KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:16 2014 Check: 00 .. Name: ENSTTRP00000012041/1-751 Len: 814 Check: 1697 Weight: 1.00 Name: ENSP00000400958/1-751 Len: 814 Check: 6675 Weight: 1.00 Name: BACU012290/1-576 Len: 814 Check: 3781 Weight: 1.00 Name: bmy_04347T0/1-758 Len: 814 Check: 528 Weight: 1.00 Name: ENSBTAP00000006730/1-751 Len: 814 Check: 7674 Weight: 1.00 // 1 50 ENSTTRP00000012041/1-751 MASKVTDAIV WYQKKIGAYD QQIWEKSVEQ REIKYVEYGL RNKPKKTAHV ENSP00000400958/1-751 MASKVTDAIV WYQKKIGAYD QQIWEKSVEQ REIKFIKLGL RNKPKKTAHV BACU012290/1-576 -----MRTLK IYSLISTTFN ---------- -----ILQGL RNKPKKTAHV bmy_04347T0/1-758 --------MT WTQ------- ---------- ---------- ---------- ENSBTAP00000006730/1-751 MASKVTDAIV WYQKKIGAYD QQIWEKSVEQ REIKFIKLGL RNKPKKTAHV 51 100 ENSTTRP00000012041/1-751 KPDLIDVDLV RGSAFAKAKP ESPWTSLTRK GIVRVVFFPF FFRWWLQVTS ENSP00000400958/1-751 KPDLIDVDLV RGSAFAKAKP ESPWTSLTRK GIVRVVFFPF FFRWWLQVTS BACU012290/1-576 KPDLIDVDLV R--------- ---------- ---------- ---------- bmy_04347T0/1-758 ------IELL KRSAFAKAKP ESPWTSLTRK GIVRVVFFPF FFRWWLQVTS ENSBTAP00000006730/1-751 KPDLIDVDLV RGSAFAKAKP ESPWTSLTRK GIVRVVFFPF FFRWWLQVTS 101 150 ENSTTRP00000012041/1-751 KVIFFWLLVL YLLQVAAIVL FCSASSPHSI PLTEVIGPIW LMLLLGTVHC ENSP00000400958/1-751 KVIFFWLLVL YLLQVAAIVL FCSTSSPHSI PLTEVIGPIW LMLLLGTVHC BACU012290/1-576 ---------- ----VAAIVL FCSASSSHSI PLTEVIGPIW LMLLLGTVHC bmy_04347T0/1-758 KVIFFWLLVL YLLQVAAIVL FCSASSPHSI PLTEVIGPIW LMLLLGTVHC ENSBTAP00000006730/1-751 KVIFFWLLVL YLLQVAAIVL FCSASSPHSI PLTEVTEPIW LMLLLGTVHC 151 200 ENSTTRP00000012041/1-751 QIVSTRTPKP PLSTGGKRRR KLRKAAHLEV HREGDGSSTT DNTQEGAVQS ENSP00000400958/1-751 QIVSTRTPKP PLSTGGKRRR KLRKAAHLEV HREGDGSSTT DNTQEGAVQN BACU012290/1-576 QIVSTRTPKP PLSTGGKRRR ---------- ---------- ---------- bmy_04347T0/1-758 QIVSTRTPKP PLSTGGKRRR KLRKAAHLEV HREGDGSSTT DNTQEGAVQS ENSBTAP00000006730/1-751 QIVSTRTPKP PLSTGGKRRR KLRKAAHLEV HREGDGSSTT DNTQEGAVQS 201 250 ENSTTRP00000012041/1-751 YGTSTAYSVG AVFRDLWHAA FFLSG----- ---------- --------AK ENSP00000400958/1-751 HGTSTSHSVG TVFRDLWHAA FFLSG----- ---------- --------SK BACU012290/1-576 ---------- ---------- ---------- ---------- --------SK bmy_04347T0/1-758 HGTSTAYSVG AVFRDLWHAA FFLSGFVFIQ DFIWHRNALS LFWHSSLRSK ENSBTAP00000006730/1-751 HGTSTSYSVG AVFRDLWHAA FFLSG----- ---------- --------SK 251 300 ENSTTRP00000012041/1-751 KAKNSIDKST ETDNGYVSLD GKKTVKSSED GVQSHEPQCE TLRAEEATWN ENSP00000400958/1-751 KAKNSIDKST ETDNGYVSLD GKKTVKSGED GIQNHEPQCE TIRPEETAWN BACU012290/1-576 KAKNSIDKST ETDNGYVSLD GKKTVKSSED GVQSHEPQCE TLRPEEATWN bmy_04347T0/1-758 KAKNSIDKST ETDNGYVSLD GKKTVKSSED GVQSHEPQCE TLRPEEATWN ENSBTAP00000006730/1-751 KAKNSIDKST ETDNGYVSLD GKKTVKSSED GIQSHEPQCE TLQPEEATWN 301 350 ENSTTRP00000012041/1-751 TGTLRNIPSK DTQRTVTNVS DEVSSEEGPE TGYLLRRHAD RTSESILRNR ENSP00000400958/1-751 TGTLRNGPSK DTQRTITNVS DEVSSEEGPE TGYSLRRHVD RTSEGVLRNR BACU012290/1-576 TGTLRNIPSK DTQRTVTNVS DEVSSEEGPE TGYPLRRHAD RTSESILRNR bmy_04347T0/1-758 TGTLRNIPSK DTQRTVTNVS DEVSSEEGPE TGYPLRRHAD RTSESILRNR ENSBTAP00000006730/1-751 TGTLRNIPSK DTQRTVTNVS DEVSSEEGPE TGYPLRRHAD RTSESILRNR 351 400 ENSTTRP00000012041/1-751 KSHHYKKHYP NEDAPKSGTS CSSRCSSSRQ DSESTRPESE TEDVLWEDLL ENSP00000400958/1-751 KSHHYKKHYP NEDAPKSGTS CSSRCSSSRQ DSESARPESE TEDVLWEDLL BACU012290/1-576 KSHHYKKHYP NEDAPKSGTS CSSRCSSSRQ DSESTRPESE TEDVLWEDLL bmy_04347T0/1-758 KSHHYKKHYP NEDAPKSGTS CSSRCSSSRQ DSESTRPESE TEDVLWEDLL ENSBTAP00000006730/1-751 KSHHYKKHYP NEDAPKSGTS CSSRCSSSRQ DSESTRPESE TEDVLWEDLL 401 450 ENSTTRP00000012041/1-751 HCAECRSSCT SETDVENPQI NPCVKKEYRD DPFHQXXLPW LHSSHPGLEK ENSP00000400958/1-751 HCAECHSSCT SETDVENHQI NPCVKKEYRD DPFHQSHLPW LHSSHPGLEK BACU012290/1-576 HCAECRSSCT SETDVENPQI NPCVKKEYRD DPFHQSHLPW LHSSHPGLEK bmy_04347T0/1-758 HCAECRSSCT SETDVENPQI NPCVKKEYRD DPFHQSHLPW LHSSHPGLEK ENSBTAP00000006730/1-751 HCAECRSSCT SETDVENPQI NPCVKKEYRD DPFHQSHLPW LHSSHPGLEK 451 500 ENSTTRP00000012041/1-751 ISAIVWEGND CKKADMSVLE ISGMIMNRVN SHIPGIGYQI FGNAISLILG ENSP00000400958/1-751 ISAIVWEGND CKKADMSVLE ISGMIMNRVN SHIPGIGYQI FGNAVSLILG BACU012290/1-576 ISAIVWEGND CKKADMSVLE ISGMIMNRVN SHIPGIGYQI FGNAISLILG bmy_04347T0/1-758 ISAIVWEGND CKKADMSVLE ISGMIMNRVN SHIPGIGYQI FGNAISLILG ENSBTAP00000006730/1-751 ISAIVWEGND CKKADMSVLE ISGMIMNRVN SHIPGIGYQI FGNAISLILG 501 550 ENSTTRP00000012041/1-751 LTPFVFRLSQ ATDLDQLTAH SASELYVIAF GSNEDVIVLS MVIISFVVRV ENSP00000400958/1-751 LTPFVFRLSQ ATDLEQLTAH SASELYVIAF GSNEDVIVLS MVIISFVVRV BACU012290/1-576 LTPFVFRLSQ ATDLDQLTAH SASELYVIAF GSNEDVIVLS MVIISFVVRV bmy_04347T0/1-758 LTPFVFRLSQ ATDLDQLTAH SASELYVIAF GSNEDVIVLS MVIISFVVRV ENSBTAP00000006730/1-751 LTPFVFRLSQ ATDLDQLTAH SASELYVIAF GSNEDVIVLS MVIISFVVRV 551 600 ENSTTRP00000012041/1-751 SLVWIFFFLL CVAERTYKQR LLFAKLFGHL TSARRARKSE VPHFRLKKVQ ENSP00000400958/1-751 SLVWIFFFLL CVAERTYKQR LLFAKLFGHL TSARRARKSE VPHFRLKKVQ BACU012290/1-576 SLVWIFFFLL CVAERTYKQR LLFAKLFGHL TSARRARKSE VPHFRLKKVQ bmy_04347T0/1-758 SLVWIFFFLL CVAERTYKQR LLFAKLFGHL TSARRARKSE VPHFRLKKVQ ENSBTAP00000006730/1-751 SLVWIFFFLL CVAERTYKQR LLFAKLFGHL TSARRARKSE VPHFRLKKVQ 601 650 ENSTTRP00000012041/1-751 NIKMWLSLRS YLKXXXXXXX XXXXXXXXSF LTISVVFICC AQLLHVHEIF ENSP00000400958/1-751 NIKMWLSLRS YLKRRGPQRS VDVIVSSAFL LTISVVFICC AQLLHVHEIF BACU012290/1-576 NIKMWLSLRS YLKRRGPQRS VDVIVSSAFL LTISVVFICC A--------- bmy_04347T0/1-758 NIKMWLSLRS YLKRRGPQRS VDVIVSSAFL LTISVVFICC AQLLHVHEIF ENSBTAP00000006730/1-751 NIKMWLSLRS YLKRRGPQRS VDVIVSSAFL LTISVVFICC AQLLHVHEIF 651 700 ENSTTRP00000012041/1-751 LDCHYNWELV IWCISLTLFL LRFVTLGSET SKKYSNTSIL LTEQINLYLK ENSP00000400958/1-751 LDCHYNWELV IWCISLTLFL LRFVTLGSET SKKYSNTSIL LTEQINLYLK BACU012290/1-576 ---------- ---------- ---------- ---------- ---QINLYLK bmy_04347T0/1-758 LDCHYNWELV IWCISLTLFL LRFVTLGSET SKKYSNTSIL LTEQINLYLK ENSBTAP00000006730/1-751 LDCHYNWELV IWCISLTLFL LRFVTLGSET SKKYSNTSIL LTEQINLYLK 701 750 ENSTTRP00000012041/1-751 MEKKPNKKEE LTLVNNVLKL ATKLLKELDS PFRLYGLTMN PLLYNITQVV ENSP00000400958/1-751 MEKKPNKKEE LTLVNNVLKL ATKLLKELDS PFRLYGLTMN PLLYNITQVV BACU012290/1-576 MEKKPNKKEE LTLVNNVLKL ATKLLKELDS PFRLYGLTMN PLLYNITQVV bmy_04347T0/1-758 MEKKPNKKEE LTLVNNVLKL ATKLLKELDS PFRLYGLTMN PLLYNITQVV ENSBTAP00000006730/1-751 MEKKPNKKEE LTLVNNVLKL ATKLLKELDS PFRLYGLTMN PLLYNITQVV 751 800 ENSTTRP00000012041/1-751 ILSAVSGVIS DLLGFNLKLW ---------- ---------- ---------- ENSP00000400958/1-751 ILSAVSGVIS DLLGFNLKLW ---------- ---------- ---------- BACU012290/1-576 ILSAVSGVIS DLLGFNLKAF ---------- ---------- ---------- bmy_04347T0/1-758 ILSAVSGVIS DLLGFNLKIL IKVLHGLHDF LLSATKKSDS LISVQGRSLL ENSBTAP00000006730/1-751 ILSAVSGVIS DLLGFNLKLW ---------- ---------- ---------- 801 850 ENSTTRP00000012041/1-751 -----KIKS- ---- ENSP00000400958/1-751 -----KIKS- ---- BACU012290/1-576 -----KKDST NAYQ bmy_04347T0/1-758 SSGIPEIRA- ---- ENSBTAP00000006730/1-751 -----KIKS- ----