KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:14 2014 Check: 00 .. Name: ENSTTRP00000002575/1-790 Len: 871 Check: 3684 Weight: 1.00 Name: bmy_11072T0/1-659 Len: 871 Check: 5520 Weight: 1.00 Name: BACU016549/1-796 Len: 871 Check: 4630 Weight: 1.00 Name: ENSP00000265022/1-791 Len: 871 Check: 9409 Weight: 1.00 Name: ENSBTAP00000006711/1-790 Len: 871 Check: 4147 Weight: 1.00 // 1 50 ENSTTRP00000002575/1-790 -------MSE E--RWVSLT- --------PE -EFGQLQKYA EX-----XXX bmy_11072T0/1-659 MPPATQPLPE EMPRWQGEGT GSR-----PG WRTGFLFDWE DLPNLKDSSK BACU016549/1-796 MAHQAPTHNH Q--RFLFLTS YPRSLRLSPS -INSQAFSFL PPPITPLPSA ENSP00000265022/1-791 -------MGE E--RWVSLT- --------PE -EFDQLQKYS EY-----SSK ENSBTAP00000006711/1-790 -------MSE D--RWVSLT- --------PE -EFGQLQKYA EY-----SSK 51 100 ENSTTRP00000002575/1-790 XXXXXXXXXX XXXXXXX--- --------XX XXXPISYDIF KLFMRAYLEV bmy_11072T0/1-659 KINDVLAEFN EGGSLKQ--- --------YD PHEPISYDVF KLFMRAYLEV BACU016549/1-796 SLAIASSPIL SSSLLPSVSS LLSTDFSIFI PSQPISYDVF KLFMRAYLEA ENSP00000265022/1-791 KIKDALTEFN EGGSLKQ--- --------YD PHEPISYDVF KLFMRAYLEV ENSBTAP00000006711/1-790 KIKYVLAEFN EGGSLKQ--- --------YG PHEPISYDVF KLFMKAYLEV 101 150 ENSTTRP00000002575/1-790 DLPQPLSTHL FLAFSQKPRQ ETPSHPKEGA SNSEASGPDS NIQNADNAAK bmy_11072T0/1-659 DLPQPLSTHL FLAFSQKPRQ ETPDHPKEGA SNSEASGPDS NIQNADNAAK BACU016549/1-796 DLPQPLSTHL FLAFSQKPRQ ETPDHPKEGA SNSEASGPDS NIQNADNAAK ENSP00000265022/1-791 DLPQPLSTHL FLAFSQKPRH ETSDHPTEGA SNSEANSADT NIQNADNATK ENSBTAP00000006711/1-790 DLPQPLSTHL FLAFSQKPRQ KTPEHPKEGA SNSEASGADS DIQNADNAAK 151 200 ENSTTRP00000002575/1-790 ADEACAPDM- ---------- ---------- ---------- ----ESKITE bmy_11072T0/1-659 ADEACAPDMD THKILVSTVK RMGQQRVSCL LNIVSLDAFL LPVTESKITE BACU016549/1-796 ADEACAPDM- ---------- ---------- ---------- ----ESKITE ENSP00000265022/1-791 ADEACAPDT- ---------- ---------- ---------- ----ESNMAE ENSBTAP00000006711/1-790 ADEACAPDM- ---------- ---------- ---------- ----ETKITE 201 250 ENSTTRP00000002575/1-790 KQVPTKDQVS ASPVGNHDAQ SSGSESPIVY LKDVMCYLSL LETGRPQDKL bmy_11072T0/1-659 KQVPTKDQVS ATPLGNHAAQ SSGSESPIVY LKDVMCYLSL LETGRPQDKL BACU016549/1-796 KQVPTKDQVS ATPLGNHAAQ SSGSESPIVY LKDVMCYLSL LETGRPQDKL ENSP00000265022/1-791 KQAPAEDQVA ATPLEPPVPR SSSSESPVVY LKDVVCYLSL LETGRPQDKL ENSBTAP00000006711/1-790 KQVPAKNQAA ATPVGNLVAP SSGSESPIVY LKDVVCYLSL LESGRPQDKL 251 300 ENSTTRP00000002575/1-790 EFMFRLYDSD ENGLLDQAEM DRIVNQMLHI AQYLEWDPTE LRPILKEMLQ bmy_11072T0/1-659 EFMFRLYDSD ENGLLDQAEM DRIVNQMLHI AQYLEWDPTE LRPILKEMLQ BACU016549/1-796 EFMFRLYDSD ENGLLDQAEM DRIVNQMLHI AQYLEWDPTE LRPILKEMLQ ENSP00000265022/1-791 EFMFRLYDSD ENGLLDQAEM DCIVNQMLHI AQYLEWDPTE LRPILKEMLQ ENSBTAP00000006711/1-790 EFMFRLYDSD ENGLLDQAEM DRIVSQMLHI AQYLEWDPTE LRPILKEMLQ 301 350 ENSTTRP00000002575/1-790 GMDYDRDGFV SLQEWVHGGM TTIPLLVLLG MDDSGSKGDG RHAWTMKHFK bmy_11072T0/1-659 GMDYDGDGLV SLQEWVHGGM TTIPLLVLLG MDDSGSKGDG RHAWTMKHFK BACU016549/1-796 GMDYDRDGLV SLQEWVHGGM TTIPLLVLLG MDDSGSKGDG RHAWTMKHFK ENSP00000265022/1-791 GMDYDRDGFV SLQEWVHGGM TTIPLLVLLG MDDSGSKGDG RHAWTMKHFK ENSBTAP00000006711/1-790 GMDYDRDGFV SLEEWVHGGM TTIPLLVLLG MDDSGSKGDG KHAWTLKHFK 351 400 ENSTTRP00000002575/1-790 KPTYCNFCHV MLMGARKQGL CCIYCKYTVH ERCVSKNIPG CIKTNSKTKR bmy_11072T0/1-659 KPTYCNFCHV MLMGVRKQGL CCIYCKYTVH ERCVSKNIPG CIKTNSKTKR BACU016549/1-796 KPTYCNFCHV MLMGVRKQGL CCIYCKYTVH ERCVSKNIPG CIKTNSKTKR ENSP00000265022/1-791 KPTYCNFCHI MLMGVRKQGL CCTYCKYTVH ERCVSRNIPG CVKTYSKAKR ENSBTAP00000006711/1-790 KPTYCNFCHV MLMGVRKQGL CCIYCKYTVH ERCVSKNIPA CIKTNSKTKR 401 450 ENSTTRP00000002575/1-790 GGEGTQHAWV EGNSSVKCDW CHKSINCYQS VTARHCLWCR MTFHRKCELS bmy_11072T0/1-659 GGEVMQHAWV EGNSSVKCDR CHKSIKCYQS VTARHCLWCQ MTFHRKCELS BACU016549/1-796 GGEVMQHAWV EGNSSVKCDR CHKSIKCYQS VTARHCLWCR MTFHRKCELS ENSP00000265022/1-791 SGEVMQHAWV EGNSSVKCDR CHKSIKCYQS VTARHCVWCR MTFHRKCELS ENSBTAP00000006711/1-790 GGEVMQHAWV EGNSSVKCDR CHKSIKCYQS VTARHCVWCR MTFHRKCELS 451 500 ENSTTRP00000002575/1-790 TLCDGGELRD HILLPTSICP ITRDRQDGKS DGSMSAKDEL VTQYKIIPTP bmy_11072T0/1-659 TLCDGGELRD HILLPTSIYP ITQDRQDGKS DGSMSAKDEL VTQDTVFPAS BACU016549/1-796 TLCDGGELRD HILLPTSICP ITQDRQDGKS DGSMSAKDEL VTQYKIIPTP ENSP00000265022/1-791 TLCDGGELRD HILLPTSICP ITRDRPGEKS DGCVSAKGEL VMQYKIIPTP ENSBTAP00000006711/1-790 TLCDGGELRD HILLPTSICP ITRDRPDGKS DGSVSAKGEL VMQYKIIPIP 501 550 ENSTTRP00000002575/1-790 GTHPLLVLVN PKSGGRQGER ILRKFHYLLN PKQVFNLDNG GPTPGLNFFR bmy_11072T0/1-659 G----VTFDN HTVGKWCEGR ILRKFHYLLN PKQVFNLDNG GPTPGLNFFR BACU016549/1-796 GTHPLLVLVN PKSGGRQGER ILRKFHYLLN PKQVFNLDNG GPTPGLNFFR ENSP00000265022/1-791 GTHPLLVLVN PKSGGRQGER ILRKFHYLLN PKQVFNLDNG GPTPGLNFFR ENSBTAP00000006711/1-790 GTHPLLVLVN PKSGGRQGER ILRKFHYLLN PKQVFNLDNG GPTPGLNFFR 551 600 ENSTTRP00000002575/1-790 DTPDFRVLAC GGDGTVGWIL DCIDKANFAK HPPVAVLPLG TGNDLARCLC bmy_11072T0/1-659 DTPDFRVLAC GGDGTVGWIL DCIDKANFAK HPPVAVLPLG TGNDLARCLR BACU016549/1-796 DTPDFRVLAC GGDGTVGWIL DCIDKANFAK HPPVAVLPLG TGNDLARCLR ENSP00000265022/1-791 DTPDFRVLAC GGDGTVGWIL DCIDKANFAK HPPVAVLPLG TGNDLARCLR ENSBTAP00000006711/1-790 DTPDFRVLAC GGDGTVGWIL DCIDKANFAK HPPVAVLPLG TGNDLARCLR 601 650 ENSTTRP00000002575/1-790 WGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11072T0/1-659 WGGGYEGGSL TKILKDIEQS PLVMLDRWHL EVIPREEVEN GDQVPYNIMN BACU016549/1-796 WGGGYEGGSL TKILKDIEQS PLVMLDRWHL EVIPREEVEN GDQVPYNIMN ENSP00000265022/1-791 WGGGYEGGSL TKILKDIEQS PLVMLDRWHL EVIPREEVEN GDQVPYSIMN ENSBTAP00000006711/1-790 WGGGYEGGSL TKILKDIEQS PLVMLDRWHL EVIPREEVEN GDQVPYNIMN 651 700 ENSTTRP00000002575/1-790 XXXXXXX--- -------DAS IAHRFHVMRE KHPEKFNSRM KNKLWYFEFG bmy_11072T0/1-659 NYFSIGV--- -------DAS IAHRFHVMRE KHPEKFNSR- ---------- BACU016549/1-796 NYFSIGVGSA FCPFAFQDAS IAHRFHVMRE KHPEKFNSRM KNKLWYFEFG ENSP00000265022/1-791 NYFSIGV--- -------DAS IAHRFHVMRE KHPEKFNSRM KNKLWYFEFG ENSBTAP00000006711/1-790 NYFSIGV--- -------DAS IAHRFHVMRE KHPEKFNSRM KNKLWYFEFG 701 750 ENSTTRP00000002575/1-790 TSETFAATCK KLHDHIELEC DGVGVDLSGI FLEGIAILNI PSMYGGTNLW bmy_11072T0/1-659 ---------- ---------- ---------- ---------- ---------- BACU016549/1-796 TSETFAATCK KLHDHIELEC DGVGVDLSSI FLEGIAILNI PSMYGGTNLW ENSP00000265022/1-791 TSETFAATCK KLHDHIELEC DGVGVDLSNI FLEGIAILNI PSMYGGTNLW ENSBTAP00000006711/1-790 TSETFAATCK KLHDHIELEC DGVGVDLSSI FLEGIAILNI PSMYGGTNLW 751 800 ENSTTRP00000002575/1-790 GETKKNRAVI RESRKVVTDP KELKFC-QDL SDQLLEVVGL EGAMEMGQIY bmy_11072T0/1-659 ---------- ---------- ---------- ---------- ---------- BACU016549/1-796 GETKKNRAVI RESRKVVTDP KELKFCVQDL SDQLLEVVGL EGAMEMGQIY ENSP00000265022/1-791 GENKKNRAVI RESRKGVTDP KELKFCVQDL SDQLLEVVGL EGAMEMGQIY ENSBTAP00000006711/1-790 GETKKNRAVI RESRKVITDP KELKFCVQDL SDQLLEVVGL EGAMEMGQIY 801 850 ENSTTRP00000002575/1-790 TGLKSAGRRL AQCSSVSIRT NKLLPMQVDG EPWMQPPCTI KITHKNQAPM bmy_11072T0/1-659 ---------- ---------- ---------- ---------- ---------- BACU016549/1-796 TGLKSAGRRL AQCSSVSIRY ASSSP----- ---------- ------SSPP ENSP00000265022/1-791 TGLKSAGRRL AQCASVTIRT NKLLPMQVDG EPWMQPCCTI KITHKNQAPM ENSBTAP00000006711/1-790 TGLKSAGRRL AQCSSVSIRT NKLLP-QVDG EPWMQPPCSI KITHKNQAPM 851 900 ENSTTRP00000002575/1-790 MMGPPQKSSF FSLRRKSRSK D bmy_11072T0/1-659 ---------- ---------- - BACU016549/1-796 VSPPP----- ---------- - ENSP00000265022/1-791 MMGPPQKSSF FSLRRKSRSK D ENSBTAP00000006711/1-790 MMGPPQKSSF FSLRRKSRSK D