KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:07 2014 Check: 00 .. Name: BACU013860/1-741 Len: 839 Check: 9698 Weight: 1.00 Name: ENSTTRP00000012904/1-820 Len: 839 Check: 1295 Weight: 1.00 Name: ENSP00000450864/1-820 Len: 839 Check: 5007 Weight: 1.00 Name: bmy_14442T0/1-741 Len: 839 Check: 7067 Weight: 1.00 Name: ENSBTAP00000006650/1-820 Len: 839 Check: 5122 Weight: 1.00 // 1 50 BACU013860/1-741 MSDTRRRVKV YTLNEDRQWD DRGTGHVSST YVEELKGMSL LVRAESDEIF ENSTTRP00000012904/1-820 MTDTRRRVKV YTLNEDRQWD DRGTGHVSSG YVERLKGMSL LVSAESDGSL ENSP00000450864/1-820 MTDTRRRVKV YTLNEDRQWD DRGTGHVSSG YVERLKGMSL LVRAESDGSL bmy_14442T0/1-741 MTDTRRRVKV YTLNEDRQWD DRGTGHVSSG YVERLKGMSL LVRAESDGSL ENSBTAP00000006650/1-820 MTDTRRRVKV YTLNEDRQWD DRGTGHVSSG YVERLKGMSL LVRAESDGSL 51 100 BACU013860/1-741 IF-------- ----KQDTLI VWSEAENYDL ALSFQEKAGC DEIWEKICQV ENSTTRP00000012904/1-820 LLESKINPNT AYQKQQDTLI VWSEAENYDL ALSFQEKAGC DEIWEKICQV ENSP00000450864/1-820 LLESKINPNT AYQKQQDTLI VWSEAENYDL ALSFQEKAGC DEIWEKICQV bmy_14442T0/1-741 LLESKINPNT AYQKQQDTLI VWSEAENYDL ALSFQEKAGC DEIWEKICQV ENSBTAP00000006650/1-820 LLESKINPNT AYQKQQDTLI VWSEAENYDL ALSFQEKAGC DEIWEKICQV 101 150 BACU013860/1-741 QGKDPSVEVT QDLIDESEEE RFEEMPETSH LIDLPTCELN KLEEIADLVT ENSTTRP00000012904/1-820 QGKDPSVDIT QDLVDESEEE RFDDMSSPG- -LELPSCELS RLEEIAELVA ENSP00000450864/1-820 QGKDPSVDIT QDLVDESEEE RFDDMSSPG- -LELPSCELS RLEEIAELVA bmy_14442T0/1-741 QGKDPSVDIT QDLVDESEEE RFDDMSSPG- -LELPSCELS RLEEIAELVA ENSBTAP00000006650/1-820 QGKDPSVDIT QDLVDESEEE RFDDMSSPG- -LELPSCELS RLEEIAELVA 151 200 BACU013860/1-741 SVLSSPIRRE KLALALENEG YIKKLLQLFQ ACENLENTEG LHHLYEIIRG ENSTTRP00000012904/1-820 SSLPSPLRRE KLALALENEG YIKKLLELFH VCEDLENIEG LHHLYEIIKG ENSP00000450864/1-820 SSLPSPLRRE KLALALENEG YIKKLLELFH VCEDLENIEG LHHLYEIIKG bmy_14442T0/1-741 SSLPSPLRRE KLALALENEG YIKKLLELFH VCEDLENIEG LHHLYEIIKG ENSBTAP00000006650/1-820 SSLPSPLRRE KLALALENEG YIKKLLELFH VCEDLENIEG LHHLYEIIKG 201 250 BACU013860/1-741 ILFLNKATLF EVMFSDECIM DVVGCLEYDP ALAQPKRHRE FLTKTAKFKE ENSTTRP00000012904/1-820 IFLLNRTALF EVMFSEECIM DVIGCLEYDP ALSQPRKHRE FLTKTAKFKE ENSP00000450864/1-820 IFLLNRTALF EVMFSEECIM DVIGCLEYDP ALSQPRKHRE FLTKTAKFKE bmy_14442T0/1-741 IFLLNRTALF EVMFSEECIM DVIGCLEYDP ALSQPRKHRE FLTKTAKFKE ENSBTAP00000006650/1-820 IFLLNRTALF EVMFSEECIM DVIGCLEYDP ALSQPRKHRE FLTKTAKFKE 251 300 BACU013860/1-741 VIPITDSELR QKIHQTYRVQ YIQDIILPTP SVFEENFLST LTSFIFFNKV ENSTTRP00000012904/1-820 VIPISDPELK QKIHQTYRVQ YIQDMVLPTP SVFEENMLST LHSFIFFNKV ENSP00000450864/1-820 VIPISDPELK QKIHQTYRVQ YIQDMVLPTP SVFEENMLST LHSFIFFNKV bmy_14442T0/1-741 VIPISDPELK QKIHQTYRVQ YIQDMVLPTP SVFEENMLST LHSFIFFNKV ENSBTAP00000006650/1-820 VIPISDPELK QKIHQTYRVQ YIQDMVLPTP SVFEENMLST LHSFIFFNKV 301 350 BACU013860/1-741 EIVSMLQEDE KFLSEVFAQL TDEATDDDKR RELVNFFKEF CAFSQTLQPQ ENSTTRP00000012904/1-820 EIVGMLQEDE KFLTDLFAQL TDEATDEEKR QELVNFLKEF CAFSQTLQPQ ENSP00000450864/1-820 EIVGMLQEDE KFLTDLFAQL TDEATDEEKR QELVNFLKEF CAFSQTLQPQ bmy_14442T0/1-741 EIVGMLQEDE KFLTDLFAQL TDEATDEEKR QELVNFLKEF CAFSQTLQPQ ENSBTAP00000006650/1-820 EIVGMLQEDE KFLTDLFAQL TDEATDEEKR QELVNFLKEF CAFSQTLQPQ 351 400 BACU013860/1-741 NRDAFFKTLA KLGILPALEI VMGMDDLQVR SAATDIFSYL VEFSPSMVRE ENSTTRP00000012904/1-820 NRDAFFKTLS NMGILPALEV ILGMDDTQVR SAATDIFSYL VEYNPSMVRE ENSP00000450864/1-820 NRDAFFKTLS NMGILPALEV ILGMDDTQVR SAATDIFSYL VEYNPSMVRE bmy_14442T0/1-741 NRDAFFKTLS NMGILPALEV ILGMDDTQVR SAATDIFSYL VEYNPSMVRE ENSBTAP00000006650/1-820 NRDAFFKTLS NMGILPALEV ILGMDDTQVR SAATDIFSYL VEYNPSMVRE 401 450 BACU013860/1-741 FVMQEAQQSD D--------- ----DILLIN VVIEQMICDT DPELGGAVQL ENSTTRP00000012904/1-820 FVMQEAQQND D--------- ----DILLIN LIIEHMICDT DPELGGAVQL ENSP00000450864/1-820 FVMQEAQQND D--------- ----DILLIN LIIEHMICDT DPELGGAVQL bmy_14442T0/1-741 FVMQEAQQND DVSKKLTEQK ITNKDILLIN LIIEHMICDT DPELGGAVQL ENSBTAP00000006650/1-820 FVMQEAQQND D--------- ----DILLIN LIIEHMICDT DPELGGAVQL 451 500 BACU013860/1-741 MGLLRTLIDP ENMLATTNKT EKSEFLNFFY NHCMHVLTAP LLTNTSEDKC ENSTTRP00000012904/1-820 MGLLRTLVDP ENMLATANKT EKTEFLGFFY KHCMHVLTAP LLANTTEDKP ENSP00000450864/1-820 MGLLRTLVDP ENMLATANKT EKTEFLGFFY KHCMHVLTAP LLANTTEDKP bmy_14442T0/1-741 MGLLRTLVDP ENMLATANKT EKTEFLGFFY KHCMHVLTAP LLANTTEDKP ENSBTAP00000006650/1-820 MGLLRTLVDP ENMLATANKT EKTEFLGFFY KHCMHVLTAP LLANTTEDKP 501 550 BACU013860/1-741 EKG------- ---------- ---------- ---------- ---------- ENSTTRP00000012904/1-820 SKDDFQTAQL LALVLELLTF CVEHHTYHIK NYIINKDILR RVLVLMASKH ENSP00000450864/1-820 SKDDFQTAQL LALVLELLTF CVEHHTYHIK NYIINKDILR RVLVLMASKH bmy_14442T0/1-741 SKDDFQTAQL LALVLELLTF CVEHHTYHIK NYIINKDILR RVLVLMASKH ENSBTAP00000006650/1-820 SKDDFQTAQL LALVLELLTF CVEHHTYHIK NYIINKDILR RVLVLMASKH 551 600 BACU013860/1-741 ------ALRF MRRIIGLKDE FYNRYITKGN LFEPVINALL DNGTRYNLLN ENSTTRP00000012904/1-820 AFLALCALRF KRKIIGLKDE FYNRYIMKSF LFEPVVKAFL NNGSRYNLMN ENSP00000450864/1-820 AFLALCALRF KRKIIGLKDE FYNRYIMKSF LFEPVVKAFL NNGSRYNLMN bmy_14442T0/1-741 AFLALCALRF KRKIIGLKDE FYNRYIMKSF LFEPVVKAFL NNGSRYNLMN ENSBTAP00000006650/1-820 AFLALCALRF KRKIIGLKDE FYNRYIMKSF LFEPVVKAFL NNGSRYNLMN 601 650 BACU013860/1-741 SAVIELFEFI RVEDIKSLTT HIVENFYKAL ESIEYVQTFK GLKTKYEQEK ENSTTRP00000012904/1-820 SAIIEMFEFI RVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000450864/1-820 SAIIEMFEFI RVEDIKSLTA HVIENYWKAL EDVDYVQTFK GLKLRFEQQR bmy_14442T0/1-741 SAIIEMFEFI RVEDIKSLTA HVIENYWKAL EDVDYVQTFK GLKLRFEQQR ENSBTAP00000006650/1-820 SAIIEMFEFI RVEDIKSLTA HVVENYWKAL EDVDYVQTFK GLKLRFEQQR 651 700 BACU013860/1-741 DRQ-NQKLNS VPSILRSNRF RRDAKALEED EEMWFNEDEE --EEGKTVVA ENSTTRP00000012904/1-820 XXXXXXXXXX MRSILRNHRY RRDARTLEDE EEMWFNTDED DMEDGEAVVS ENSP00000450864/1-820 ERQDNPKLDS MRSILRNHRY RRDARTLEDE EEMWFNTDED DMEDGEAVVS bmy_14442T0/1-741 ERQDNPKLD- ---------- ---------- ---------- ---------- ENSBTAP00000006650/1-820 ERQDNPKLDS MRSILRNHRY RRDARTLEDE EEMWFNTDED DMEDGEAVVS 701 750 BACU013860/1-741 PVEKSKAEDD FPDSYEKFME TKKAKESEDK ENLPKRTSS- ---------- ENSTTRP00000012904/1-820 PSDKTKSDDD IMDPISKFME RKKLKESEEK EVLLKTNLSG RQSPSFKLSL ENSP00000450864/1-820 PSDKTKNDDD IMDPISKFME RKKLKESEEK EVLLKTNLSG RQSPSFKLSL bmy_14442T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000006650/1-820 PSDKTKNDDD IMDPISKFME RKKLKESEEK EVLLKTNLSG RQSPSFKLSL 751 800 BACU013860/1-741 -GGFKFTFSH STSAANGTNS TNSKSVVAQT PPASSNGSSS KTTNLATSVT ENSTTRP00000012904/1-820 SSGTKTTLSS QSPATNLPGS PGSPG--SPG SPGSP-GSIP KNTSQTAAIT ENSP00000450864/1-820 SSGTKTNLTS QSSTTNLPGS PGSPG--SPG SPGSP-GSVP KNTSQTAAIT bmy_14442T0/1-741 -SGTKTTLSS QSPATNLPGS PGSPG--SPG SPGSP-GSIP KNTSQTAAIT ENSBTAP00000006650/1-820 SSGTKTTLSS QSPATNLPGS PGSPG--SPG SPGSP-GSIP KSTSQTAAIT 801 850 BACU013860/1-741 ATKGSLVGLV DYPDDEEEDE EEETSP---- -RKRPRLGS ENSTTRP00000012904/1-820 -TKGGLVGLV DYPDDDEDDD EDEDKEDTLP LSKKAKFES ENSP00000450864/1-820 -TKGGLVGLV DYPDDDEDDD EDEDKEDTLP LSKKAKFDS bmy_14442T0/1-741 -TKGGLVGLV DYPDDDEDDD EDEDKEDTLP LSKKAKFES ENSBTAP00000006650/1-820 -TKGGLVGLV DYPDDDEEDD EDDDKEDTLP LSKKAKFES