KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:10 2014 Check: 00 .. Name: ENSP00000302562/1-488 Len: 491 Check: 1430 Weight: 1.00 Name: ENSBTAP00000006679/1-484 Len: 491 Check: 6477 Weight: 1.00 Name: ENSTTRP00000011146/1-488 Len: 491 Check: 6090 Weight: 1.00 Name: bmy_03224T0/1-324 Len: 491 Check: 1001 Weight: 1.00 Name: BACU006073/1-489 Len: 491 Check: 281 Weight: 1.00 // 1 50 ENSP00000302562/1-488 MAAGSEATTP VIVAAGAGGE EGEHVKPFKP EKAKEIIMSL QQPAIFCNMV ENSBTAP00000006679/1-484 MAARPGAITN ADSASGGGEE EGKHVKPFTP EKAKEIIMCL QQPAVFYNMV ENSTTRP00000011146/1-488 MAADSGAFTN EDSES--GEE EGKHVKPFTP EKAKEIIMSL QQPAIFCNMV bmy_03224T0/1-324 ---------- ---------- ---------- ---------- ---------- BACU006073/1-489 MAADSGAITN EDSES--GEE EGKHVKPFTP EKAKEIIMSL QQPAVFCNMV 51 100 ENSP00000302562/1-488 FDWPARHWNA KYLSQVLHGK QIRFRMGMKS MSTVPQFETT CNYVEATLEE ENSBTAP00000006679/1-484 FDWPAQHWTA KHLSEVLHGK QIRFRMGTKS TDTAPQFETA CNYVEATLEE ENSTTRP00000011146/1-488 FDWPAQHWTA KHLSEVLQGK QIRFRMGTKR TDTAPQFETT CSYVEATLEE bmy_03224T0/1-324 ---------- ---------- ---------- ---------- ---------- BACU006073/1-489 FDWPAQHWTA KHLSEVLQGK QIRFRMGTKH TDTAPQFETT CSYVEATLEE 101 150 ENSP00000302562/1-488 FLTWNCDQSS ISGPFRDYDH SKFWAYADYK YFVSLFEDKT DLFQDVKWSD ENSBTAP00000006679/1-484 FLSWNSDQSS ISGAFRDYDH SKFWAYADYK YFVSLFEDKT DIFQDVIWSD ENSTTRP00000011146/1-488 FLTWNCDRSS ISGPFRDYDH SKFWAYADYK YFVSLFEDKT DIFQDVMWSD bmy_03224T0/1-324 ---------- ---------- ---------- ---------- ---------- BACU006073/1-489 FLTWNCDRSS ISGPFRDYDH SKFWAYADYK YFVSLFEDKT DIFQDVIWSD 151 200 ENSP00000302562/1-488 FGFPGRNGQE STLWIGSLGA HTPCHLDSYG CNLVFQVQGR KRWHLFPPED ENSBTAP00000006679/1-484 FGFPGRNGQE STLWIGSLGA HTPCHLDTYG CNLVFQVQGR KRWHLFPPED ENSTTRP00000011146/1-488 FGFPGRNGQE STLWIGSMGA HTPCHLDTYG CNLVFQVQGR KRWHLFPPED bmy_03224T0/1-324 ---------- -------MGA HTPCHLDTYG CNLVFQVQGR KRWHLFPPED BACU006073/1-489 FGFPGRNGQE STLWIGSTGA HTPCHLDTYG CNLVFQVQGR KRWHLFPPED 201 250 ENSP00000302562/1-488 TPFLYPTRIP YEESSVFSKI NVVNPDLKRF PQFRKAQRHA VTLSPGQVLF ENSBTAP00000006679/1-484 TPFLYPTRIP YEESSVFSKI NVVNPDLKRF PQFRKARRHM VTLSPGQVLF ENSTTRP00000011146/1-488 TPFLYPTRIP YEESSVFSKI NVVNPDLKRF PQFWKARRHM VTLSPGQVLF bmy_03224T0/1-324 TPFLYPTRIP YEESSVFSKI NVVNPDLKCF PQFWKARRHM VTLSPGQVLF BACU006073/1-489 TPFLYPTRIP YEESSVFSKI NVVNPDLKRF PQFWKARRHM VTLSPGQVLF 251 300 ENSP00000302562/1-488 VPRHWWHYVE SIDPVTVSIN SWIELEEDHL ARVEEAITRM LVCALKTAEN ENSBTAP00000006679/1-484 VPRHWWHYVE SIDPVTVSIN SWIELEEDHQ TRVEEAITRM LVCALKTAEN ENSTTRP00000011146/1-488 VPRHWWHYVE SIDPVTVSIN SWIELEEDHQ ARVEEAITRM LVCALKTAEN bmy_03224T0/1-324 VPRHWWHYVE SIDPVTVSIN SWIELEEDHQ ARVEEAITRM LVCALKTAEN BACU006073/1-489 VPRHWWHYVE SIDPVTVSIN SWIELEEDHQ ARVEEAITRM LVCALKTAEN 301 350 ENSP00000302562/1-488 PQNTRAWLNP TEVEETSHAV NCCYLNAAVS AFFDRCRTSE VVEIQALRTD ENSBTAP00000006679/1-484 PHNTRAWLNP TELEETSHEI NCHYLNGAIS AFFNHYGTSE VVETQALRTN ENSTTRP00000011146/1-488 PHDMRAWLNP TEVEETSHEV NCRYLNGAVS AFFDHYGTSK VVETQALSTD bmy_03224T0/1-324 PHDTRAWLNP TEVEETSHEV NCRYLNGAVS AFFDHYGTSK VVETQALSTN BACU006073/1-489 PHDTRAWLNP TEVEETSHEV NCRYLNGAVS AFFDHYGTSK VVETQALSTN 351 400 ENSP00000302562/1-488 GEHMKKEELN VCNHMEVGQT GSQNLTTGTD KPEAASPFGP DLVPVAQRSE ENSBTAP00000006679/1-484 REYTIKEELN MHSHVGVEQA GGHNLSSETV KQEAASPFGL DLVPVTPSSE ENSTTRP00000011146/1-488 GEYVIKEELN VHNHVEGAQT SSHSLTLGTV KQEAASPFGP DLVPVIPGSQ bmy_03224T0/1-324 GEYXIKEELN VHNHVEVEQT SSHSLTLGTV SQEAASPFGP DLVPVIPGSQ BACU006073/1-489 GEYVIKEELN VHNHVEVEQT SSHSLTLGTV KQEAASPFGP DLVPVIPGSQ 401 450 ENSP00000302562/1-488 EPPSERGGIF GSDGKDFVDK DGEHFGKLHC AKRQQIMSNS ENAIEEQIAS ENSBTAP00000006679/1-484 EPSSERGGIF ENDGEDFVSK NGKSFG---- -KRQRMMSES ENAVVEQIAS ENSTTRP00000011146/1-488 EPPSERGGMF ESDGEDFVGK NGKRFGKLHC TKRQRMMSES ENAVVEQMAS bmy_03224T0/1-324 EPPSERGGMF ESDGEDFVDK NGKRFGKLHY TKRQRMMSES ENAVVEQIAS BACU006073/1-489 EPPSERGGMF ESDGEDFVGK NGKRFGKLHY TKRQRMMSES ENAVVEQIAS 451 500 ENSP00000302562/1-488 NTTTTP-QTF ISTDDLLDCL VNPQVTRIVA QLLIQGRSL- - ENSBTAP00000006679/1-484 DRTVAVSQTF VSTDDLLDCL VNPQVTRIVA QLLIQGRST- - ENSTTRP00000011146/1-488 NSTVAPSQTF ISTDDLLDCL VNPQVTRIVA QLLIQGRSLR - bmy_03224T0/1-324 NSTVAPSQTF LSTDDLLDCL VNPQVTRIVA QLLIQGRSLR L BACU006073/1-489 NSTVAPSQTF ISTDDLLDCL VNPQVTRIVA QLLIQGRSLR L