQA PGKASASRKQ AREETEDSE- ERAQGPRKKA 251 300 ENSP00000279392/1-556 EGNKGTKSLK ESEQES--EE EILAQKKEQR EEEVEEEEKE EDEEKGDWKP ENSBTAP00000006619/1-544 ----GAKSHQ GSAKESEEEE ETVTKNKENR EEE------- -----EDWKP ENSTTRP00000005199/1-548 KGKKGAKSHQ ESEKES-EEE ETLANKKENR DEE------- -----EDWKL bmy_00775T0/1-585 EGKKGAKSHQ ESEKES--EE ETLAKKKENR EEE------- -----EEWKL BACU019028/1-529 EGKKGAKSHQ ESEKES--EE ETLAKKKENR EEE------- -----EDWKL 301 350 ENSP00000279392/1-556 RTRSNGRRK- SAREERSCKQ KSQAKRLLGD SDSEEEQ--K EAASSGDDSG ENSBTAP00000006619/1-544 TDQSSGGKR- SVREERSCKQ KSRAARLLGE RGDREEQKEK AAASSGDSSE ENSTTRP00000005199/1-548 TAQSSGGQRS SSLEERSC-Q KSMAARLLGS PGDREEQW-K EAAGSGNSSG bmy_00775T0/1-585 TAQSSGGQRS SSREERSCKQ KSRAARLLGY PGDREEQKER SAAGSGDSSG BACU019028/1-529 TAQSSGGQRS SSLEERSCKQ NSRAARLLGY PGDREEPKER SAAGSGDSSG 351 400 ENSP00000279392/1-556 RDREPPVQRK SEDRTQLKGG KRLSGSSEDE -EDSGKGEPT AKGSRKMARL ENSBTAP00000006619/1-544 EDEVPLVQRK RKDRTQGKDG KRQSGSSEED GEDSPRKVKP TTG--KTAKE ENSTTRP00000005199/1-548 EDEEPLVQRK SKDKTQWKGG KRQSGSSEED GEDSWRKMTP TTG--KTANV bmy_00775T0/1-585 EDEEPLVQRK SKDSTQWKGR KRQSESSEED GENSWRKMTP TTG--KTANV BACU019028/1-529 EDEEPLVQRK SKDSTQWKGG KRQSGSSEED GEDSWRKMTP TSG--KTANV 401 450 ENSP00000279392/1-556 GSTSGEESDL EREVSDSEAG GGPQGERKNR S--SKKSSRK GRTRSSSSSS ENSBTAP00000006619/1-544 GSISGEASDS EKEVSDSEAE GSPKKERKNR S--SKKSSKK GRTRSPSSSS ENSTTRP00000005199/1-548 GSINGEASDS EKEVSDSEAE GTPKKERKNR S--SKKSSKK GRTRSSSSSS bmy_00775T0/1-585 GTINGEASDS EKEVSDSEAE GTPKKERKNR S--SKKSSKK GRTRSSSSSS BACU019028/1-529 GSINGEASDS EKEVSDSEAE GTPKKERKNR XLYSKKSSKK GRTRSSSSSS 451 500 ENSP00000279392/1-556 -DGSPEAKGG KAGSGRRGED HPAVMRLKRY IRACGAHRNY KKLLGSCCSH ENSBTAP00000006619/1-544 IDGSPEHKGR KAGSGRSGED HPAVRRLKRY IRACGAHRNY KKLLGSCRSR ENSTTRP00000005199/1-548 TDGSPEHKGR KAGSGRPGED HPSVMRLKRY IRACGAHRNY KKLLGSCRSH bmy_00775T0/1-585 TDGSPEHKGR KAGSGRPGED HPSVMRLKRY IRACGAHRNY KKLLGSCRSH BACU019028/1-529 TDGSPEHKGR KAGSGRPGED HPSVMRLKRY IRACGAHRNY KKLLGSCRSH 501 550 ENSP00000279392/1-556 KERLSILRAE LEALGMKGTP SLGKCRALKE QREEAAEVAS LDVANIISGS ENSBTAP00000006619/1-544 KERLSVLRAE LEALGMKGNP SLEKCRALKE QREEAAEVAS LDITNIISSS ENSTTRP00000005199/1-548 KERLSVLRAE LEALGMKGNP SLEKCRALKE QREEAAEVAS LDITNIISGS bmy_00775T0/1-585 KERLSVLRAE LEALGMKGNP SLEKCRVLKE QREEAAEVAS LDITNIISGS BACU019028/1-529 KERLSVLRAE LEALGMKGNP SLEKCRVLKE QREEAAEVAS LDITNIISGS 551 600 ENSP00000279392/1-556 GRPRRRTAWN PLGEAAPPGE LYRRTLDSDE ERPRPAPPDW SHMRGIISSD ENSBTAP00000006619/1-544 GRPRRRTAWN PSGETAPPGE LYRRILDSDE ERPHPPPPDW SHLRGIISSD ENSTTRP00000005199/1-548 GRPRRRTAWN PAGAAAPPGE LYCRTLDSEE ERPRPPPPDW SHMRGIISSD bmy_00775T0/1-585 GRPRRRTAWN PAGEAAPPGE LYHRTLDSEE ERPRPPPPDW SHMRGIISSD BACU019028/1-529 GRPRRRTAWN PAGEAAPPGE LYRRTLDSEE E--------- ---------- 601 650 ENSP00000279392/1-556 GESN ENSBTAP00000006619/1-544 GESN ENSTTRP00000005199/1-548 GESN bmy_00775T0/1-585 GESN BACU019028/1-529 ----