KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:15 2014 Check: 00 .. Name: BACU002042/1-387 Len: 393 Check: 2428 Weight: 1.00 Name: ENSP00000230461/1-361 Len: 393 Check: 950 Weight: 1.00 Name: ENSBTAP00000006718/1-361 Len: 393 Check: 3610 Weight: 1.00 Name: bmy_07889T0/1-294 Len: 393 Check: 6973 Weight: 1.00 Name: ENSTTRP00000007452/1-283 Len: 393 Check: 2669 Weight: 1.00 // 1 50 BACU002042/1-387 MAMNYNAKDE VDGGPPCAPG GTAKNRRPDN TAFKQQRLPA WQPILTAGTV ENSP00000230461/1-361 MAMNYNAKDE VDGGPPCAPG GTAKTRRPDN TAFKQQRLPA WQPILTAGTV ENSBTAP00000006718/1-361 MAMNYNAKDE VDGGPPCPPG GTAKTRRPDN TAFKQQRLPA WQPILTAGTV bmy_07889T0/1-294 --INSLVWNQ FKG------- ---------- ---------- ---------- ENSTTRP00000007452/1-283 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002042/1-387 LPTFFIIGLI FIPIGIGIFV TSNNIREIEI DYTGTDPASP CNKCLSPNVT ENSP00000230461/1-361 LPIFFIIGLI FIPIGIGIFV TSNNIREIEI DYTGTEPSSP CNKCLSPDVT ENSBTAP00000006718/1-361 LPTFFIIGLI FIPIGIGIFV TSNNIREIEI DYTGTDPSSP CNKCLSPNVT bmy_07889T0/1-294 ---------- ---------- ---------I DYTGTDPASP CNKCLSPNVT ENSTTRP00000007452/1-283 ---------- ---------- ---------I DYTGTDPSSP CNKCLSPNVT 101 150 BACU002042/1-387 PCICTINFTL EQSFEGNVFM YYGLSNFYQN HRRYVKSRDD SQLNGDPSAL ENSP00000230461/1-361 PCFCTINFTL EKSFEGNVFM YYGLSNFYQN HRRYVKSRDD SQLNGDSSAL ENSBTAP00000006718/1-361 PCVCTINFTL EQSFEGNVFM YYGLSNFYQN HRRYVKSRDD GQLNGDPSAL bmy_07889T0/1-294 PCICTINFTL EQSFEGNVFM YYGLSNFYQN HRRYVKSRDD SQLNGDPSAL ENSTTRP00000007452/1-283 PCICTINFTL EQSFEGNVFM YYGLSNFYQN HRRYVKSRDD SQLNGDPSAL 151 200 BACU002042/1-387 LNPSKECEPY RRNEDKPIAP CGAIANSMFN DTLDLFLVGN ESDPTPIPLK ENSP00000230461/1-361 LNPSKECEPY RRNEDKPIAP CGAIANSMFN DTLELFLIGN DSYPIPIALK ENSBTAP00000006718/1-361 LNPSKECEPY RRNEDKPIAP CGAIANSMFN DTLELFQVGN ASDLTPIPLK bmy_07889T0/1-294 LNPSKECEPY RRNEDKPIAP CGAIANSMFN DTLDLFLVGN ESDPTPIPLK ENSTTRP00000007452/1-283 LNPSKECEPY RRNEDKPIAP CGAIANSMFN DTLDLFLVGN ESDPTPIHLI 201 250 BACU002042/1-387 KKGIAWWTDK NVKFRNPPGA DIPLEERFKG TTKPVNWVKP VYMLDPDEDN ENSP00000230461/1-361 KKGIAWWTDK NVKFRNPPGG D-NLEERFKG TTKPVNWLKP VYMLDSDPDN ENSBTAP00000006718/1-361 KKGIAWWTDK NVKFRNPPGT D-PLEERFKG TTKPVNWVKP VYMLDSDEDN bmy_07889T0/1-294 KKGIAWWTDK NVKFRNPPGA DIPLEERFKG TTKPVNWVKP VYMLDPDEDN ENSTTRP00000007452/1-283 KKGIAWWTDK NVKFRNPPGA DIPLEERFKG TTKPVNWVKP VYMLDPDEDN 251 300 BACU002042/1-387 SGFINEDFIV WMRTAALPTF LYFLGYIIGG EGFSRSLQI- EFVLVKKDCH ENSP00000230461/1-361 NGFINEDFIV WMRTAALPTF RKLYRLIERK SDLHPTLPAG RYSLNVTYNY ENSBTAP00000006718/1-361 NGFINEDFIV WMRTAALPTF RKLYRLIERK NDLHPTLPAG RYYLNITYNY bmy_07889T0/1-294 SGFINEDFIV WMRTAALPTF RKLYRLIERK NDLHPTLPAG RYYLNITYNY ENSTTRP00000007452/1-283 SGFINEDFIV WMRTAALPTF RKLYRLIERK SDLHPTLPAG RYYLNITYNY 301 350 BACU002042/1-387 PASLFLTGGP EALRQIAQRT IS-TASRRQF ENKVPEKQKL FQEDNGIPVH ENSP00000230461/1-361 PVHYF----- DGRKRMILST ISWMGGKNPF L--------- -----GIAYI ENSBTAP00000006718/1-361 PVHSF----- DGRKRMILST ISWMGGKNPF L--------- -----GIAYI bmy_07889T0/1-294 PVHSF----- DGRKRMILST ISWMGGKNPF L--------- -----GIAYI ENSTTRP00000007452/1-283 PVHSF----- DGRKRMILST ISWMGGKNPF L--------- -----GIAYI 351 400 BACU002042/1-387 LKGGVADALL YRTTMILTVA GTAY----AI YQLAVASFPK KQG ENSP00000230461/1-361 AVGSIS---- FLLGVVLLVI NHKYRNSSNT ADITI----- --- ENSBTAP00000006718/1-361 TIGSIS---- FLLGVVLLVI NHKYRNSSNT ADITI----- --- bmy_07889T0/1-294 AIGSIS---- FLLGVVLLVI NHKYRNSSNT ADITI----- --- ENSTTRP00000007452/1-283 TIGSIS---- FLLGVVLLVI NHKYRNSSNT ADITI----- ---