KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:30:17 2014 Check: 00 .. Name: ENSP00000238256/1-1219 Len: 1246 Check: 3976 Weight: 1.00 Name: ENSBTAP00000006746/1-1194 Len: 1246 Check: 7579 Weight: 1.00 Name: BACU007327/1-1165 Len: 1246 Check: 6825 Weight: 1.00 Name: bmy_05196T0/1-1192 Len: 1246 Check: 1052 Weight: 1.00 Name: ENSTTRP00000003040/1-1214 Len: 1246 Check: 2368 Weight: 1.00 // 1 50 ENSP00000238256/1-1219 ---------- ---------M FGAGDEDDTD FLSPSGG-AR LASLFGLDQA ENSBTAP00000006746/1-1194 ---------- ---------M FGAGDEDDTD FLSPSGGSTR LASLFGLDQA BACU007327/1-1165 ---------- ---------- ----MSNEMS FSFSTNS-TR LASLFGLDQA bmy_05196T0/1-1192 ---------- ---------M FGAGDEEDTD FLSPSGG-TR LASLFGLDQA ENSTTRP00000003040/1-1214 GGERLWNPRL LSSGAKGCGM FGAGDEEDTD FLSPSGG-TR LASLFGLDQA 51 100 ENSP00000238256/1-1219 AAGHGNEFFQ YTAPKQPKKG QGTAATGNQA TPKTAPATMS TPTILVATAV ENSBTAP00000006746/1-1194 AAGHGNEFFQ YTAPKQPKKG QGTAPTGNQG TPKTAPTTTG TSTLLVATAV BACU007327/1-1165 AAGHGNEFFH YTAPKQPKKG QGTAPTGNQA TPKTAPATAG TSTVLVATAV bmy_05196T0/1-1192 AAGHGNEFFH YTAPKQPKKG QGTAPTGNQA TPKTAPTTAG TSTVLVATAV ENSTTRP00000003040/1-1214 AAGHGNEFFH YTAPKQPKKG QGTAPTGNQA TPKTAPTTTG TSTVLVATAV 101 150 ENSP00000238256/1-1219 HAYRYTNGQY VKQGKFGAAV LGNHTAREYR ILLYISQQQP VTVARIHVNF ENSBTAP00000006746/1-1194 HAYRYTNGQY VKQGKFGAAV LGNHTTREYS ILLYISQQQP VTVARIHLNF BACU007327/1-1165 HAYRYTNGQY VKQGKFGAAV LGNHTARE-- ---------- ---------- bmy_05196T0/1-1192 HAYRYTNGQY VKQGKFGAAV LGNHTAREYR ILLYISQQQP VTVARIHLNF ENSTTRP00000003040/1-1214 HAYRYTNGQY VKQGKFGAAV LGNHTAREYR ILLYISQQQP VTVARIHLNF 151 200 ENSP00000238256/1-1219 ELMVRPNNYS TFYDDQRQNW SIMFESEKAA VEFNKQVCIA KCNSTSSLDA ENSBTAP00000006746/1-1194 ELMVRPNNYS TFYDDQRQNW SIMFESEKAA VEFNKQVCIA KCNSTSSLNS BACU007327/1-1165 ---VRPNNYS TFYDDQRQNW SIMFESEKAA VEFNKQVCIA KCNSTSSLDS bmy_05196T0/1-1192 ELMVRPNNYS TFYDDQRQNW SIMFESEKAA VEFNKQVCIA KCNSTSSLDS ENSTTRP00000003040/1-1214 ELMVRPNNYS TFYDDQRQNW SIMFESEKAA VEFNKQVCIA KCNSTSSLDS 201 250 ENSP00000238256/1-1219 VLSQDLIVAD GPAVEVGDSL EVAYTGWLFQ NHVLGQVFDS TANKDKLLRL ENSBTAP00000006746/1-1194 VLSQDLMVVE GPAVEVGDSL EVAYTSWLFQ NHVLGQVFDS TANKDKLLRL BACU007327/1-1165 VLSQDLIVVE GPAVEVGDSL ELAYTSWLFQ NQGLGQVFDS TANKDKLLRL bmy_05196T0/1-1192 VLSQDLIVVE GPAVEVGDSL ELAYTSWLFQ NHGLGQVFDS TANKDKLLRL ENSTTRP00000003040/1-1214 VLSQDLIVVE GPAVEVGDSL EVAYTSWLFQ NHGLGQVFDS TANKDKLLRL 251 300 ENSP00000238256/1-1219 KLGSGKVIKG WEDGMLGMKK GGKRLLIVPP ACAVGSEGVI GWTQATDSIL ENSBTAP00000006746/1-1194 KLGSGKVIKS WEDGMVGMRK GGKRLLIIPP ACAAGSEGVI GWTPSTDSIL BACU007327/1-1165 KVGSGKVIKS WEDGMVGMKK GGKRLLIIPP ACAAGSEGVI GWTPSTDSIL bmy_05196T0/1-1192 KLGSGKVIKS WEDGMVGMKK GGKRLLIIPP ACAAGSEGVI GWTPSTDSIL ENSTTRP00000003040/1-1214 KLGSGKVIKS WEDGMVGMRK GGKRLLIIPP ACAAGSEGVI GWTPSTDSIL 301 350 ENSP00000238256/1-1219 VFEVEVRRVK FARDSGSDGH SVSSRDSAAP SPIPGADNLS ADPVVSPPTS ENSBTAP00000006746/1-1194 VFEVEIRRVR FARDSGSDGH SVSSRDSAAP SPIPPADSIS ADPVVSPSTS BACU007327/1-1165 VFEVEIRRVK FARDSGSDGH SVSSRDSAAP SPIPGADNLS ADPVVSPSTS bmy_05196T0/1-1192 VFEVEIRRVK FARDSGSDGH SVSSRDSAAP SPIPGADNLS ADPVVSPSTS ENSTTRP00000003040/1-1214 VFEVEIRRVK FARDSGSDGH SVSSRDSAAP SPIPGADSLS ADPVMSPPTS 351 400 ENSP00000238256/1-1219 IPFKSGEPAL RTKSNSLSEQ LAINTSPDAV KAKLISRMAK MGQPMLPILP ENSBTAP00000006746/1-1194 VPFRSGESAL RSKSNSLSEH LTVNTNPDTV KAKLISRMAK MGQPMLPILP BACU007327/1-1165 VPFKSGESVL RSKSNSLSEQ LTVNTNPDTV KAKLISRMAK MGQPMLPILP bmy_05196T0/1-1192 VPFKSGESVL RSKSNSLSEQ LTVNTNPDTV KAKLISRMAK MGQPMLPILP ENSTTRP00000003040/1-1214 VPFKSGESVL RSKSNSLSEQ LTVNTNPDTV KAKLISRMAK MGQPMLPILP 401 450 ENSP00000238256/1-1219 PQLDSNDSEI EDVNTLQGGG QPVVTPSVQP SLHPAHPALP QMTSQAPQPS ENSBTAP00000006746/1-1194 PQLDSNDSEI EDVNAPRGAG QPLATPSVQP SLQPAHPVLP QMTSQAPQPS BACU007327/1-1165 PQLDSNDSEI EDVNALRGAG QPVVTPSIQP SLQPAHPVLP QMTSQAPQPS bmy_05196T0/1-1192 PQLDSNDSEI EDVNALRGAG QPMVTPSIQL SLQPAHPVLP QMTSQAPQPS ENSTTRP00000003040/1-1214 PQLDSNDSEI EDVNALRGAG QPMVTPSIQP SLQPAHPVLP QMTSQAPQPS 451 500 ENSP00000238256/1-1219 VTGLQAPSAA LMQVSSLDSH SAVSGNAQSF QPYAGMQAYA YPQASAVTSQ ENSBTAP00000006746/1-1194 VSRLQTPSAA LMQVASLDSH SAVSGNAQSF QPYAGVQAYA YPQAPAVASQ BACU007327/1-1165 VSGLQTPSAA LMQVASHDSH SAVSGNAQSF QPYTGMQAYA YPQAPAVASQ bmy_05196T0/1-1192 VSGLQTPSAA LMQVASHDSH SAVSGNAQSF QPYTGMQAYA YPQAAAVASQ ENSTTRP00000003040/1-1214 VSGLQTPSAA LMQVASHDSH SAVSGNAQSF QPYTGMQAYA YPQAPAVASQ 501 550 ENSP00000238256/1-1219 LQPVRPLYPA PLSQPPHFQG SGDMASFLMT EARQHNTEIR MAVSKVADKM ENSBTAP00000006746/1-1194 LQPLRPLYPA PLSQPPHFQG SGDVASFLMT EARQHNTEIR MAVSKVADKM BACU007327/1-1165 LQPVRPLYPA PLSQSPHFQG SGDMASFLMT EARQHNTEIR MAVSKVADKM bmy_05196T0/1-1192 LQPVRPLYPA PLSQSPHFQG SGDMASFLMT EARQHNTEIR MAVSKVADKM ENSTTRP00000003040/1-1214 LQPIRPLYPA PLSQSPHFQG SGDMASFLMT EARQHNTEIR MAVSKVADKM 551 600 ENSP00000238256/1-1219 DHLMTKVEEL QKHSAGNSML IPSMSVTMET SMIMSNIQRI IQENERLKQE ENSBTAP00000006746/1-1194 DHLMTKVEEL QKHSAGNSLL IPSMSVTMET SMIMSNIQRI IQENERLKQE BACU007327/1-1165 DHLMTKVEEL QKHSTGNSLL IPSMSVTMET SMIMSNIQRI IQENERLKQE bmy_05196T0/1-1192 DHLMTKVEEL QKRSTGNSLL IPSMSVTMET SMIMSNIQRI IQENERLKQE ENSTTRP00000003040/1-1214 DHLMTKVEEL QKHTTGNSLL IPSMSVTMET SMIMSNIQRI MQENERLKQE 601 650 ENSP00000238256/1-1219 ILEKSNRIEE QNDKISELIE RNQRYVEQSN LMMEKRNNSL QTATENTQAR ENSBTAP00000006746/1-1194 ILEKSSRIEE QNDKISELIE RNQRYVEQSN LMMEKRNNSL QTATENTQAR BACU007327/1-1165 ILEKSSRIEE QNDKISELIE RNQRYVEQSN LMMEKRNNSL QTATENTQAR bmy_05196T0/1-1192 ILEKSSRIEE QNDKISELIE RNQRYVEQSN LMMEKRNNSL QTATENTQAR ENSTTRP00000003040/1-1214 ILEKSSRIEE QNDKISELIE RNQRYVEQSN LMMEKRNNSL QTATENTQAR 651 700 ENSP00000238256/1-1219 VLHAEQEKAK VTEELAAATA QVSHLQLKMT AHQKKETELQ MQLTESLKET ENSBTAP00000006746/1-1194 VLHAEQEKAK VTEELAAATA QVSHLHLKMT AHQKKETELQ VQLTESMKET BACU007327/1-1165 VLHAEQEKAK VTEELAAATA QVSHLHLKMT AHQKKETELQ VQLTESMKET bmy_05196T0/1-1192 VLHAEQEKAK VTEELAAATA QVSHLHLKMT AHQKKETELQ VQLTESMKQT ENSTTRP00000003040/1-1214 VLHAEQEKAK VTEELAAATA QVSHLHLKMT AHQKKETELQ VQLTESMKET 701 750 ENSP00000238256/1-1219 DLLRGQLTKV QAKLSELQET SEQAQSKFKS EKQNRKQLEL KVTSLEEELT ENSBTAP00000006746/1-1194 DLLRGQLAQL QAELSEVQET SQQVQSKLKS EKQSRRQLEL RVTSLEEELT BACU007327/1-1165 DLLRGQLAKL QAEFSELQET SEQAQSKFKS EKQSRRQLEL RVTSLEEELT bmy_05196T0/1-1192 DLLRGQLAKL QAELSELQET SEQAQSKFKS EKQSRRQLEL RVTSLEEELT ENSTTRP00000003040/1-1214 DLLRGQVAKL QAELSELQET SEQAQSKFKS EKQSRRQLEL RVTSLEEELT 751 800 ENSP00000238256/1-1219 DLRVEKESLE KNLSERKKKS AQERSQAEEE IDEIRKSYQE ELDKLRQLLK ENSBTAP00000006746/1-1194 DLRTEKESLE KNLSERKKKS AQERCQAEEE IDEIRKSHQE ELDKLRQLLK BACU007327/1-1165 DLRAEKESLE KNLSERKKKS AQERCQAEEE IDEIRKSHQE ELDKLRQLLK bmy_05196T0/1-1192 DLRAEKESLE KNLSERKKKS AQERCQAEEE IDEIRKSHQE ELDKLRQLLK ENSTTRP00000003040/1-1214 DLRAEKESLE KNLSERKKKS AQERCQAEEE IDEIRKSHQE ELDKLRQLLK 801 850 ENSP00000238256/1-1219 KTRVSTDQAA AEQLSLVQAE LQTQWEAKCE HLLASAKDEH LQQYQEVCAQ ENSBTAP00000006746/1-1194 KARVSTDQAA AEQLSLVQAE LQTQWEAKCE QLLASAKNEH LQQYQEVCTQ BACU007327/1-1165 KARVSTDQAA AEQLSLVQAE LQTQWEAKCE HLLASAKNEH LQQYQEACAQ bmy_05196T0/1-1192 KARVSTDQAA AEQLSLVQAE LQTQWEAKCE HLLASAKNEH LQQYQEACAQ ENSTTRP00000003040/1-1214 KARVSTDQAA AEQLSLVQAE LQTQWEAKCE HLLTSAKNEH LQQYQEACAQ 851 900 ENSP00000238256/1-1219 RDAYQQKLVQ LQEKCLALQA QITALTKQNE QHIKELEKNK SQMSGVE--A ENSBTAP00000006746/1-1194 RDASQQQLLQ LEEKCSALQA QVTSLREQNA QHIKDLE-SK AQTSGVE--A BACU007327/1-1165 RDARQQKLLH LEEKCSALQA QVTALTEQNA QHIKDLE-SK SQMSGVEAAA bmy_05196T0/1-1192 RDARQQKLLH LEEKCLALQA QVTALTEQNA QRIKDLE-SK SQMSGVEAAA ENSTTRP00000003040/1-1214 RDARQQELLH LEEKCLALQA QVTALTEQNA QHIKDLE-SK SQMSGVEAAA 901 950 ENSP00000238256/1-1219 AASDPSEKVK KIMNQVFQSL RREFELEESY NGRTILGTIM NTIKMVTLQL ENSBTAP00000006746/1-1194 TAADPSEKVK KIMNQVFQFL RGEFELEEFY SGRTVLGTIM NTIKMVTLRL BACU007327/1-1165 AAADPSEKVK KIMNQVFQSL RGEFELEESY NGRTILGTIM NTIKMVTLRL bmy_05196T0/1-1192 AAADPSEKVK KIMNQVFQSL RGEFELEESY NGRTILGTIM NTIKMVTLRL ENSTTRP00000003040/1-1214 AAADPSEKVK KIMNQVFQSL RGEFELEESY NGRTILGTIM NTIKMVTLRL 951 1000 ENSP00000238256/1-1219 LNQQEQEKEE SSS-EEEEEK AEERPRRPSQ EQSASASSGQ PQAPLNRERP ENSBTAP00000006746/1-1194 LNQHEQEKGE SSN-EEEEEE DEAQARSP-- -------SGQ SQAPLDRESQ BACU007327/1-1165 LNQHEREKGE SSNEEEEEEE EEERPQSA-- -------SGQ SQAPLNRERR bmy_05196T0/1-1192 LNQHEREKGE SSNEEEEEEE EEERPQSA-- -------SGQ SQAPLNRERR ENSTTRP00000003040/1-1214 LNQHEREKGE SSNEEEEEEE EEERPQSA-- -------SGQ SQAPLNRERR 1001 1050 ENSP00000238256/1-1219 ESPMVPSEQV VEEAVPLPPQ ALTTSQ-DGH RRKGD-SEAE ALSEIKDGSL ENSBTAP00000006746/1-1194 GPPAVLSEWV VQEDAPLSPQ GCPTPQDDAQ RREGEPSEIE ASLEIKERSV BACU007327/1-1165 EPPMVPSEQV VQEAAPLPPQ ALPAPQDDAQ RREGEPSEAE ARSEIKEPA- bmy_05196T0/1-1192 EPPMVPSEQV VQEAAPLPPQ ALPAPQDDAQ RREGEPSEAE ARSEIKEPA- ENSTTRP00000003040/1-1214 EPPMVPSEQV VQEAAPLPPQ ALPTPQADAQ RREGEPSEAE ARSEIKEPA- 1051 1100 ENSP00000238256/1-1219 PPELSCIPSH RVLGPPTSIP PEPLGPVSMD SECEESLAAS PMAAKPDNPS ENSBTAP00000006746/1-1194 SSEVACLPSR RALGPPTSIP PRPPGPVAVD SEGEEAL--- ---------- BACU007327/1-1165 -----CLPSR RALGPPTSIP PAPPGLVTVD SEGEEALAAS PL-------- bmy_05196T0/1-1192 -----CPPSR RALGPPASIP PAPPGPVTVD SEGEEALAAS PL-------- ENSTTRP00000003040/1-1214 -----CLPSR RALGPPTSIP PAPPGPVTVD SAGEEALAAS PL-------- 1101 1150 ENSP00000238256/1-1219 GKVCVREVAP DGPLQESSTR LSLTSDPEEG DPLALGPESP -GEPQPPQLK ENSBTAP00000006746/1-1194 GDTHVRE--- ----EESSTR LSPTSDPEKV DPLAVGPESP GGEPQPPELQ BACU007327/1-1165 GDACVGE--- ----QESSTR LPLTSDPEKV DPLAAGPESP GGEPQAPELQ bmy_05196T0/1-1192 GDACVGE--- ----QESSTR LPLTSDPEKM DPLAVGPESP GGERQAPELQ ENSTTRP00000003040/1-1214 GDACVGE--- ----QESSTR LPLTSDPEKV DLLAVGPESP GGEPQAPELQ 1151 1200 ENSP00000238256/1-1219 KD-DVTSSTG PHKELSSTEA GSTVAGAALR PSHHSQRSSL SGDEEDELFK ENSBTAP00000006746/1-1194 EDRDVTSSAA PSQEPCGPEA APAAMGAAPG SEQCSQHPSL SEDEEDELFK BACU007327/1-1165 KDEDGTSSAA PSREPHGTEA ASAAVGAVPG SEHRSQHPSL SEDEEDELFK bmy_05196T0/1-1192 KDEDGTSSAA PSQEPHGTEA ASAAVGAVPA SEHSSQHPSL S---EDELFK ENSTTRP00000003040/1-1214 KDEDGTSSAA PSQEPHGTEA ASAAVGAVPG SEHRSQHPSL SEDEEDELFK 1201 1250 ENSP00000238256/1-1219 GATLKALRPK AQPEEEDEDE VSMKGRPPPT PLFGDDDDDD DIDWLG ENSBTAP00000006746/1-1194 GASLKIPKPK AQAEEEDEDE VSMKGRPPPT PLFGDDDDDD DIDWLG BACU007327/1-1165 GTALKVPRPK AQAEEEDEDE VSMKGRPPPT PLFGDDDDDD DIDWLG bmy_05196T0/1-1192 GTTLKVPRPK AQAEEEDEDE VSMKGRPPPT PLFGDDDDDD DIDWLG ENSTTRP00000003040/1-1214 GTTLKVPRPK AQAEEEDEDE VSMKGRPPPT PLFGDDDDDE DIDWLG