KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:13 2014 Check: 00 .. Name: ENSP00000366243/1-1383 Len: 1421 Check: 2654 Weight: 1.00 Name: ENSBTAP00000006709/1-1383 Len: 1421 Check: 6028 Weight: 1.00 Name: ENSTTRP00000005689/1-1382 Len: 1421 Check: 1029 Weight: 1.00 Name: bmy_18418T0/1-1416 Len: 1421 Check: 1102 Weight: 1.00 Name: BACU009494/1-1371 Len: 1421 Check: 4450 Weight: 1.00 // 1 50 ENSP00000366243/1-1383 MYATDSRGHS PAFLQPQNGN SRHPSGYVPG KVVPLRPPPP PKSQASAKFT ENSBTAP00000006709/1-1383 MHATNSRGHS PAFLQPQNGN SHHSSGYVPG KVVPLRPPPP PKSQASAKFT ENSTTRP00000005689/1-1382 MHATNSRGHS PAFLQPQNGN SHRSSGYVPG KVVPLRPPPP PKSQAAAKFT bmy_18418T0/1-1416 MHATNSRGHP PAFLQPQNGN SHRSSGYVPG KVVPLRPPPP PKSQASAKFT BACU009494/1-1371 MHATNSRGHS PAFLQPQNGN SHRSSGYVPG KVVPLRPPPP PKSQASAKFT 51 100 ENSP00000366243/1-1383 SIRREDRATF AFSPEEQQAQ RESQKQKRHK NTFICFAITS FSFFIALAII ENSBTAP00000006709/1-1383 SIRQEAQASF GFSSEEQQVQ RERRKQKRHK NTFICFAITS FSFFVALAVI ENSTTRP00000005689/1-1382 STRPEARATF AFSSEEQQAQ RESRKQKRHK NTFICFAITS FSFFVALAVI bmy_18418T0/1-1416 STRPEARATF AFSSEEQQAQ RESRKQKRHK NTFICFAITS FSFFVALAVI BACU009494/1-1371 STRPEARATF AFSSEEQQAQ RESRKQKRHK NTFICFAITS FSFFVALAVI 101 150 ENSP00000366243/1-1383 LGISSKYAPD ENCPDQNPRL RNWDPGQDSA KQVVIKEGDM LRLTSDATVH ENSBTAP00000006709/1-1383 LGISSKYAPD ENCPDQNPRL RNWDPGQDSA KQVVIKEGDM FRLTSDATVN ENSTTRP00000005689/1-1382 LGISSKYAPD ENCPDQNPRL RNWDPGQDSA KQVVIKEGDM FRLTSDATVN bmy_18418T0/1-1416 LGISSKYAPD ENCPDQNPRL RNWDPGQDSA KQVVIKEGDM FRLTSDATVN BACU009494/1-1371 LGISSKYAPD ENCPDQNPRL RNWDPGQDSA KQVVIKEGDM FRLTSDATVN 151 200 ENSP00000366243/1-1383 SIVIQDGGLL VFGDNKDGSR NITLRTHYIL IQDGGALHIG AEKCRYKSKA ENSBTAP00000006709/1-1383 SIVIQDGGLL VFGDDKDGSR NITLRTHYIL IKDGGALHIG AEKCRYKSKA ENSTTRP00000005689/1-1382 SIVIKDGGLL VFGDDKDGSR NITLRTRYIL IKDGGALHIG AENCRYKSKA bmy_18418T0/1-1416 SIVIKDGGLL VFGDDKDGSR NITLRTRYIL IKDGGALHIG AENCRYKSKA BACU009494/1-1371 SIVIKDGGLL VFGDDKDGSR NITLRTRYIL IKDGGALHIG AENCRYKSKA 201 250 ENSP00000366243/1-1383 TITLYGKSDE GESMPTFGKK FIGVEAGGTL ELHGARKASW TLLARTLNSS ENSBTAP00000006709/1-1383 TIALYGKSDE GESMPTFGKK FIGVEAGGTL ELHGTQKASW TLLVRTLNSS ENSTTRP00000005689/1-1382 TIALYGKSDE GESMPTFGKK FIGVEAGGTL ELHGAQKASW TLLVRTLNSS bmy_18418T0/1-1416 TIALYGKSDE GESMPTFGKK FIGVEAGGTL ELHGAQKASW TLLVRTLNSS BACU009494/1-1371 TIALYGKSDE GESMPTFGKK FIGVEAGGTL ELHGAQKASW TLLVRTLNSS 251 300 ENSP00000366243/1-1383 GLPFGSYTFE KDFSRGLNVR VIDQDTAKIL ESERFDTHEY RNESRRLQEF ENSBTAP00000006709/1-1383 GLTFGSYAFK KDFSRGLNVR VIDQDTAKIL EIERFDTHEF QNESRRLQKF ENSTTRP00000005689/1-1382 GLTFGSHAFE KDFSRGLNVR VIDQDTAKIL EIERFDTHEY HNESRRLQKF bmy_18418T0/1-1416 GLTFGSHAFE KDFSRGLNVR VIDQDTAKIL EIERFDTHEY HNESRRLQKF BACU009494/1-1371 GLTFGSHAFE KDFSRGLNVR VIDPDTAKIL EIERFDTHEY HNESRRLQKF 301 350 ENSP00000366243/1-1383 LRFQDPGRIV AIAVGDSAAK SLLQGTIQMI QERLGSELIQ GLGYRQAWAL ENSBTAP00000006709/1-1383 LRDQDPGRIV AIAVGDSAVK SLLQGTIQMI QDRLGSKLIQ GLGYRQAWAL ENSTTRP00000005689/1-1382 LRDQDPGRIV AIAVGDSAVK SLLQGTIQMI QDRLGSKLIQ GLGYRQAWAL bmy_18418T0/1-1416 LRDQDPGRIV AIAVGDSAVK SLLQGTIQMI QDRLGSKLIQ GLGYRQAWAL BACU009494/1-1371 LRDQDPGRIV AIAVGDSAVK SLLQGTIQMI QDRLGSKLIQ GLGYRQAWAL 351 400 ENSP00000366243/1-1383 VGVIDGGSTS CNESVRNYEN HSSGGKALAQ REFYTVDGQK FSVTAYSEWI ENSBTAP00000006709/1-1383 VGVIDGGSTS CNESVRNYEN HSSGGKALAQ REFYTVDGQK FSVTAYSEWK ENSTTRP00000005689/1-1382 VGVIDGGSTS CNESVRNYEN HSSGGKALAQ KEFYTVDGQK FSVTAYSEWI bmy_18418T0/1-1416 VGVIDGGSTS CNESVRNYEN HSSGGKALAQ REFYTVDGQK FSVTAYSEWI BACU009494/1-1371 VGVIDGGSTS CNESVRNYEN HSSGGKALAQ REFYTVDGQK FSVTAYSEWI 401 450 ENSP00000366243/1-1383 E--------- ---------- GVSLSGFRVE VVDGVKLNLL DDVSSWKPGD ENSBTAP00000006709/1-1383 E--------- ---------- GISFSGFWVE AIDGVKLHLL DDVSSWEPGD ENSTTRP00000005689/1-1382 E--------- ---------- GVSLSGFRVE VVDGVKLHLL DDVSSWKPGD bmy_18418T0/1-1416 EETGKHGGSE SKGAEFKTCS GVSLSGFRVE VVDGVKLHLL DDVSSWKPGD BACU009494/1-1371 E--------- ---------- GVSLSGFRVE VVDGVKLHLL DDVSSWKPGD 451 500 ENSP00000366243/1-1383 QIVVASTDYS MYQAEEFTLL PCSECSHFQV KVKETPQFLH MGEIIDGVDM ENSBTAP00000006709/1-1383 QIVVASTDYS MYQAEEFTLL PCPECSRFQV KVKETPQFLH MGEIIDGVDM ENSTTRP00000005689/1-1382 QIVVASTDYS MYQAEEFTLL PCPKCNRFQV KVKETPQFLH MGEIIDGVDM bmy_18418T0/1-1416 QIVVASTDYS MYQAEEFTLL PCPKCNRFQV KVKETPQFLH MGEIIDGVDM BACU009494/1-1371 QIVVASTDYS MYQAEEFTLL PCPKCNRFQV KVKETPQFLH MGEIIDGVDM 501 550 ENSP00000366243/1-1383 RAEVGILTRN IVIQGEVEDS CYAENQCQFF DYDTFGGHIM IMKNFTSVHL ENSBTAP00000006709/1-1383 RAEVGILTQN IVIRGEMEDS CYAENQCQFF DYDTFGGHVM IKKNFTSVHL ENSTTRP00000005689/1-1382 RAEVGILTQN IVIRGEMEDS CYAENQCQFF DYDTFGGHVM IKKNFTSVHL bmy_18418T0/1-1416 RAEVGILTQN IVIRGEMEDS CYAENQCQFF DYDTFGGHVM IKKNFTSVHL BACU009494/1-1371 RAEVGILTQN IVIRGEMEDS CYAENQCQFF DYDTFGGHVM IKKNFTSVHL 551 600 ENSP00000366243/1-1383 SYVELKHMGQ QQMGRYPVHF HLCGDVDYKG GYRHATFVDG LSIHHSFSRC ENSBTAP00000006709/1-1383 SHVELKHMGQ QHLGRYPVHF HLCGDVDYKG GYRHATFVDG LSIHHSFSRC ENSTTRP00000005689/1-1382 SHVELKHMGQ QHLGRYPVHF HLCGDVDYKG GYRHATFVDG LSIHHSFSRC bmy_18418T0/1-1416 SHVELKHMGQ QHLGRYPVHF HLCGDVDYKG GYRHATFVDG LSIHHSFSRC BACU009494/1-1371 SHVELKHMGQ QHLGRYPVHF HLCGDVDYKG GYRHATFVDG LSIHHSFSRC 601 650 ENSP00000366243/1-1383 ITVHGTNGLL IKDTIGFDTL GHCFFLEDGI EQRNTLFHNL GLLTKPGTLL ENSBTAP00000006709/1-1383 ITVHGTNGLL IKDTVGFDTL GHCFFLEDGI EQRNTLFHNL GLLTKPGTLL ENSTTRP00000005689/1-1382 ITVHGTNGLL IKDTIGFDTL GHCFFLEDGI EQRNTLFHNL GLLTKPGTLL bmy_18418T0/1-1416 ITVHGTNGLL IKDTIGFDTL GHCFFLEDGI EQRNTLFHNL GLLTKPGTLL BACU009494/1-1371 ITVHGTNGLL IKDTIGFDTL GHCFFLEDGI EQRNTLFHNL GLLTKPGTLL 651 700 ENSP00000366243/1-1383 PTDRNNSMCT TMRDKVFGNY IPVPATDCMA VSTFWIAHPN NNLINNAAAG ENSBTAP00000006709/1-1383 PTDRNNSMCI TMREKVFGNY IPVPATDCMA VSTFWIAHPN NNLINNAAAG ENSTTRP00000005689/1-1382 PTDRNNSMCT TMREKVFGNY IPVPATDCMA VSTFWIAHPN NNLINNAAAG bmy_18418T0/1-1416 PTDRNNSMCT TMREKVFGNY IPVPATDCMA VSTFWIAHPN NNLINNAAAG BACU009494/1-1371 PTDRNNSMCT TMREKVFGNY IPVPATDCMA VSTFWIAHPN NNLINNAAAG 701 750 ENSP00000366243/1-1383 SQDAGIWYLF HKEPTGESSG LQLLAKPELT PLGIFYNNRV HSNFKAGLFI ENSBTAP00000006709/1-1383 SQDAGIWYLF HKEPTGESSG LQLLAKPELT PLGIFYNNRV HSSFKAGLFI ENSTTRP00000005689/1-1382 SQDAGIWYLF HKEPTGESSG LQLLAKPELT PLGIFYNNRV HSSFKAGLFI bmy_18418T0/1-1416 SQDAGIWYLF HKEPTGESSG LQLLAKPELT PLGIFYNNRV HSSFKAGLFI BACU009494/1-1371 SQDAGIWYLF HKEPTGESSG LQLLAKPELT PLGIFYNNRV HSSFKAGLFI 751 800 ENSP00000366243/1-1383 DKGVKTTNSS AADPREYLCL DNSARFRPHQ DANPEKPRVA ALIDRLIAFK ENSBTAP00000006709/1-1383 DKGVKTTNAS AADPREYLCL DNSARFRPHQ DGDPEKPRVA ALIDRLIAFK ENSTTRP00000005689/1-1382 DKGVKTTNAS AADPREYLCL DNSARFRPHQ DADPEKPRVA ALIDRLIAFK bmy_18418T0/1-1416 DKGVKTTNAS AADPREYLCL DNSARFRPHQ DADPEKPRVA ALIDRLIAFK BACU009494/1-1371 DKGVKTTNAS AADPREYLCL DNSARFRPHQ DADPEKPRVA ALIDRLIAFK 801 850 ENSP00000366243/1-1383 NNDNGAWVRG GDIIVQNSAF ADNGIGLTFA SDGSFPSDEG SSQEVSESLF ENSBTAP00000006709/1-1383 NNDNGAWVRG GDIVVQNSAF ADNGIGLTFA SDGSFPSDEG SSQEVSESLF ENSTTRP00000005689/1-1382 NNDNGAWVRG GDIVVQNSAF ADNGIGLTFA XXXXXXXXXX XXXXXXXXLF bmy_18418T0/1-1416 NNDNGAWVRG GDIVVQNSAF ADNGIGLTFA SDGSFPSDEG SSQEVSESLF BACU009494/1-1371 NNDNGAWVRG GDIVVQNSA- ---------- -DGSFPSDEG SSQEVSESLF 851 900 ENSP00000366243/1-1383 VGESRNYGFQ GGQNKYVGTG GIDQKPRTLP RNRTFPIRGF QIYDGPIHLT ENSBTAP00000006709/1-1383 VGESRNYGFQ GGQNKYVGTG GIDLKPRTLP RNRTFPIRGF QIYDGPIHLT ENSTTRP00000005689/1-1382 IG-SRNYGFQ GGQNKYVGTG GIDQKPRTLP RNRTFPIRGF QIYDGPIHVT bmy_18418T0/1-1416 VGESRNYGFQ GGQNKYVGTG GIDQKPRTLP RN-----RGF QIYDGPIHVT BACU009494/1-1371 VGESRNYGFQ GGQNKYVGTG GIDQKPRTLP RNRTFPIRGF QIYDGPIHVT 901 950 ENSP00000366243/1-1383 RSTFKKYVPT PDRYSSAIGF LMKNSWQITP RNNISLVKFG PHVSLNVFFG ENSBTAP00000006709/1-1383 RCTFQKYVPT LDRYTSAIGF LMKNSWQITP RNNISFVKFG PHVSLNVFFG ENSTTRP00000005689/1-1382 RCTFKQYVPT PDRHTSAIGF LMKNSWQITP RNNISLVKFG PHVSLNVFFG bmy_18418T0/1-1416 RCTFKQYVPT PDRHTSAIGF LMKNSWQITP RNNISLVKFG PHVSLNVFFG BACU009494/1-1371 RCTFKQYVPT PDRHTSAIGF LMKNSWQITP RNNISLVKFG PHVSLNVFFG 951 1000 ENSP00000366243/1-1383 KPGPWFEDCE MDGDKNSIFH DIDGSVTGYK DAYVGRMDNY LIRHPSCVNV ENSBTAP00000006709/1-1383 KPGPWFEDCE LDGDKNSIFH DIDGSVTGYK DAYVGRMDNY LIRHPSCINV ENSTTRP00000005689/1-1382 KPGPWFEDCE LDGDKNSIFH DIDGSVTGYK DVYVGRIDNY LIRHPSCVNV bmy_18418T0/1-1416 KPGPWFEDCE LDGDKNSIFH DIDGSVTGYK DAYVGRIDNY LIRHPSCVNV BACU009494/1-1371 KPGPWFEDCE LDGDKNSIFH DIDGSVTGYK DAYVGRIDNY LIRHPSCVNV 1001 1050 ENSP00000366243/1-1383 SKWNAVICSG TYAQVYVQTW STQNLSMTIT RDEYPSNPMV LRGINQKAAF ENSBTAP00000006709/1-1383 TKWNAVVCSG SYAQVYVQTW STPNLTMTIT RDEYPDYPMV LRGINQKAAF ENSTTRP00000005689/1-1382 TKWNAVVCSG NYAQVYVQTW STQNLTMTIT RDEYPAYPMV LRGINQKATF bmy_18418T0/1-1416 TKWNAVVCSG NYAQVYVQTW STQNLTMTIT RDEYPAYPMV LRGINQKAAF BACU009494/1-1371 TKWNAVVCSG NYAQVYVQTW STQNLTMTIT RDEYPAYPMV LRGINQKATF 1051 1100 ENSP00000366243/1-1383 PQYQPVVMLE KGYTIHWNGP APRTTFLYLV NFNKNDWIRV GLCYPSNTSF ENSBTAP00000006709/1-1383 SQYQPVIMLE KGYTIHWNGP APKIAFLYLI NFNKNDWIRV GLCYPSNTSF ENSTTRP00000005689/1-1382 PQYQPVIMLE KGYTIHWNGP APKTAFLYLI NFNKNDWIRV GLCYPSNTSF bmy_18418T0/1-1416 PQYQPVIMLE KGYTIHWNGP APKTAFLYLI NFNKNDWIRV GLCYPSNTSF BACU009494/1-1371 PQYQPVIMLE KGYTIHWNGP APKTAFLYLI NFNKNDWIRV GLCYPSNTSF 1101 1150 ENSP00000366243/1-1383 QVTFGYLQRQ NGSLSKIEEY EPVHSLEELQ RKQSERKFYF DSSTGLLFLY ENSBTAP00000006709/1-1383 QVTFGFLQRH NGSLSKMEEY EPVHSLEELQ KKQSERKFYF DSSTGLLFLY ENSTTRP00000005689/1-1382 QVTFGFLQRH NGSLSKMEEY EPLHSLEELQ RKQSERKFYF DSSTGLLFLY bmy_18418T0/1-1416 QVTFGFLQRH NGSLSKMEEY EPLHSLEELQ RKQSERKFYF DSSTGLLFLY BACU009494/1-1371 QVTFGFLQRH NGSLSKMEEY EPLHSLEELQ RKQSERKFYF DSSTGLLFLY 1151 1200 ENSP00000366243/1-1383 LKAKSHRHGH SYCSSQGCER VKIQAATDSK DISNCMAKAY PQYYRKPSVV ENSBTAP00000006709/1-1383 LKAKSHRDGH SYCSSQGCER VKIQAATDSK DISNCMAKAY PRYYRKPSAL ENSTTRP00000005689/1-1382 LKAKSHRDGH SYCSSQGCER VKIQAATDSK DISNCMAKAY PQYYRRPSAL bmy_18418T0/1-1416 LKAKSHRDGH SYCSSQGCER VKIQAATDSK DISNCMAKAY PQYYRKPSAL BACU009494/1-1371 LKAKSHRDGH SYCSSQGCER VKIQAATDSK DISNCMAKAY PQYYRKPSAL 1201 1250 ENSP00000366243/1-1383 KRMPAMLTGL CQGCGTRQVV FTSDPHKSYL PVQFQSPDKA ETQRGDPSVI ENSBTAP00000006709/1-1383 KSMPSMLKGL CQGCGTRQVV FTSDPHISYL PVQFRSPSQA EIQRGDASVI ENSTTRP00000005689/1-1382 KPMPSMLKGL CQGCGTHQVV FTSDPHKSYL PVQFQSPSQA ETQRGDLSVI bmy_18418T0/1-1416 KPMPSMLKGL CQGCGTRQVV FTSDPHKSYL PVQFQSPSQA ETQRGDLSVI BACU009494/1-1371 KPMPSMLKGL CQGCGTRQVV FTSDPHKSYL PVQFQSPSQA ETQRGDLSVI 1251 1300 ENSP00000366243/1-1383 S--------- ---------- VNGTDFTFRS AGVLLLVVDP CSVPFRLTEK ENSBTAP00000006709/1-1383 S--------- ---------- INGTDFPLRS VGVLLLIVDA CSVPFRLTEK ENSTTRP00000005689/1-1382 S--------- ---------- INGTDFTFRS EGVFLLVVDA CSVPFRLMEK bmy_18418T0/1-1416 SVSTIWCVHC LSFSVLHFIL INGTDFTFRS EGVLLLIVDA CSVPFRLTEK BACU009494/1-1371 S--------- ---------- INGTDFTFRS EGVLLLIVDA CSVPFRLTEK 1301 1350 ENSP00000366243/1-1383 TVFPLADVSR IEEYLKTGIP PRSIVLLSTR GEIKQLNISH LLVPLGLAKP ENSBTAP00000006709/1-1383 KIFSFTDVSR MEEYLKTSIP PRSVVLLSTR GQIKQFNISD SLVPLGLAKP ENSTTRP00000005689/1-1382 KVFSFADVSL MEEYLKTSIP PRSIVLLSTR GEIKQLNISD SLVSLGLAKP bmy_18418T0/1-1416 KVFSFADVSL MEEYLKTSIP PRSIVLLSTR GEIKRLNISD SLVSLGLAKP BACU009494/1-1371 KVFSFADVSL MEEYLKTSIP PRSIVLLSTR GEIKQLNISD SLVSLGLAKP 1351 1400 ENSP00000366243/1-1383 AHLYDKGSTI FLGFSGNFKP SWTKLFTSPA GQGLGVLEQF IPLQLDEYGC ENSBTAP00000006709/1-1383 ANLYNKGSTI FLGFNGNFKP SWTKLYTSPA RQGLGLLEQF IPLQLDEYGC ENSTTRP00000005689/1-1382 AHLYNKGSTI FLGFSGNFKP SWTKLFTSPA REGLGLLEQF VPLQLDGYGC bmy_18418T0/1-1416 ANLYNKGSTI FLGFSGNFKP SWTKLFTSPA REGLGLLEQF IPLQLDGYGC BACU009494/1-1371 ANLYNKGSTI FLGFSGNFKP SWTKLFTSPA REGLGLLEQF VPLQLDGYGC 1401 1450 ENSP00000366243/1-1383 PRATTVRRRD LELLKQASKA H ENSBTAP00000006709/1-1383 HRADTIRRRD LELLKQTSKA H ENSTTRP00000005689/1-1382 PRAGTVRRRD LELLKQTSKA H bmy_18418T0/1-1416 PRAGTVRRRD LELLKQTSKA H BACU009494/1-1371 PRAGTVRRRD LELLKQTSKA H