KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:09 2014 Check: 00 .. Name: ENSP00000262441/1-553 Len: 561 Check: 2776 Weight: 1.00 Name: ENSTTRP00000015762/1-553 Len: 561 Check: 6326 Weight: 1.00 Name: ENSBTAP00000006662/1-553 Len: 561 Check: 525 Weight: 1.00 Name: bmy_01690T0/1-506 Len: 561 Check: 2916 Weight: 1.00 Name: BACU020465/1-554 Len: 561 Check: 5088 Weight: 1.00 // 1 50 ENSP00000262441/1-553 MKLGSSRAGP GRGSAGLLPG VHELPMGIPA PWGTSPLSFH RKCSLWAPGR ENSTTRP00000015762/1-553 MRPEPRRAGP RSRRVGPLPG AHTVPAGIPA TRGARPPPSP GKRALWTPAR ENSBTAP00000006662/1-553 MRPGPSWAGS RRRAVSPLPA AHVLLMGTPA AQGAGPLSSP RKPAHWTPAR bmy_01690T0/1-506 MRPELSRAGP RSRRVGPLPG AHTLPTGIPA TRGAGPPPSP GKRALWTPAR BACU020465/1-554 MRPEPSRAGP RSRRVGPLPG AHTLPTGSPA TRGARPPPSP GKRALWTPAR 51 100 ENSP00000262441/1-553 PFLTLVLLVS IKQ---VTGS LLEETTRKWA QYKQACLRDL LKEPSGIFCN ENSTTRP00000015762/1-553 PFLALLLLVS IKQ---VTGS LLEETTRKWA QYKEKCLRDL LKETSGTVCN ENSBTAP00000006662/1-553 PFLALLLLVS IKQ---VTGS LLEETTRKWA QYKEKCLRDL LKETSGAVCN bmy_01690T0/1-506 PFLALLLLVS IKQARFVTGP LI-------- ---------- ------SMCA BACU020465/1-554 PFLALLLLVS IKQ---VTGS LLEETTRKWA QYKEKCLRDL LKETSGTVCN 101 150 ENSP00000262441/1-553 G--TFDQYVC WP--HSSPGN VSVPCPSYLP WWSEESSGRA YRHCLAQGTW ENSTTRP00000015762/1-553 G--TFDQYVC WP--HSTAGN VSVPCPSYLP WWRKEHSGRA YRYCLSQGTW ENSBTAP00000006662/1-553 G--TFDKYVC WP--HSTPGN VSVPCPSYLP WWREENSGRA YRYCLSRGAW bmy_01690T0/1-506 GLIPLQEMSL FPALHTYLGG A--------- ----KNSARA YRYCLSQGTW BACU020465/1-554 G--TFDQYVC WP--HSTAGN VSVPCPSYLP WWRKDNSGRA YRYCLSQGIW 151 200 ENSP00000262441/1-553 QTIENATDIW QDDSECSENH SFKQNVDRYA LLSTLQLMYT VGYSFSLISL ENSTTRP00000015762/1-553 QTLENSTDIW QDNSECAEDH SFKQKXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000006662/1-553 QTLENSTDIW QDNSECAEDD SFKQKVEHRT LLSTLQLLYT VGYSLSIVSL bmy_01690T0/1-506 QTLENSTDIW QDNSECAEDH SFKQKVEHRA LLSTLQLLYT VGYSLSIVSL BACU020465/1-554 QTLENSTDIW QDNSECAEDH SFKQKVEHRA LLSTLQLLYT VGYSLSIVSL 201 250 ENSP00000262441/1-553 FLALTLLLFL RKLHCTRNYI HMNLFASFIL RTLAVLVKDV VFYNSYSKRP ENSTTRP00000015762/1-553 XXXXXXXXXX XKLHCTRNYI HMNLFASFIL RALAVLVKDV IFYNSYSKRP ENSBTAP00000006662/1-553 FLALTLLLFL RKLHCTRNYI HMNLFASFIL RALAVLVKDV IFYKSYSKTP bmy_01690T0/1-506 FLALTLLLFL RKLHCTRNYI HMNLFASFIL RALAVLVKDV IFYNSYSKRP BACU020465/1-554 FLALTLLLFL RKLHCTRNYI HMNLFASFIL RALAVLVKDV IFYNSYSKRP 251 300 ENSP00000262441/1-553 DNENGWMSYL SEMSTSCRSV QVLLHYFVGA NYLWLLVEGL YLHTLLEPTV ENSTTRP00000015762/1-553 DSEKQWMSYV SEVSTSCRSA QVLLHYFVGA NYSWLLVEGL YLHTLLEPIV ENSBTAP00000006662/1-553 NSETEWLSYV SEIAASCRSA QVLLHYFVGT NYSWLLIEGL YLHTLLEPIM bmy_01690T0/1-506 DSEKEWMSYV SEVSTSCRSA QVLLHYFVGA NYSWLLVEGL YLHTLLEPIV BACU020465/1-554 NSEKEWMSYV SEVSTSCRSA QVLLHYFVGA NYSWLLVEGL YLHTLLEPIV 301 350 ENSP00000262441/1-553 LPERRLWPRY LLLGWAFPVL FVVPWGFARA HLENTGCWTT NGNKKIWWII ENSTTRP00000015762/1-553 LSERRLWPRY LLVGWAFPVL FVVPWSIARA QLENTGCWGT NRNKNVWWII ENSBTAP00000006662/1-553 LSERRLWPRY LLVGWGFPVL FVVPWSIARA QLENTGCWGN NRNKNIWWII bmy_01690T0/1-506 LSERRLWPRY LLPSRCSSL- ---------- ------CWGT NRNKNIWWII BACU020465/1-554 LSERRLWPRY LLVGWAFPVL FVVPWSIARA QLENTGCWGT NRNKNIWWII 351 400 ENSP00000262441/1-553 RGPMMLCVTV NFFIFLKILK LLISKLKAHQ MCFRDYKYRL AKSTLVLIPL ENSTTRP00000015762/1-553 RGPMLLCVTV NFFIFLKILK LLISKLKAHQ MXXXXXXXXL AKSTLVLIPL ENSBTAP00000006662/1-553 RGPMMLCITV NFFIFLKILK LLISKLKAHQ MCFRDYKYRL AKSTLVLIPL bmy_01690T0/1-506 RGPMLLCVTV NFFIFLKILK LLISKLKAHQ MCFRDYKYRL AKSTLVLIPL BACU020465/1-554 RGPMLLCVTV NFFIFLKILK LLISKLKAHQ MCFRDYKYRL AKSTLVLIPL 401 450 ENSP00000262441/1-553 LGVHEILFSF ITDDQVEGFA KLIRLFIQLT LSSFHGFLVA LQYGFANGEV ENSTTRP00000015762/1-553 LGVHEILFSF ITDDQVEGFP RYIRLFIQLT LSSFHGLLVA LQYCFSNGEV ENSBTAP00000006662/1-553 LGVHDILFSF ITDDQVEGFP RHIRLFIQLT LGSFHGLLVA SQYCFANGEV bmy_01690T0/1-506 LGVHEILFSF ITDDQVEGFP RYIRLFIQLT LSSFHGLLVA LQYCFANGEV BACU020465/1-554 LGVHEILFSF ITDDQVEGFP RYIRLFIQLT LSSFHGLLVA LQYCFANGEV 451 500 ENSP00000262441/1-553 KAELRKYWVR FLLARHSGCR ACVLGKDFRF LGKCPKKLSE GDGAEKLRKL ENSTTRP00000015762/1-553 KAELRKQWAR FLLAHHSGCR AWVLGKNFRF LEKCPKKLSE GTGSSKLQKA ENSBTAP00000006662/1-553 KAELRKQWAR FLLAHHSGCR AWVLGKNFRF LGKCPKKLSE GTNSGSLQKA bmy_01690T0/1-506 KAELRKQWAR FLLAHHSGCR AWVLGKNFRF LEKCPKKLSE GTGSGKLQKA BACU020465/1-554 KAELRKQWAR FLLAHHSGCR AWVLGKNFRF LEKCPKKLAE GTGSGKLQKA 501 550 ENSP00000262441/1-553 QPSLNSGRLL HLAMR-GLGE LGAQPQQDHA RWPRGSSLSE CSEGDVTMAN ENSTTRP00000015762/1-553 RPSPHGGQLL HSTEE-GLRV AGALPRQGHA AWPRGSSVSE SSEGDFTLVH ENSBTAP00000006662/1-553 RPWPGGGRLL HLTKE-GLGV AGTPPRQGHA AWPRGSSLSE SSEGYFTLVH bmy_01690T0/1-506 RPSPHGGRLL HLTAE-GLGA AGALPRQGHA AWPRGSSVSE SSEGDFTLIH BACU020465/1-554 RPSPHGGRLL HSTAEGGRGA AAPLPRQGHA AWPRGSSVSE SSEGDFTLVH 551 600 ENSP00000262441/1-553 TMEEILEESE I ENSTTRP00000015762/1-553 TVEEILEESE I ENSBTAP00000006662/1-553 TMEEIFKESE I bmy_01690T0/1-506 TMEEILEESE I BACU020465/1-554 TMEEILEESE I